Clone RT06158 Report

Search the DGRC for RT06158

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:61
Well:58
Vector:pCR2.1
Associated Gene/TranscriptPk34A-RA
Protein status:RT06158.pep: gold
Sequenced Size:1179

Clone Sequence Records

RT06158.complete Sequence

1179 bp assembled on 2010-02-26

GenBank Submission: BT120381.1

> RT06158.complete
ATGGAAAATAAAGAAAAGAAGCAAAAGCCCCTTAAACGCCATGCCCAAGT
TCCACTCATCATTCCCAAGAACTCAGTGATCAGCACCTATGCCGTCGGTC
GCCTCTGTTCGGAACCTGCTTTGGTCAGGATTGAGGTTAAAGATCTGATT
GGAAGTGGATCCTTTGGCCGGGTTTACCAGGCTCATGTGAATGAGTCCGA
GGAAATAGTGGCCGTTAAGCAAACCCTTTACAATCCGAAGTTGAGCCAGG
GCGAAGCAGAAATTATGGGTCAGCTAAAGGACCACAACAACATTGTCCGG
CTCATCATGCACTCGTCCGTGAGTTTGGGCTTTCCGTCAGTGGACTACGT
TTTGCTGGTTATGGAGTACATGCCTATGACTTTGCTGGACTATATCAACT
ATCACCTAACGGTGCTACAGCCCGCAGAGCGCCTAATCAATGTCCGCATA
CTCTCGTATCAGATGTTCAGAGGATTGGGATATCTTCATCTATTGGGCAT
TTCCCACCGGGACGTCAAGCCCGAGAATCTGCTGATAGACAACCAGAAGA
TGGTGCTTAAGCTAAGTGATTTTGGAAGCGCCAAACTCCTGGTGCCCCAG
GAGCCCAGTATAAGCTACATTTGCTCCAGGCTTTATCGTGCTCCGGAGCT
TTTTGCCGGGTACGAACTTTATTCGTGTGCCGTGGACATCTGGAGTGCTG
GTTGCGTCCTGGCGGAGCTGCTCAAGGGATATCCGCTCTTCTCCAGCCAC
AAACATGACCGAAAGCAGCTGCGACTCATCGTTAATATGCTGGGCACCGA
TGGCTTGGAACGAGCTCCTGAAATACTCTCAAAGTGCGGAAATTCACTTC
ACCCACGGACCACTCGTCCCAGTTGGAATTATCTCCTGAATACGGCTGTT
CCGCAGGATCTGTGCGGTTTGTTGAACTCGTGTTTCATCTATGAAGCCGC
CGCTAGAATCTCACCTATGATGGCATGTAGTCATGGTTCCTATGATGAAT
TGCGCATCATGGACGCCATGGCGTTGCCCATGCCCAATGGCAATCCGCTC
CCCCCTCTGTTCGACTTCAACAGCCTGGAGATGGGTACAGATCCAAAACT
TTGGGTCAACCTATTACCGATCCATTTGTCTTCAATGGAGGACAAGTATT
CGGTCGTAGAAGCCTTTGAAGCAGTCTAG

RT06158.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
Pk34A-RA 1417 Pk34A-RA 106..1284 1..1179 5865 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13157640..13158815 4..1179 5805 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:43:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13158943..13160118 4..1179 5850 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13158943..13160118 4..1179 5850 99.8 Plus
Blast to na_te.dros performed on 2019-03-16 18:38:13 has no hits.

RT06158.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:39:00 Download gff for RT06158.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13157638..13158815 1..1179 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-26 14:16:12 Download gff for RT06158.complete
Subject Subject Range Query Range Percent Splice Strand
Pk34A-RA 1..1179 1..1179 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:54:49 Download gff for RT06158.complete
Subject Subject Range Query Range Percent Splice Strand
Pk34A-RA 1..1179 1..1179 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:14 Download gff for RT06158.complete
Subject Subject Range Query Range Percent Splice Strand
Pk34A-RA 1..1179 1..1179 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:42 Download gff for RT06158.complete
Subject Subject Range Query Range Percent Splice Strand
Pk34A-RA 1..1179 1..1179 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-26 14:16:11 Download gff for RT06158.complete
Subject Subject Range Query Range Percent Splice Strand
Pk34A-RA 70..1248 1..1179 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:54:48 Download gff for RT06158.complete
Subject Subject Range Query Range Percent Splice Strand
Pk34A-RA 70..1248 1..1179 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:14 Download gff for RT06158.complete
Subject Subject Range Query Range Percent Splice Strand
Pk34A-RA 70..1248 1..1179 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:42 Download gff for RT06158.complete
Subject Subject Range Query Range Percent Splice Strand
Pk34A-RA 70..1248 1..1179 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:39:00 Download gff for RT06158.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13158941..13160118 1..1179 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:39:00 Download gff for RT06158.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13158941..13160118 1..1179 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:39:00 Download gff for RT06158.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13158941..13160118 1..1179 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:14 Download gff for RT06158.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13158941..13160118 1..1179 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:31:17 Download gff for RT06158.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13158941..13160118 1..1179 99   Plus

