Clone RT06163 Report

Search the DGRC for RT06163

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:61
Well:63
Vector:pCR2.1
Associated Gene/Transcriptppk19-RA
Protein status:RT06163.pep: gold
Sequenced Size:1536

Clone Sequence Records

RT06163.complete Sequence

1536 bp assembled on 2010-02-26

GenBank Submission: BT120380.1

> RT06163.complete
ATGTTGCTGTACACCAAGGAACTTGTGATTCCGCGGCCGAGACCAGGACT
ACTGCGCTTCAGGAACAATCCGCGTGGTATTAAGTTTCGGGAAAAACTGT
GCAACTCCTTTGCCCACTCCAACATCCATGGGATGCAGCACGTCTTCGGG
GAGCAGCATCTCTGGCAGCGCTGCCTGTGGCTCGCCATCGTCCTGGGAGC
GGTGATCACAGGATTCAGTCTGTACACCGTGCTGATGCATCGCCACAGCG
AGCAGCTCCTGGTCAGCCTGATAGAGACCACCCAGTTGCCAGTGTACCAC
ATCGACTTTCCAGCTGTGGCCGTTTGCCCCTGGAATCATTTCAACTGGCA
GAGGGCTCCGTCGGCATTTATCCGCTTTCTGCCACGTCATCCGAATGCCG
AGCTCCGGGAAACATTTCGCCAGCTACTCGCCAGTATGGACATTATGAAC
TTCTCCAACTTTAACCGGATACGGATTCTGACCAAACGAAATCTGACGGG
AATTAGTTATCTAAAAATGACGGACCTGATGAACTTCATGACCTATAGAT
GCGATGAACTCTTCGTCGCCGATTCCTGCGTCTTCGATGAGACTCCCTAC
GACTGCTGCAAACTTTTCGTACGGGAGCAGACGGTGAAGGGCCAGTGCTT
GGTCTTCAACTCCATGATTTCGGAGAACTCGCGCAAAAAGCACCTGATTA
ACCAGTTCTATCCCCACAAGCTGAGCACCGCTGGCGAGGATTCGGGCCTG
AAGTTCACGATCAATGCAAGCTACTCCTTTATGAACAACATAGACGCTCT
GACTCCATTTGGAATGAATCTCATGATTAAGGAACCACGCCAGTGGTCCA
ATGAAATGATGTACCACCTGTACCCGGATACGGAGAACTTTGTTGCTGTG
CATCCGCTGGTCACGGAAACCTCTCCAAATACCTATGAAATGAGTCCCAA
AAAAAGACGTTGCTACTTTGATGATGAAAAGAACCCTACCTTCCAGAACA
CTTCGTTGACTTATAACCGCGAAAACTGCCTGGTGGTGTGCCTCCACTTA
GTTGTGTGGAAGACCTGCCAGTGCTCGCTGCCAGCTTTTCTGCCTCCCAT
TGATGGAGTTCCGGAATGTGGAATCAACGATGCACAATGCTTGGGCAACA
ATTCCGATATATTCACTTACGTGAAGATGGGTGATCAGGAGAAATACATT
AACGACTCACGACAGGGTCACTTTTGTGATTGCCCAGACAATTGCAATTC
ACGGCTGTACGAAATGTCACTTAATGTGCGCAAATTGGATTACCCAAAAA
ACTCGACAGATCAATTGATAAAAGCCCAGGTTTATTATGGCCAACGTGTC
ATGACCAAAATCATTACGAAACTCAAGTACACCAATATAGATTTACTGGC
CAACTTTGGCGGGATCATAAGTCTGTATATAGGGGCCTCCGTCATGAGTT
TTATAGAGCTTTTATTTGTGCTGGGAAAACTGATGTGGGGTTTCATCAGA
GATGCGCGCATAAAATTGAAAGAGTATACTAAGTAG

RT06163.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
ppk19-RA 1536 ppk19-RA 1..1536 1..1536 7680 100 Plus
Bub3-RA 1390 Bub3-RA 1161..1390 1536..1307 1150 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25495069..25495887 1..819 3960 98.9 Plus
chr3R 27901430 chr3R 25496597..25496840 1293..1536 1205 99.6 Plus
chr3R 27901430 chr3R 25496349..25496539 1102..1292 940 99.5 Plus
chr3R 27901430 chr3R 25495957..25496110 820..973 725 98.1 Plus
chr3R 27901430 chr3R 25496172..25496301 973..1102 650 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:43:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29672456..29673274 1..819 4095 100 Plus
3R 32079331 3R 29673980..29674223 1293..1536 1220 100 Plus
3R 32079331 3R 29673732..29673922 1102..1292 955 100 Plus
3R 32079331 3R 29673340..29673493 820..973 770 100 Plus
3R 32079331 3R 29673554..29673683 973..1102 650 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29413287..29414105 1..819 4095 100 Plus
3R 31820162 3R 29414811..29415054 1293..1536 1220 100 Plus
3R 31820162 3R 29414563..29414753 1102..1292 955 100 Plus
3R 31820162 3R 29414171..29414324 820..973 770 100 Plus
3R 31820162 3R 29414385..29414514 973..1102 650 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:50:13 has no hits.

