BDGP Sequence Production Resources |
Search the DGRC for RT06163
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 61 |
Well: | 63 |
Vector: | pCR2.1 |
Associated Gene/Transcript | ppk19-RA |
Protein status: | RT06163.pep: gold |
Sequenced Size: | 1536 |
1536 bp assembled on 2010-02-26
GenBank Submission: BT120380.1
> RT06163.complete ATGTTGCTGTACACCAAGGAACTTGTGATTCCGCGGCCGAGACCAGGACT ACTGCGCTTCAGGAACAATCCGCGTGGTATTAAGTTTCGGGAAAAACTGT GCAACTCCTTTGCCCACTCCAACATCCATGGGATGCAGCACGTCTTCGGG GAGCAGCATCTCTGGCAGCGCTGCCTGTGGCTCGCCATCGTCCTGGGAGC GGTGATCACAGGATTCAGTCTGTACACCGTGCTGATGCATCGCCACAGCG AGCAGCTCCTGGTCAGCCTGATAGAGACCACCCAGTTGCCAGTGTACCAC ATCGACTTTCCAGCTGTGGCCGTTTGCCCCTGGAATCATTTCAACTGGCA GAGGGCTCCGTCGGCATTTATCCGCTTTCTGCCACGTCATCCGAATGCCG AGCTCCGGGAAACATTTCGCCAGCTACTCGCCAGTATGGACATTATGAAC TTCTCCAACTTTAACCGGATACGGATTCTGACCAAACGAAATCTGACGGG AATTAGTTATCTAAAAATGACGGACCTGATGAACTTCATGACCTATAGAT GCGATGAACTCTTCGTCGCCGATTCCTGCGTCTTCGATGAGACTCCCTAC GACTGCTGCAAACTTTTCGTACGGGAGCAGACGGTGAAGGGCCAGTGCTT GGTCTTCAACTCCATGATTTCGGAGAACTCGCGCAAAAAGCACCTGATTA ACCAGTTCTATCCCCACAAGCTGAGCACCGCTGGCGAGGATTCGGGCCTG AAGTTCACGATCAATGCAAGCTACTCCTTTATGAACAACATAGACGCTCT GACTCCATTTGGAATGAATCTCATGATTAAGGAACCACGCCAGTGGTCCA ATGAAATGATGTACCACCTGTACCCGGATACGGAGAACTTTGTTGCTGTG CATCCGCTGGTCACGGAAACCTCTCCAAATACCTATGAAATGAGTCCCAA AAAAAGACGTTGCTACTTTGATGATGAAAAGAACCCTACCTTCCAGAACA CTTCGTTGACTTATAACCGCGAAAACTGCCTGGTGGTGTGCCTCCACTTA GTTGTGTGGAAGACCTGCCAGTGCTCGCTGCCAGCTTTTCTGCCTCCCAT TGATGGAGTTCCGGAATGTGGAATCAACGATGCACAATGCTTGGGCAACA ATTCCGATATATTCACTTACGTGAAGATGGGTGATCAGGAGAAATACATT AACGACTCACGACAGGGTCACTTTTGTGATTGCCCAGACAATTGCAATTC ACGGCTGTACGAAATGTCACTTAATGTGCGCAAATTGGATTACCCAAAAA ACTCGACAGATCAATTGATAAAAGCCCAGGTTTATTATGGCCAACGTGTC ATGACCAAAATCATTACGAAACTCAAGTACACCAATATAGATTTACTGGC CAACTTTGGCGGGATCATAAGTCTGTATATAGGGGCCTCCGTCATGAGTT TTATAGAGCTTTTATTTGTGCTGGGAAAACTGATGTGGGGTTTCATCAGA GATGCGCGCATAAAATTGAAAGAGTATACTAAGTAG
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 25495069..25495887 | 1..819 | 3960 | 98.9 | Plus |
chr3R | 27901430 | chr3R | 25496597..25496840 | 1293..1536 | 1205 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 25496349..25496539 | 1102..1292 | 940 | 99.5 | Plus |
chr3R | 27901430 | chr3R | 25495957..25496110 | 820..973 | 725 | 98.1 | Plus |
chr3R | 27901430 | chr3R | 25496172..25496301 | 973..1102 | 650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 29672456..29673274 | 1..819 | 4095 | 100 | Plus |
3R | 32079331 | 3R | 29673980..29674223 | 1293..1536 | 1220 | 100 | Plus |
3R | 32079331 | 3R | 29673732..29673922 | 1102..1292 | 955 | 100 | Plus |
3R | 32079331 | 3R | 29673340..29673493 | 820..973 | 770 | 100 | Plus |