RT06158.pep Sequence

Translation from 0 to 1178

> RT06158.pep
MENKEKKQKPLKRHAQVPLIIPKNSVISTYAVGRLCSEPALVRIEVKDLI
GSGSFGRVYQAHVNESEEIVAVKQTLYNPKLSQGEAEIMGQLKDHNNIVR
LIMHSSVSLGFPSVDYVLLVMEYMPMTLLDYINYHLTVLQPAERLINVRI
LSYQMFRGLGYLHLLGISHRDVKPENLLIDNQKMVLKLSDFGSAKLLVPQ
EPSISYICSRLYRAPELFAGYELYSCAVDIWSAGCVLAELLKGYPLFSSH
KHDRKQLRLIVNMLGTDGLERAPEILSKCGNSLHPRTTRPSWNYLLNTAV
PQDLCGLLNSCFIYEAAARISPMMACSHGSYDELRIMDAMALPMPNGNPL
PPLFDFNSLEMGTDPKLWVNLLPIHLSSMEDKYSVVEAFEAV*

RT06158.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:13:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14218-PA 215 GF14218-PA 1..209 184..392 729 64.6 Plus
Dana\GF22237-PA 1393 GF22237-PA 856..1178 49..376 594 41 Plus
Dana\GF17782-PA 506 GF17782-PA 16..357 25..373 536 37.3 Plus
Dana\GF18045-PA 295 GF18045-PA 8..294 43..331 358 32 Plus
Dana\GF18893-PA 366 GF18893-PA 31..309 50..328 299 32.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23814-PA 395 GG23814-PA 5..395 2..392 1690 81.6 Plus
Dere\GG12945-PA 1146 GG12945-PA 627..949 49..376 597 41 Plus
Dere\GG11804-PA 503 GG11804-PA 11..370 24..386 559 37 Plus
Dere\GG17482-PA 295 GG17482-PA 8..294 43..331 357 31.3 Plus
Dere\GG11042-PA 290 GG11042-PA 8..289 43..331 356 32.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11389-PA 368 GH11389-PA 8..368 12..379 897 50.4 Plus
Dgri\GH24854-PA 598 GH24854-PA 59..381 49..376 593 40.7 Plus
Dgri\GH16465-PA 486 GH16465-PA 33..354 49..375 539 39.3 Plus
Dgri\GH17105-PA 295 GH17105-PA 8..295 43..332 351 32.4 Plus
Dgri\GH11110-PA 361 GH11110-PA 26..304 50..328 294 32.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
Pk34A-PA 392 CG5182-PA 1..392 1..392 2037 100 Plus
sgg-PG 496 CG2621-PG 41..365 49..378 591 40.8 Plus
sgg-PC 514 CG2621-PC 59..383 49..378 591 40.8 Plus
sgg-PF 514 CG2621-PF 59..383 49..378 591 40.8 Plus
sgg-PE 514 CG2621-PE 59..383 49..378 591 40.8 Plus
sgg-PB 514 CG2621-PB 59..383 49..378 591 40.8 Plus
sgg-PI 514 CG2621-PI 59..383 49..378 591 40.8 Plus
sgg-PH 514 CG2621-PH 59..383 49..378 591 40.8 Plus
sgg-PA 575 CG2621-PA 59..383 49..378 591 40.8 Plus
sgg-PJ 575 CG2621-PJ 59..383 49..378 591 40.8 Plus
sgg-PR 597 CG2621-PR 81..405 49..378 591 40.8 Plus
sgg-PD 1067 CG2621-PD 612..936 49..378 591 40.8 Plus
sgg-PQ 1168 CG2621-PQ 652..976 49..378 591 40.8 Plus
sgg-PP 1126 CG2621-PP 652..995 49..378 562 38.9 Plus
gskt-PA 501 CG31003-PA 16..357 25..373 555 38.7 Plus
sgg-PM 772 CG2621-PM 293..580 49..378 536 38.2 Plus
sgg-PN 416 CG2621-PN 5..285 94..378 514 40.9 Plus
sgg-PK 416 CG2621-PK 5..285 94..378 514 40.9 Plus
sgg-PO 441 CG2621-PO 5..285 94..378 514 40.9 Plus
CG6800-PA 302 CG6800-PA 8..298 43..335 348 31.2 Plus
p38a-PC 366 CG5475-PC 31..309 50..328 292 33.7 Plus
p38a-PB 366 CG5475-PB 31..309 50..328 292 33.7 Plus
p38a-PA 366 CG5475-PA 31..309 50..328 292 33.7 Plus
CG7236-PC 438 CG7236-PC 26..264 34..265 291 34.5 Plus
CG7236-PD 412 CG7236-PD 23..238 43..265 286 35.8 Plus
nmo-PC 414 CG7892-PC 46..334 50..336 286 31.1 Plus
nmo-PB 414 CG7892-PB 46..334 50..336 286 31.1 Plus
nmo-PA 414 CG7892-PA 46..334 50..336 286 31.1 Plus
CG7236-PE 421 CG7236-PE 32..247 43..265 286 35.8 Plus
nmo-PH 430 CG7892-PH 46..334 50..336 286 31.1 Plus
nmo-PG 430 CG7892-PG 46..334 50..336 286 31.1 Plus
nmo-PF 430 CG7892-PF 46..334 50..336 286 31.1 Plus
nmo-PE 430 CG7892-PE 46..334 50..336 286 31.1 Plus
CG7236-PB 435 CG7236-PB 46..261 43..265 286 35.8 Plus
p38b-PA 365 CG7393-PA 30..308 50..328 282 31.8 Plus
Cdk7-PA 353 CG3319-PA 18..291 50..327 276 32.6 Plus
Cdc2rk-PA 387 CG1362-PA 59..367 50..349 274 30.5 Plus
