BDGP Sequence Production Resources |
Search the DGRC for RT06416
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 64 |
Well: | 16 |
Vector: | pCR2.1 |
Associated Gene/Transcript | Obp46a-RA |
Protein status: | RT06416.pep: full length peptide match |
Sequenced Size: | 597 |
597 bp assembled on 2010-03-03
GenBank Submission: BT122055.1
> RT06416.complete ATGTGCTCCCAACTGTTCGCATTTCTGCTCCTCCTTTTGACCGCTTTTGT GACGGGTAGAAGTACTCCACCGGCGTTGGATGAAGACTGTGAACTGAATT CTGTAGATACAATGCATGATTTCTGCTGCGACCTGCACGACGAGAGTCCC CAGTTTAGCGACTGCCAGATGGAGTGGCACGAAAAGATTCCATACGAGAC GGATGAAGAGGAGCAGACGTACATGTTTTGCACCGCAGAGTGCAGTTTCA ACAGTACGAACTTCTTGGGCAGGGACCGCCGTTCACTGAATCTCAATGAG GTAAAGGAGCACTTGGAAAGCGACCTGGTCAACGATGCGGACATTAAGCT TCTCTATGACACCTATGTCAAGTGCGACAAGCATGCGCTCTCACTGATGC CGCACAAAGGTGTGAAGCAGCTATCCAAACGTCTTTCGCGTCTTGGCTGT CATCCGTATCCCGGACTGGTCCTCGAGTGCGTGGCCAACGAGATGATCCT GCACTGTCCCACCAAGCGCTTCCGTCAAACAGCCCAGTGCGAAGAGACAC GCAATCATTTGAAGCAATGTATGCAGTATCTAAAGTACAAGTCCTAG
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 6198689..6198901 | 597..385 | 1050 | 99.5 | Minus |
chr2R | 21145070 | chr2R | 6198959..6199115 | 385..229 | 785 | 100 | Minus |
chr2R | 21145070 | chr2R | 6199430..6199543 | 114..1 | 570 | 100 | Minus |
chr2R | 21145070 | chr2R | 6199167..6199281 | 228..114 | 560 | 99.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 10311172..10311384 | 597..385 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 10311442..10311598 | 385..229 | 785 | 100 | Minus |
2R | 25286936 | 2R | 10311650..10311764 | 228..114 | 575 | 100 | Minus |
2R | 25286936 | 2R | 10311910..10312023 | 114..1 | 570 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 10312371..10312583 | 597..385 | 1065 | 100 | Minus |
2R | 25260384 | 2R | 10312641..10312797 | 385..229 | 785 | 100 | Minus |
2R | 25260384 | 2R | 10312849..10312963 | 228..114 | 575 | 100 | Minus |
2R | 25260384 | 2R | 10313109..10313222 | 114..1 | 570 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 3290..3332 | 240..198 | 107 | 72.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 6198689..6198900 | 386..597 | 99 | <- | Minus |
chr2R | 6198959..6199115 | 229..385 | 100 | <- | Minus |
chr2R | 6199167..6199280 | 115..228 | 99 | <- | Minus |
chr2R | 6199430..6199543 | 1..114 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp46a-RA | 1..597 | 1..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp46a-RA | 1..597 | 1..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp46a-RA | 1..597 | 1..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp46a-RA | 1..597 | 1..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp46a-RA | 1..597 | 1..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp46a-RA | 1..597 | 1..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp46a-RA | 1..597 | 1..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp46a-RA | 1..597 | 1..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10311172..10311383 | 386..597 | 100 | <- | Minus |
2R | 10311442..10311598 | 229..385 | 100 | <- | Minus |
2R | 10311650..10311763 | 115..228 | 100 | <- | Minus |
2R | 10311910..10312023 | 1..114 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10311172..10311383 | 386..597 | 100 | <- | Minus |
2R | 10311442..10311598 | 229..385 | 100 | <- | Minus |
2R | 10311650..10311763 | 115..228 | 100 | <- | Minus |
2R | 10311910..10312023 | 1..114 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10311172..10311383 | 386..597 | 100 | <- | Minus |
2R | 10311442..10311598 | 229..385 | 100 | <- | Minus |
2R | 10311650..10311763 | 115..228 | 100 | <- | Minus |
2R | 10311910..10312023 | 1..114 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 6198947..6199103 | 229..385 | 100 | <- | Minus |
arm_2R | 6199155..6199268 | 115..228 | 100 | <- | Minus |
arm_2R | 6199415..6199528 | 1..114 | 100 | Minus | |
arm_2R | 6198677..6198888 | 386..597 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10312371..10312582 | 386..597 | 100 | <- | Minus |
2R | 10312641..10312797 | 229..385 | 100 | <- | Minus |
2R | 10312849..10312962 | 115..228 | 100 | <- | Minus |
2R | 10313109..10313222 | 1..114 | 100 | Minus |
Translation from 0 to 596
> RT06416.pep MCSQLFAFLLLLLTAFVTGRSTPPALDEDCELNSVDTMHDFCCDLHDESP QFSDCQMEWHEKIPYETDEEEQTYMFCTAECSFNSTNFLGRDRRSLNLNE VKEHLESDLVNDADIKLLYDTYVKCDKHALSLMPHKGVKQLSKRLSRLGC HPYPGLVLECVANEMILHCPTKRFRQTAQCEETRNHLKQCMQYLKYKS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12128-PA | 438 | GF12128-PA | 273..438 | 33..198 | 705 | 74.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25220-PA | 198 | GG25220-PA | 1..198 | 1..198 | 935 | 89.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20112-PA | 195 | GH20112-PA | 22..194 | 24..196 | 644 | 67.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Obp46a-PA | 198 | CG12905-PA | 1..198 | 1..198 | 1083 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20206-PA | 194 | GI20206-PA | 22..190 | 24..192 | 601 | 63.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11604-PA | 197 | GL11604-PA | 11..197 | 9..195 | 706 | 69.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\Obp46a-PA | 200 | GA11895-PA | 10..200 | 7..198 | 713 | 67.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20539-PA | 198 | GM20539-PA | 1..198 | 1..198 | 964 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Obp46a-PA | 198 | GD25996-PA | 1..198 | 1..198 | 1026 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Obp46a-PA | 192 | GJ20154-PA | 19..191 | 24..196 | 650 | 67.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18014-PA | 196 | GK18014-PA | 7..196 | 10..196 | 666 | 63.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21655-PA | 198 | GE21655-PA | 1..198 | 1..198 | 908 | 89.9 | Plus |
Translation from 1 to 596
> RT06416.hyp MCSQLFAFLLLLLTAFVTGRSTPPALDEDCELNSVDTMHDFCCDLHDESP QFSDCQMEWHEKIPYETDEEEQTYMFCTAECSFNSTNFLGRDRRSLNLNE VKEHLESDLVNDADIKLLYDTYVKCDKHALSLMPHKGVKQLSKRLSRLGC HPYPGLVLECVANEMILHCPTKRFRQTAQCEETRNHLKQCMQYLKYKS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Obp46a-PA | 198 | CG12905-PA | 1..198 | 1..198 | 1083 | 100 | Plus |