3R | 32079331 | 3R | 29673554..29673683 | 973..1102 | 650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 29413287..29414105 | 1..819 | 4095 | 100 | Plus |
3R | 31820162 | 3R | 29414811..29415054 | 1293..1536 | 1220 | 100 | Plus |
3R | 31820162 | 3R | 29414563..29414753 | 1102..1292 | 955 | 100 | Plus |
3R | 31820162 | 3R | 29414171..29414324 | 820..973 | 770 | 100 | Plus |
3R | 31820162 | 3R | 29414385..29414514 | 973..1102 | 650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 25495069..25495887 | 1..819 | 98 | -> | Plus |
chr3R | 25495957..25496109 | 820..972 | 98 | -> | Plus |
chr3R | 25496172..25496301 | 973..1102 | 100 | -> | Plus |
chr3R | 25496350..25496539 | 1103..1292 | 99 | -> | Plus |
chr3R | 25496597..25496840 | 1293..1536 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ppk19-RA | 1..1536 | 1..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ppk19-RA | 1..1536 | 1..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ppk19-RA | 1..1536 | 1..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ppk19-RA | 1..1536 | 1..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ppk19-RA | 1..1536 | 1..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ppk19-RA | 1..1536 | 1..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ppk19-RA | 1..1536 | 1..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ppk19-RA | 1..1536 | 1..1536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29673980..29674223 | 1293..1536 | 100 | Plus | |
3R | 29673340..29673492 | 820..972 | 100 | -> | Plus |
3R | 29673554..29673683 | 973..1102 | 100 | -> | Plus |
3R | 29673733..29673922 | 1103..1292 | 100 | -> | Plus |
3R | 29672456..29673274 | 1..819 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29673980..29674223 | 1293..1536 | 100 | Plus | |
3R | 29673340..29673492 | 820..972 | 100 | -> | Plus |
3R | 29673554..29673683 | 973..1102 | 100 | -> | Plus |
3R | 29673733..29673922 | 1103..1292 | 100 | -> | Plus |
3R | 29672456..29673274 | 1..819 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29673980..29674223 | 1293..1536 | 100 | Plus | |
3R | 29673340..29673492 | 820..972 | 100 | -> | Plus |
3R | 29673554..29673683 | 973..1102 | 100 | -> | Plus |
3R | 29673733..29673922 | 1103..1292 | 100 | -> | Plus |
3R | 29672456..29673274 | 1..819 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 25499276..25499405 | 973..1102 | 100 | -> | Plus |
arm_3R | 25499455..25499644 | 1103..1292 | 100 | -> | Plus |
arm_3R | 25499702..25499945 | 1293..1536 | 100 | Plus | |
arm_3R | 25498178..25498996 | 1..819 | 100 | -> | Plus |
arm_3R | 25499062..25499214 | 820..972 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29413287..29414105 | 1..819 | 100 | -> | Plus |