RT06163.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:51:02 Download gff for RT06163.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25495069..25495887 1..819 98 -> Plus
chr3R 25495957..25496109 820..972 98 -> Plus
chr3R 25496172..25496301 973..1102 100 -> Plus
chr3R 25496350..25496539 1103..1292 99 -> Plus
chr3R 25496597..25496840 1293..1536 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-26 14:57:51 Download gff for RT06163.complete
Subject Subject Range Query Range Percent Splice Strand
ppk19-RA 1..1536 1..1536 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:54:58 Download gff for RT06163.complete
Subject Subject Range Query Range Percent Splice Strand
ppk19-RA 1..1536 1..1536 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:30:28 Download gff for RT06163.complete
Subject Subject Range Query Range Percent Splice Strand
ppk19-RA 1..1536 1..1536 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:36:42 Download gff for RT06163.complete
Subject Subject Range Query Range Percent Splice Strand
ppk19-RA 1..1536 1..1536 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-26 14:57:51 Download gff for RT06163.complete
Subject Subject Range Query Range Percent Splice Strand
ppk19-RA 1..1536 1..1536 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:54:57 Download gff for RT06163.complete
Subject Subject Range Query Range Percent Splice Strand
ppk19-RA 1..1536 1..1536 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:28 Download gff for RT06163.complete
Subject Subject Range Query Range Percent Splice Strand
ppk19-RA 1..1536 1..1536 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:42 Download gff for RT06163.complete
Subject Subject Range Query Range Percent Splice Strand
ppk19-RA 1..1536 1..1536 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:51:02 Download gff for RT06163.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29673980..29674223 1293..1536 100   Plus
3R 29673340..29673492 820..972 100 -> Plus
3R 29673554..29673683 973..1102 100 -> Plus
3R 29673733..29673922 1103..1292 100 -> Plus
3R 29672456..29673274 1..819 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:51:02 Download gff for RT06163.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29673980..29674223 1293..1536 100   Plus
3R 29673340..29673492 820..972 100 -> Plus
3R 29673554..29673683 973..1102 100 -> Plus
3R 29673733..29673922 1103..1292 100 -> Plus
3R 29672456..29673274 1..819 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:51:02 Download gff for RT06163.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29673980..29674223 1293..1536 100   Plus
3R 29673340..29673492 820..972 100 -> Plus
3R 29673554..29673683 973..1102 100 -> Plus
3R 29673733..29673922 1103..1292 100 -> Plus
3R 29672456..29673274 1..819 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:28 Download gff for RT06163.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25499276..25499405 973..1102 100 -> Plus
arm_3R 25499455..25499644 1103..1292 100 -> Plus
arm_3R 25499702..25499945 1293..1536 100   Plus
arm_3R 25498178..25498996 1..819 100 -> Plus
arm_3R 25499062..25499214 820..972 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:31:24 Download gff for RT06163.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29413287..29414105 1..819 100 -> Plus
3R 29414171..29414323 820..972 100 -> Plus
3R 29414385..29414514 973..1102 100 -> Plus
3R 29414564..29414753 1103..1292 100 -> Plus
3R 29414811..29415054 1293..1536 100   Plus

RT06163.pep Sequence

Translation from 0 to 1535

> RT06163.pep
MLLYTKELVIPRPRPGLLRFRNNPRGIKFREKLCNSFAHSNIHGMQHVFG
EQHLWQRCLWLAIVLGAVITGFSLYTVLMHRHSEQLLVSLIETTQLPVYH
IDFPAVAVCPWNHFNWQRAPSAFIRFLPRHPNAELRETFRQLLASMDIMN
FSNFNRIRILTKRNLTGISYLKMTDLMNFMTYRCDELFVADSCVFDETPY
DCCKLFVREQTVKGQCLVFNSMISENSRKKHLINQFYPHKLSTAGEDSGL
KFTINASYSFMNNIDALTPFGMNLMIKEPRQWSNEMMYHLYPDTENFVAV
HPLVTETSPNTYEMSPKKRRCYFDDEKNPTFQNTSLTYNRENCLVVCLHL
VVWKTCQCSLPAFLPPIDGVPECGINDAQCLGNNSDIFTYVKMGDQEKYI
NDSRQGHFCDCPDNCNSRLYEMSLNVRKLDYPKNSTDQLIKAQVYYGQRV
MTKIITKLKYTNIDLLANFGGIISLYIGASVMSFIELLFVLGKLMWGFIR
DARIKLKEYTK*

