BDGP Sequence Production Resources |
Search the DGRC for RT06576
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 65 |
Well: | 76 |
Vector: | pCR2.1 |
Associated Gene/Transcript | upd2-RB |
Protein status: | RT06576.pep: full length peptide match |
Sequenced Size: | 1113 |
1113 bp assembled on 2011-07-27
GenBank Submission: BT122045.2
> RT06576.complete ATGATCCTGAGCGTCGTGATGCCATTCACCAAGGCGCGACACTTGCGCGA CCAGGTGGCACTGGACTACGCCTACGACGAGGACAACTCCGGCCGATCTT CCTCGTCGTCATCGTCATCCTCATCATCGGGTGGCGACATCCTGCCCGCC TTCGATGTCAATCCGTATCGCGGTCTGGCCGATAGCTTCGGCGAGGGCAG CTACGACAGTGATATGAGTCTCAGCGAGAGTAGCTACGAGGAGATCGCCC AGGCGGCCATCCGGGCTGCCAGGCGGGAGATGCGCCGTCAGAGGACGCGA CACGCGCGCAGCCACAACCTGCGACTCTTCTCCGGCAAATCAGAGATCCC GGAGTGGGAGAACCCGTGCGGAGGCACCTACACGCCCGACGAGAGCCTCA GCGATAGCAGCGCCAGCCAAGGACGAGTTATCAAGCGCAAGCACCTCGAA AACTTGCGGAACATCACGATGAGCGAATACCAAGATATAACCCACCGCGC CACCCTGGAGTACGGCAATCTGCAGCACTGGCAGCGCGAGTACAAGTTCC TGCCGAACATGACGAGGCCCACAAGTGCGGTGAAGCTAAAGACTTGGTAC CGCCACATGCAGACCTTCGTGGGCAGCTTCTCATATCTGGGACGGGCGCA GTACAAGTTCCGCAAGGATCAGCAGAAGAGCCTCAACGAGGCGGTCACCA AGGAGCTGCACGACCTGCTGGTCAGCGCGCGCTATATGCTCTGCGAGATC GAGTTGACCATAAACGCCTCCTATCCGAACAGCAATGGTGCGAAGCTGAG CCGCGTTAGCCGGCAGGCGATGGAGGAGCGTCTCAACTTTCACACGCCAG CCAACGGATCCATGGAGGCGGACCAGCGCGACCTGAAGGTCAGCAAGGAG CTGTACTTCCAGTATCTGAACAACGTGTGGAAGACCCTGCACCGTGTCCT GCGGCGACCGCGACGCAATAGTGCCGAGCGGCGACACCTGGCGGCGATTC ACGGAACTGGTGCGAGCGGGCTGCGGGCGGGCAGCTCGGAAATGCTCGAC GTGGGCTCCTCGAACGGATCCGGTGGCAGTTCCGGCTCCGATGGCGGATC CAATGAGTCTTGA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 18130494..18131027 | 1112..579 | 2640 | 99.6 | Minus |
chrX | 22417052 | chrX | 18131709..18132149 | 441..1 | 2205 | 100 | Minus |
chrX | 22417052 | chrX | 18131223..18131364 | 581..440 | 710 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 18249446..18249980 | 1113..579 | 2675 | 100 | Minus |
X | 23527363 | X | 18250663..18251103 | 441..1 | 2205 | 100 | Minus |
X | 23527363 | X | 18250176..18250317 | 581..440 | 710 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 18131225..18131362 | 442..579 | 100 | <- | Minus |
chrX | 18130494..18131026 | 580..1112 | 99 | <- | Minus |
chrX | 18131709..18132149 | 1..441 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
upd2-RB | 1..1111 | 1..1111 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
upd2-RB | 1..1113 | 1..1113 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
upd2-RB | 1..1113 | 1..1113 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
upd2-RB | 1..1113 | 1..1113 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
upd2-RB | 1..1111 | 1..1111 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
upd2-RB | 1..1112 | 1..1112 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
upd2-RB | 174..1285 | 1..1112 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
upd2-RB | 174..1285 | 1..1112 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18241349..18241881 | 580..1112 | 100 | <- | Minus |
X | 18242080..18242217 | 442..579 | 100 | <- | Minus |
X | 18242565..18243005 | 1..441 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18241349..18241881 | 580..1112 | 100 | <- | Minus |
X | 18242080..18242217 | 442..579 | 100 | <- | Minus |
X | 18242565..18243005 | 1..441 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18241349..18241881 | 580..1112 | 100 | <- | Minus |
X | 18242080..18242217 | 442..579 | 100 | <- | Minus |
X | 18242565..18243005 | 1..441 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 18135382..18135914 | 580..1112 | 100 | <- | Minus |
arm_X | 18136113..18136250 | 442..579 | 100 | <- | Minus |