3R | 29414171..29414323 | 820..972 | 100 | -> | Plus |
3R | 29414385..29414514 | 973..1102 | 100 | -> | Plus |
3R | 29414564..29414753 | 1103..1292 | 100 | -> | Plus |
3R | 29414811..29415054 | 1293..1536 | 100 | Plus |
Translation from 0 to 1535
> RT06163.pep MLLYTKELVIPRPRPGLLRFRNNPRGIKFREKLCNSFAHSNIHGMQHVFG EQHLWQRCLWLAIVLGAVITGFSLYTVLMHRHSEQLLVSLIETTQLPVYH IDFPAVAVCPWNHFNWQRAPSAFIRFLPRHPNAELRETFRQLLASMDIMN FSNFNRIRILTKRNLTGISYLKMTDLMNFMTYRCDELFVADSCVFDETPY DCCKLFVREQTVKGQCLVFNSMISENSRKKHLINQFYPHKLSTAGEDSGL KFTINASYSFMNNIDALTPFGMNLMIKEPRQWSNEMMYHLYPDTENFVAV HPLVTETSPNTYEMSPKKRRCYFDDEKNPTFQNTSLTYNRENCLVVCLHL VVWKTCQCSLPAFLPPIDGVPECGINDAQCLGNNSDIFTYVKMGDQEKYI NDSRQGHFCDCPDNCNSRLYEMSLNVRKLDYPKNSTDQLIKAQVYYGQRV MTKIITKLKYTNIDLLANFGGIISLYIGASVMSFIELLFVLGKLMWGFIR DARIKLKEYTK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23358-PA | 509 | GF23358-PA | 1..508 | 1..507 | 1850 | 66.8 | Plus |
Dana\GF22877-PA | 554 | GF22877-PA | 32..493 | 40..491 | 632 | 32.5 | Plus |
Dana\GF15394-PA | 584 | GF15394-PA | 52..501 | 40..491 | 538 | 27.2 | Plus |
Dana\GF11173-PA | 444 | GF11173-PA | 2..437 | 57..507 | 371 | 25.8 | Plus |
Dana\GF23355-PA | 479 | GF23355-PA | 23..413 | 7..388 | 352 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11677-PA | 511 | GG11677-PA | 1..511 | 1..511 | 2431 | 86.3 | Plus |
Dere\GG23630-PA | 577 | GG23630-PA | 46..498 | 40..491 | 524 | 26.5 | Plus |
Dere\GG11673-PA | 554 | GG11673-PA | 79..534 | 57..508 | 510 | 28.6 | Plus |
Dere\GG10406-PA | 496 | GG10406-PA | 40..475 | 38..489 | 384 | 26.1 | Plus |
Dere\GG24007-PA | 531 | GG24007-PA | 40..519 | 12..491 | 284 | 24.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18908-PA | 519 | GH18908-PA | 1..504 | 1..501 | 1433 | 53.8 | Plus |
Dgri\GH18687-PA | 543 | GH18687-PA | 33..478 | 40..491 | 638 | 32.3 | Plus |
Dgri\GH23278-PA | 242 | GH23278-PA | 50..242 | 176..369 | 606 | 57.7 | Plus |
Dgri\GH18904-PA | 551 | GH18904-PA | 1..521 | 2..498 | 480 | 25.5 | Plus |
Dgri\GH10991-PA | 570 | GH10991-PA | 44..493 | 40..491 | 478 | 25.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ppk19-PA | 511 | CG18287-PA | 1..511 | 1..511 | 2757 | 100 | Plus |
ppk20-PB | 564 | CG7577-PB | 38..499 | 40..491 | 653 | 32.1 | Plus |
ppk20-PC | 565 | CG7577-PC | 38..500 | 40..491 | 636 | 31.2 | Plus |
ppk20-PA | 587 | CG7577-PA | 78..522 | 57..491 | 623 | 31.6 | Plus |
ppk7-PA | 573 | CG9499-PA | 42..494 | 40..491 | 530 | 26.3 | Plus |
ppk21-PB | 548 | CG12048-PB | 53..524 | 38..503 | 527 | 27.6 | Plus |
ppk21-PA | 550 | CG12048-PA | 53..526 | 38..503 | 522 | 27.4 | Plus |
ppk14-PB | 504 | CG9501-PB | 47..482 | 38..489 | 392 | 26 | Plus |