Eip63E-PH 501 CG10579-PH 181..418 38..284 271 32.5 Plus
Eip63E-PM 509 CG10579-PM 189..426 38..284 271 32.5 Plus
Eip63E-PC 509 CG10579-PC 189..426 38..284 271 32.5 Plus
Eip63E-PB 509 CG10579-PB 189..426 38..284 271 32.5 Plus
Eip63E-PA 509 CG10579-PA 189..426 38..284 271 32.5 Plus
Eip63E-PJ 509 CG10579-PJ 189..426 38..284 271 32.5 Plus
Eip63E-PF 509 CG10579-PF 189..426 38..284 271 32.5 Plus
Eip63E-PL 522 CG10579-PL 202..439 38..284 271 32.5 Plus
Eip63E-PE 522 CG10579-PE 202..439 38..284 271 32.5 Plus
Eip63E-PD 522 CG10579-PD 202..439 38..284 271 32.5 Plus
Eip63E-PK 522 CG10579-PK 202..439 38..284 271 32.5 Plus
Cdk2-PC 314 CG10498-PC 14..303 50..346 270 29.7 Plus
Cdk2-PB 314 CG10498-PB 14..303 50..346 270 29.7 Plus
Cdk2-PA 314 CG10498-PA 14..303 50..346 270 29.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18094-PA 351 GI18094-PA 2..351 31..382 946 53 Plus
Dmoj\GI14403-PA 1113 GI14403-PA 602..924 49..376 599 41 Plus
Dmoj\GI22202-PA 524 GI22202-PA 36..363 49..381 555 39.5 Plus
Dmoj\GI10576-PA 295 GI10576-PA 8..295 43..332 352 33.7 Plus
Dmoj\GI17559-PA 394 GI17559-PA 3..291 43..333 302 32.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24740-PA 338 GL24740-PA 1..308 70..376 869 54 Plus
Dper\GL27247-PA 506 GL27247-PA 1..361 19..378 568 38.9 Plus
Dper\GL26894-PA 987 GL26894-PA 326..549 49..275 463 45.2 Plus
Dper\GL23794-PA 295 GL23794-PA 8..294 43..331 366 32.7 Plus
Dper\GL24141-PA 366 GL24141-PA 31..345 50..372 297 30.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18716-PA 396 GA18716-PA 4..366 16..376 936 50.3 Plus
Dpse\GA22660-PA 1523 GA22660-PA 996..1320 49..378 596 40.8 Plus
Dpse\GA15928-PA 506 GA15928-PA 1..361 19..378 570 38.9 Plus
Dpse\GA19870-PA 295 GA19870-PA 8..294 43..331 363 32.3 Plus
Dpse\GA26518-PA 370 GA26518-PA 21..327 45..357 318 28.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10146-PA 392 GM10146-PA 1..392 1..392 1898 89.8 Plus
Dsec\GM16104-PA 695 GM16104-PA 183..507 49..378 597 40.8 Plus
Dsec\GM12939-PA 502 GM12939-PA 15..357 24..373 563 38.2 Plus
Dsec\GM19237-PA 817 GM19237-PA 572..738 107..275 373 47.6 Plus
Dsec\GM26375-PA 295 GM26375-PA 8..294 43..331 358 31.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23865-PA 392 GD23865-PA 1..392 1..392 1887 89 Plus
Dsim\GD21574-PA 502 GD21574-PA 15..357 24..373 563 38.2 Plus
Dsim\GD20897-PA 295 GD20897-PA 8..294 43..331 359 31.6 Plus
Dsim\GD23357-PA 438 GD23357-PA 26..276 34..278 303 34.3 Plus
Dsim\GD18318-PA 366 GD18318-PA 31..309 50..328 295 33.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16845-PA 392 GJ16845-PA 28..382 20..377 994 53.2 Plus
Dvir\GJ18748-PA 585 GJ18748-PA 59..383 49..378 600 40.8 Plus
Dvir\GJ24323-PA 512 GJ24323-PA 36..349 49..367 560 41.2 Plus
Dvir\GJ22933-PA 289 GJ22933-PA 8..283 43..320 341 34 Plus
Dvir\GJ15594-PA 416 GJ15594-PA 10..311 30..333 301 31.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15312-PA 363 GK15312-PA 15..352 44..376 894 49.9 Plus
Dwil\GK25068-PA 1164 GK25068-PA 617..941 49..378 603 40.8 Plus
Dwil\GK22761-PA 519 GK22761-PA 37..356 49..373 560 40.2 Plus
Dwil\GK14226-PA 295 GK14226-PA 8..295 43..332 352 32.4 Plus
Dwil\GK14689-PA 421 GK14689-PA 32..247 43..265 297 35.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18616-PA 392 GE18616-PA 1..392 1..392 1703 80.9 Plus
Dyak\GE10939-PA 502 GE10939-PA 16..362 25..378 566 38.6 Plus
Dyak\GE16268-PA 238 GE16268-PA 59..237 49..229 365 44.5 Plus
Dyak\GE10241-PA 295 GE10241-PA 8..294 43..331 356 31.3 Plus
Dyak\GE25570-PA 438 GE25570-PA 26..276 34..278 303 34.3 Plus