arm_X | 18136598..18137038 | 1..441 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18249447..18249979 | 580..1112 | 100 | <- | Minus |
X | 18250178..18250315 | 442..579 | 100 | <- | Minus |
X | 18250663..18251103 | 1..441 | 100 | Minus |
Translation from 0 to 1112
> RT06576.pep MILSVVMPFTKARHLRDQVALDYAYDEDNSGRSSSSSSSSSSSGGDILPA FDVNPYRGLADSFGEGSYDSDMSLSESSYEEIAQAAIRAARREMRRQRTR HARSHNLRLFSGKSEIPEWENPCGGTYTPDESLSDSSASQGRVIKRKHLE NLRNITMSEYQDITHRATLEYGNLQHWQREYKFLPNMTRPTSAVKLKTWY RHMQTFVGSFSYLGRAQYKFRKDQQKSLNEAVTKELHDLLVSARYMLCEI ELTINASYPNSNGAKLSRVSRQAMEERLNFHTPANGSMEADQRDLKVSKE LYFQYLNNVWKTLHRVLRRPRRNSAERRHLAAIHGTGASGLRAGSSEMLD VGSSNGSGGSSGSDGGSNES*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22520-PA | 410 | GF22520-PA | 1..351 | 1..319 | 1031 | 63.1 | Plus |
Dana\GF22431-PA | 404 | GF22431-PA | 92..335 | 71..283 | 176 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18137-PA | 226 | GG18137-PA | 1..190 | 1..193 | 753 | 90.2 | Plus |
Dere\GG18131-PA | 428 | GG18131-PA | 61..231 | 85..257 | 242 | 35.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17793-PA | 364 | GH17793-PA | 3..303 | 2..306 | 617 | 47.1 | Plus |
Dgri\GH17790-PA | 458 | GH17790-PA | 64..315 | 95..315 | 301 | 32.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
upd2-PC | 406 | CG5988-PC | 37..406 | 1..370 | 1909 | 100 | Plus |
upd1-PC | 413 | CG5993-PC | 51..338 | 75..328 | 281 | 29.1 | Plus |
upd1-PB | 413 | CG5993-PB | 51..338 | 75..328 | 281 | 29.1 | Plus |
upd1-PA | 413 | CG5993-PA | 51..338 | 75..328 | 281 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15132-PA | 417 | GI15132-PA | 58..413 | 10..333 | 825 | 49.3 | Plus |
Dmoj\GI15131-PA | 380 | GI15131-PA | 113..320 | 82..289 | 266 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27046-PA | 447 | GL27046-PA | 63..447 | 1..370 | 1157 | 66.8 | Plus |
Dper\GL27044-PA | 539 | GL27044-PA | 186..440 | 93..322 | 299 | 30.8 | Plus |
Dper\GL26967-PA | 317 | GL26967-PA | 65..315 | 118..329 | 213 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19279-PA | 386 | GA19279-PA | 1..386 | 1..370 | 1258 | 70.6 | Plus |
Dpse\GA19283-PA | 539 | GA19283-PA | 186..440 | 93..322 | 298 | 30.8 | Plus |
Dpse\GA22327-PA | 382 | GA22327-PA | 115..363 | 118..328 | 214 | 31.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22829-PA | 268 | GM22829-PA | 44..234 | 1..193 | 799 | 94.8 | Plus |
Dsec\GM22824-PA | 401 | GM22824-PA | 72..323 | 95..323 | 268 | 30.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15650-PA | 410 | GD15650-PA | 43..410 | 1..370 | 1918 | 97.3 | Plus |
Dsim\GD15648-PA | 413 | GD15648-PA | 72..333 | 95..323 | 268 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18992-PA | 401 | GJ18992-PA | 11..393 | 10..370 | 855 | 53.6 | Plus |
Dvir\GJ18988-PA | 458 | GJ18988-PA | 61..327 | 82..315 | 281 | 30.1 | Plus |
Translation from 1 to 1110
> RT06576.hyp MILSVVMPFTKARHLRDQVALDYAYDEDNSGRSSSSSSSSSSSGGDILPA FDVNPYRGLADSFGEGSYDSDMSLSESSYEEIAQAAIRAARREMRRQRTR HARSHNLRLFSGKSEIPEWENPCGGTYTPDESLSDSSASQGRVIKRKHLE NLRNITMSEYQDITHRATLEYGNLQHWQREYKFLPNMTRPTSAVKLKTWY RHMQTFVGSFSYLGRAQYKFRKDQQKSLNEAVTKELHDLLVSARYMLCEI ELTINASYPNSNGAKLSRVSRQAMEERLNFHTPANGSMEADQRDLKVSKE LYFQYLNNVWKTLHRVLRRPRRNSAERRHLAAIHGTGASGLRAGSSEMLD VGSSNGSGGSSGSDGGSNES
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
upd2-PB | 370 | CG5988-PB | 1..370 | 1..370 | 1909 | 100 | Plus |
os-PC | 413 | CG5993-PC | 51..338 | 75..328 | 281 | 29.1 | Plus |
os-PB | 413 | CG5993-PB | 51..338 | 75..328 | 281 | 29.1 | Plus |
os-PA | 413 | CG5993-PA | 51..338 | 75..328 | 281 | 29.1 | Plus |