ppk16-PA | 531 | CG34059-PA | 52..519 | 29..491 | 312 | 24.9 | Plus |
ppk-PA | 606 | CG3478-PA | 73..587 | 40..503 | 253 | 22.8 | Plus |
ppk26-PC | 597 | CG8546-PC | 77..591 | 39..511 | 250 | 19.8 | Plus |
ppk11-PA | 516 | CG34058-PA | 100..478 | 40..489 | 243 | 20.6 | Plus |
ppk23-PA | 477 | CG8527-PA | 35..450 | 37..489 | 242 | 21.3 | Plus |
ppk23-PD | 566 | CG8527-PD | 35..450 | 37..489 | 242 | 21.3 | Plus |
Nach-PD | 535 | CG8178-PD | 32..492 | 38..495 | 223 | 22.3 | Plus |
ppk30-PB | 457 | CG18110-PB | 73..444 | 91..488 | 215 | 24.3 | Plus |
ppk30-PA | 457 | CG18110-PA | 73..444 | 91..488 | 215 | 24.3 | Plus |
ppk15-PB | 483 | CG14239-PB | 16..465 | 25..489 | 215 | 21.8 | Plus |
ppk23-PB | 502 | CG8527-PB | 35..475 | 37..489 | 211 | 20 | Plus |
ppk23-PC | 591 | CG8527-PC | 35..475 | 37..489 | 211 | 20 | Plus |
ppk6-PA | 498 | CG11209-PA | 63..475 | 57..489 | 187 | 22 | Plus |
ppk28-PA | 606 | CG4805-PA | 46..510 | 39..491 | 184 | 19.9 | Plus |
ppk18-PA | 553 | CG44152-PA | 13..511 | 29..491 | 181 | 20.9 | Plus |
ppk31-PB | 421 | CG31065-PB | 108..391 | 174..490 | 178 | 22.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23407-PA | 514 | GI23407-PA | 1..510 | 1..506 | 1393 | 50.7 | Plus |
Dmoj\GI24197-PA | 558 | GI24197-PA | 36..493 | 40..491 | 675 | 33.3 | Plus |
Dmoj\GI17506-PA | 571 | GI17506-PA | 45..510 | 40..506 | 516 | 26 | Plus |
Dmoj\GI23122-PA | 555 | GI23122-PA | 53..529 | 38..508 | 497 | 27 | Plus |
Dmoj\GI11553-PA | 467 | GI11553-PA | 44..462 | 40..467 | 326 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13899-PA | 512 | GL13899-PA | 1..510 | 1..509 | 1977 | 69.5 | Plus |
Dper\GL26268-PA | 572 | GL26268-PA | 9..487 | 11..491 | 505 | 26 | Plus |
Dper\GL13896-PA | 636 | GL13896-PA | 5..490 | 8..470 | 444 | 25.5 | Plus |
Dper\GL25522-PA | 499 | GL25522-PA | 47..477 | 37..483 | 338 | 26.4 | Plus |
Dper\GL19209-PA | 529 | GL19209-PA | 34..517 | 11..491 | 270 | 23.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14875-PA | 512 | GA14875-PA | 1..510 | 1..509 | 1967 | 69.1 | Plus |
Dpse\GA20451-PA | 561 | GA20451-PA | 33..494 | 40..491 | 632 | 32.3 | Plus |
Dpse\GA11359-PA | 553 | GA11359-PA | 5..523 | 8..503 | 513 | 26.4 | Plus |
Dpse\GA21835-PA | 572 | GA21835-PA | 9..487 | 11..491 | 505 | 26 | Plus |
Dpse\GA21837-PA | 503 | GA21837-PA | 47..477 | 37..483 | 346 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12801-PA | 511 | GM12801-PA | 1..511 | 1..511 | 2562 | 91.4 | Plus |
Dsec\GM12234-PA | 564 | GM12234-PA | 38..499 | 40..491 | 629 | 32 | Plus |
Dsec\GM12798-PA | 553 | GM12798-PA | 53..533 | 38..508 | 551 | 29 | Plus |
Dsec\GM17947-PA | 572 | GM17947-PA | 41..493 | 40..491 | 519 | 26.3 | Plus |