RT06163.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23358-PA 509 GF23358-PA 1..508 1..507 1850 66.8 Plus
Dana\GF22877-PA 554 GF22877-PA 32..493 40..491 632 32.5 Plus
Dana\GF15394-PA 584 GF15394-PA 52..501 40..491 538 27.2 Plus
Dana\GF11173-PA 444 GF11173-PA 2..437 57..507 371 25.8 Plus
Dana\GF23355-PA 479 GF23355-PA 23..413 7..388 352 26.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11677-PA 511 GG11677-PA 1..511 1..511 2431 86.3 Plus
Dere\GG23630-PA 577 GG23630-PA 46..498 40..491 524 26.5 Plus
Dere\GG11673-PA 554 GG11673-PA 79..534 57..508 510 28.6 Plus
Dere\GG10406-PA 496 GG10406-PA 40..475 38..489 384 26.1 Plus
Dere\GG24007-PA 531 GG24007-PA 40..519 12..491 284 24.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18908-PA 519 GH18908-PA 1..504 1..501 1433 53.8 Plus
Dgri\GH18687-PA 543 GH18687-PA 33..478 40..491 638 32.3 Plus
Dgri\GH23278-PA 242 GH23278-PA 50..242 176..369 606 57.7 Plus
Dgri\GH18904-PA 551 GH18904-PA 1..521 2..498 480 25.5 Plus
Dgri\GH10991-PA 570 GH10991-PA 44..493 40..491 478 25.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
ppk19-PA 511 CG18287-PA 1..511 1..511 2757 100 Plus
ppk20-PB 564 CG7577-PB 38..499 40..491 653 32.1 Plus
ppk20-PC 565 CG7577-PC 38..500 40..491 636 31.2 Plus
ppk20-PA 587 CG7577-PA 78..522 57..491 623 31.6 Plus
ppk7-PA 573 CG9499-PA 42..494 40..491 530 26.3 Plus
ppk21-PB 548 CG12048-PB 53..524 38..503 527 27.6 Plus
ppk21-PA 550 CG12048-PA 53..526 38..503 522 27.4 Plus
ppk14-PB 504 CG9501-PB 47..482 38..489 392 26 Plus
ppk16-PA 531 CG34059-PA 52..519 29..491 312 24.9 Plus
ppk-PA 606 CG3478-PA 73..587 40..503 253 22.8 Plus
ppk26-PC 597 CG8546-PC 77..591 39..511 250 19.8 Plus
ppk11-PA 516 CG34058-PA 100..478 40..489 243 20.6 Plus
ppk23-PA 477 CG8527-PA 35..450 37..489 242 21.3 Plus
ppk23-PD 566 CG8527-PD 35..450 37..489 242 21.3 Plus
Nach-PD 535 CG8178-PD 32..492 38..495 223 22.3 Plus
ppk30-PB 457 CG18110-PB 73..444 91..488 215 24.3 Plus
ppk30-PA 457 CG18110-PA 73..444 91..488 215 24.3 Plus
ppk15-PB 483 CG14239-PB 16..465 25..489 215 21.8 Plus
ppk23-PB 502 CG8527-PB 35..475 37..489 211 20 Plus
ppk23-PC 591 CG8527-PC 35..475 37..489 211 20 Plus
ppk6-PA 498 CG11209-PA 63..475 57..489 187 22 Plus
ppk28-PA 606 CG4805-PA 46..510 39..491 184 19.9 Plus
ppk18-PA 553 CG44152-PA 13..511 29..491 181 20.9 Plus
ppk31-PB 421 CG31065-PB 108..391 174..490 178 22.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23407-PA 514 GI23407-PA 1..510 1..506 1393 50.7 Plus
Dmoj\GI24197-PA 558 GI24197-PA 36..493 40..491 675 33.3 Plus
Dmoj\GI17506-PA 571 GI17506-PA 45..510 40..506 516 26 Plus
Dmoj\GI23122-PA 555 GI23122-PA 53..529 38..508 497 27 Plus
Dmoj\GI11553-PA 467 GI11553-PA 44..462 40..467 326 26 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13899-PA 512 GL13899-PA 1..510 1..509 1977 69.5 Plus
Dper\GL26268-PA 572 GL26268-PA 9..487 11..491 505 26 Plus
Dper\GL13896-PA 636 GL13896-PA 5..490 8..470 444 25.5 Plus
Dper\GL25522-PA 499 GL25522-PA 47..477 37..483 338 26.4 Plus
Dper\GL19209-PA 529 GL19209-PA 34..517 11..491 270 23.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14875-PA 512 GA14875-PA 1..510 1..509 1967 69.1 Plus
Dpse\GA20451-PA 561 GA20451-PA 33..494 40..491 632 32.3 Plus
Dpse\GA11359-PA 553 GA11359-PA 5..523 8..503 513 26.4 Plus
Dpse\GA21835-PA 572 GA21835-PA 9..487 11..491 505 26 Plus
Dpse\GA21837-PA 503 GA21837-PA 47..477 37..483 346 26.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12801-PA 511 GM12801-PA 1..511 1..511 2562 91.4 Plus
Dsec\GM12234-PA 564 GM12234-PA 38..499 40..491 629 32 Plus
Dsec\GM12798-PA 553 GM12798-PA 53..533 38..508 551 29 Plus
Dsec\GM17947-PA 572 GM17947-PA 41..493 40..491 519 26.3 Plus
Dsec\GM18622-PA 463 GM18622-PA 47..460 38..467 323 24.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21448-PA 290 GD21448-PA 1..290 222..511 1459 91.7 Plus
Dsim\GD21445-PA 553 GD21445-PA 53..533 38..508 531 28.4 Plus
Dsim\GD22586-PA 605 GD22586-PA 74..526 40..491 521 26.7 Plus
Dsim\GD23404-PA 504 GD23404-PA 47..482 38..489 383 26.4 Plus
Dsim\GD22336-PA 531 GD22336-PA 44..519 19..491 282 24.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10613-PA 514 GJ10613-PA 1..511 2..507 1460 53.5 Plus
Dvir\GJ10545-PA 559 GJ10545-PA 33..494 40..491 643 32.1 Plus
Dvir\GJ10610-PA 558 GJ10610-PA 1..510 2..489 552 27.3 Plus
Dvir\GJ15216-PA 571 GJ15216-PA 45..511 40..507 521 26.2 Plus
Dvir\GJ12828-PA 501 GJ12828-PA 42..481 40..489 434 26.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11909-PA 517 GK11909-PA 1..512 1..507 1621 58.5 Plus
Dwil\GK11911-PA 516 GK11911-PA 1..511 1..507 1609 58.1 Plus
Dwil\GK11175-PA 560 GK11175-PA 26..498 40..491 644 32.9 Plus
Dwil\GK11905-PA 552 GK11905-PA 55..524 40..503 510 26.1 Plus
Dwil\GK15363-PA 567 GK15363-PA 44..493 40..491 510 26.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23866-PA 511 GE23866-PA 1..511 1..511 2438 86.9 Plus
Dyak\GE23863-PA 553 GE23863-PA 53..533 38..508 507 27.2 Plus
Dyak\GE18451-PA 556 GE18451-PA 52..477 40..491 397 23.6 Plus
Dyak\GE13813-PA 492 GE13813-PA 42..475 40..489 393 26.7 Plus
Dyak\GE10443-PA 458 GE10443-PA 1..207 57..260 346 33.8 Plus