RT06158.hyp Sequence

Translation from 3 to 1178

> RT06158.hyp
ENKEKKQKPLKRHAQVPLIIPKNSVISTYAVGRLCSEPALVRIEVKDLIG
SGSFGRVYQAHVNESEEIVAVKQTLYNPKLSQGEAEIMGQLKDHNNIVRL
IMHSSVSLGFPSVDYVLLVMEYMPMTLLDYINYHLTVLQPAERLINVRIL
SYQMFRGLGYLHLLGISHRDVKPENLLIDNQKMVLKLSDFGSAKLLVPQE
PSISYICSRLYRAPELFAGYELYSCAVDIWSAGCVLAELLKGYPLFSSHK
HDRKQLRLIVNMLGTDGLERAPEILSKCGNSLHPRTTRPSWNYLLNTAVP
QDLCGLLNSCFIYEAAARISPMMACSHGSYDELRIMDAMALPMPNGNPLP
PLFDFNSLEMGTDPKLWVNLLPIHLSSMEDKYSVVEAFEAV*

RT06158.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Pk34A-PA 392 CG5182-PA 2..392 1..391 2032 100 Plus
sgg-PG 496 CG2621-PG 41..365 48..377 591 40.8 Plus
sgg-PC 514 CG2621-PC 59..383 48..377 591 40.8 Plus
sgg-PF 514 CG2621-PF 59..383 48..377 591 40.8 Plus
sgg-PE 514 CG2621-PE 59..383 48..377 591 40.8 Plus