Dsec\GM18622-PA | 463 | GM18622-PA | 47..460 | 38..467 | 323 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21448-PA | 290 | GD21448-PA | 1..290 | 222..511 | 1459 | 91.7 | Plus |
Dsim\GD21445-PA | 553 | GD21445-PA | 53..533 | 38..508 | 531 | 28.4 | Plus |
Dsim\GD22586-PA | 605 | GD22586-PA | 74..526 | 40..491 | 521 | 26.7 | Plus |
Dsim\GD23404-PA | 504 | GD23404-PA | 47..482 | 38..489 | 383 | 26.4 | Plus |
Dsim\GD22336-PA | 531 | GD22336-PA | 44..519 | 19..491 | 282 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10613-PA | 514 | GJ10613-PA | 1..511 | 2..507 | 1460 | 53.5 | Plus |
Dvir\GJ10545-PA | 559 | GJ10545-PA | 33..494 | 40..491 | 643 | 32.1 | Plus |
Dvir\GJ10610-PA | 558 | GJ10610-PA | 1..510 | 2..489 | 552 | 27.3 | Plus |
Dvir\GJ15216-PA | 571 | GJ15216-PA | 45..511 | 40..507 | 521 | 26.2 | Plus |
Dvir\GJ12828-PA | 501 | GJ12828-PA | 42..481 | 40..489 | 434 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11909-PA | 517 | GK11909-PA | 1..512 | 1..507 | 1621 | 58.5 | Plus |
Dwil\GK11911-PA | 516 | GK11911-PA | 1..511 | 1..507 | 1609 | 58.1 | Plus |
Dwil\GK11175-PA | 560 | GK11175-PA | 26..498 | 40..491 | 644 | 32.9 | Plus |
Dwil\GK11905-PA | 552 | GK11905-PA | 55..524 | 40..503 | 510 | 26.1 | Plus |
Dwil\GK15363-PA | 567 | GK15363-PA | 44..493 | 40..491 | 510 | 26.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23866-PA | 511 | GE23866-PA | 1..511 | 1..511 | 2438 | 86.9 | Plus |
Dyak\GE23863-PA | 553 | GE23863-PA | 53..533 | 38..508 | 507 | 27.2 | Plus |
Dyak\GE18451-PA | 556 | GE18451-PA | 52..477 | 40..491 | 397 | 23.6 | Plus |
Dyak\GE13813-PA | 492 | GE13813-PA | 42..475 | 40..489 | 393 | 26.7 | Plus |
Dyak\GE10443-PA | 458 | GE10443-PA | 1..207 | 57..260 | 346 | 33.8 | Plus |
Translation from 1 to 1535
> RT06163.hyp MLLYTKELVIPRPRPGLLRFRNNPRGIKFREKLCNSFAHSNIHGMQHVFG EQHLWQRCLWLAIVLGAVITGFSLYTVLMHRHSEQLLVSLIETTQLPVYH IDFPAVAVCPWNHFNWQRAPSAFIRFLPRHPNAELRETFRQLLASMDIMN FSNFNRIRILTKRNLTGISYLKMTDLMNFMTYRCDELFVADSCVFDETPY DCCKLFVREQTVKGQCLVFNSMISENSRKKHLINQFYPHKLSTAGEDSGL KFTINASYSFMNNIDALTPFGMNLMIKEPRQWSNEMMYHLYPDTENFVAV HPLVTETSPNTYEMSPKKRRCYFDDEKNPTFQNTSLTYNRENCLVVCLHL VVWKTCQCSLPAFLPPIDGVPECGINDAQCLGNNSDIFTYVKMGDQEKYI NDSRQGHFCDCPDNCNSRLYEMSLNVRKLDYPKNSTDQLIKAQVYYGQRV MTKIITKLKYTNIDLLANFGGIISLYIGASVMSFIELLFVLGKLMWGFIR DARIKLKEYTK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ppk19-PA | 511 | CG18287-PA | 1..511 | 1..511 | 2757 | 100 | Plus |
ppk20-PB | 564 | CG7577-PB | 38..499 | 40..491 | 653 | 32.1 | Plus |
ppk20-PC | 565 | CG7577-PC | 38..500 | 40..491 | 636 | 31.2 | Plus |
ppk20-PA | 587 | CG7577-PA | 78..522 | 57..491 | 623 | 31.6 | Plus |
ppk7-PA | 573 | CG9499-PA | 42..494 | 40..491 | 530 | 26.3 | Plus |