RT06163.hyp Sequence

Translation from 1 to 1535

> RT06163.hyp
MLLYTKELVIPRPRPGLLRFRNNPRGIKFREKLCNSFAHSNIHGMQHVFG
EQHLWQRCLWLAIVLGAVITGFSLYTVLMHRHSEQLLVSLIETTQLPVYH
IDFPAVAVCPWNHFNWQRAPSAFIRFLPRHPNAELRETFRQLLASMDIMN
FSNFNRIRILTKRNLTGISYLKMTDLMNFMTYRCDELFVADSCVFDETPY
DCCKLFVREQTVKGQCLVFNSMISENSRKKHLINQFYPHKLSTAGEDSGL
KFTINASYSFMNNIDALTPFGMNLMIKEPRQWSNEMMYHLYPDTENFVAV
HPLVTETSPNTYEMSPKKRRCYFDDEKNPTFQNTSLTYNRENCLVVCLHL
VVWKTCQCSLPAFLPPIDGVPECGINDAQCLGNNSDIFTYVKMGDQEKYI
NDSRQGHFCDCPDNCNSRLYEMSLNVRKLDYPKNSTDQLIKAQVYYGQRV
MTKIITKLKYTNIDLLANFGGIISLYIGASVMSFIELLFVLGKLMWGFIR
DARIKLKEYTK*

RT06163.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
ppk19-PA 511 CG18287-PA 1..511 1..511 2757 100 Plus
ppk20-PB 564 CG7577-PB 38..499 40..491 653 32.1 Plus
ppk20-PC 565 CG7577-PC 38..500 40..491 636 31.2 Plus
ppk20-PA 587 CG7577-PA 78..522 57..491 623 31.6 Plus
ppk7-PA 573 CG9499-PA 42..494 40..491 530 26.3 Plus