Clone RT06576 Report

Search the DGRC for RT06576

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:65
Well:76
Vector:pCR2.1
Associated Gene/Transcriptupd2-RB
Protein status:RT06576.pep: full length peptide match
Sequenced Size:1113

Clone Sequence Records

RT06576.complete Sequence

1113 bp assembled on 2011-07-27

GenBank Submission: BT122045.2

> RT06576.complete
ATGATCCTGAGCGTCGTGATGCCATTCACCAAGGCGCGACACTTGCGCGA
CCAGGTGGCACTGGACTACGCCTACGACGAGGACAACTCCGGCCGATCTT
CCTCGTCGTCATCGTCATCCTCATCATCGGGTGGCGACATCCTGCCCGCC
TTCGATGTCAATCCGTATCGCGGTCTGGCCGATAGCTTCGGCGAGGGCAG
CTACGACAGTGATATGAGTCTCAGCGAGAGTAGCTACGAGGAGATCGCCC
AGGCGGCCATCCGGGCTGCCAGGCGGGAGATGCGCCGTCAGAGGACGCGA
CACGCGCGCAGCCACAACCTGCGACTCTTCTCCGGCAAATCAGAGATCCC
GGAGTGGGAGAACCCGTGCGGAGGCACCTACACGCCCGACGAGAGCCTCA
GCGATAGCAGCGCCAGCCAAGGACGAGTTATCAAGCGCAAGCACCTCGAA
AACTTGCGGAACATCACGATGAGCGAATACCAAGATATAACCCACCGCGC
CACCCTGGAGTACGGCAATCTGCAGCACTGGCAGCGCGAGTACAAGTTCC
TGCCGAACATGACGAGGCCCACAAGTGCGGTGAAGCTAAAGACTTGGTAC
CGCCACATGCAGACCTTCGTGGGCAGCTTCTCATATCTGGGACGGGCGCA
GTACAAGTTCCGCAAGGATCAGCAGAAGAGCCTCAACGAGGCGGTCACCA
AGGAGCTGCACGACCTGCTGGTCAGCGCGCGCTATATGCTCTGCGAGATC
GAGTTGACCATAAACGCCTCCTATCCGAACAGCAATGGTGCGAAGCTGAG
CCGCGTTAGCCGGCAGGCGATGGAGGAGCGTCTCAACTTTCACACGCCAG
CCAACGGATCCATGGAGGCGGACCAGCGCGACCTGAAGGTCAGCAAGGAG
CTGTACTTCCAGTATCTGAACAACGTGTGGAAGACCCTGCACCGTGTCCT
GCGGCGACCGCGACGCAATAGTGCCGAGCGGCGACACCTGGCGGCGATTC
ACGGAACTGGTGCGAGCGGGCTGCGGGCGGGCAGCTCGGAAATGCTCGAC
GTGGGCTCCTCGAACGGATCCGGTGGCAGTTCCGGCTCCGATGGCGGATC
CAATGAGTCTTGA

RT06576.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
upd2.f 2121 upd2.f 315..1425 1..1111 5555 100 Plus
upd2.b 1715 upd2.b 315..1425 1..1111 5555 100 Plus
upd2.e 1936 upd2.e 315..1425 1..1111 5555 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18130494..18131027 1112..579 2640 99.6 Minus
chrX 22417052 chrX 18131709..18132149 441..1 2205 100 Minus
chrX 22417052 chrX 18131223..18131364 581..440 710 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:43:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18241348..18241882 1113..579 2675 100 Minus
X 23542271 X 18242565..18243005 441..1 2205 100 Minus
X 23542271 X 18242078..18242219 581..440 710 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18249446..18249980 1113..579 2675 100 Minus
X 23527363 X 18250663..18251103 441..1 2205 100 Minus
X 23527363 X 18250176..18250317 581..440 710 100 Minus
Blast to na_te.dros performed on 2019-03-15 10:50:53 has no hits.

RT06576.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:51:48 Download gff for RT06576.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18131225..18131362 442..579 100 <- Minus
chrX 18130494..18131026 580..1112 99 <- Minus
chrX 18131709..18132149 1..441 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-03-03 12:43:45 Download gff for RT06576.complete
Subject Subject Range Query Range Percent Splice Strand
upd2-RB 1..1111 1..1111 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-07-27 09:25:32 Download gff for RT06576.complete
Subject Subject Range Query Range Percent Splice Strand
upd2-RB 1..1113 1..1113 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:26:45 Download gff for RT06576.complete
Subject Subject Range Query Range Percent Splice Strand
upd2-RB 1..1113 1..1113 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:13:30 Download gff for RT06576.complete
Subject Subject Range Query Range Percent Splice Strand
upd2-RB 1..1113 1..1113 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-03-03 12:43:41 Download gff for RT06576.complete
Subject Subject Range Query Range Percent Splice Strand
upd2-RB 1..1111 1..1111 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-27 09:25:32 Download gff for RT06576.complete
Subject Subject Range Query Range Percent Splice Strand
upd2-RB 1..1112 1..1112 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:26:45 Download gff for RT06576.complete
Subject Subject Range Query Range Percent Splice Strand
upd2-RB 174..1285 1..1112 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:30 Download gff for RT06576.complete
Subject Subject Range Query Range Percent Splice Strand
upd2-RB 174..1285 1..1112 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:48 Download gff for RT06576.complete
Subject Subject Range Query Range Percent Splice Strand
X 18241349..18241881 580..1112 100 <- Minus
X 18242080..18242217 442..579 100 <- Minus
X 18242565..18243005 1..441 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:48 Download gff for RT06576.complete
Subject Subject Range Query Range Percent Splice Strand
X 18241349..18241881 580..1112 100 <- Minus
X 18242080..18242217 442..579 100 <- Minus
X 18242565..18243005 1..441 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:48 Download gff for RT06576.complete
Subject Subject Range Query Range Percent Splice Strand
X 18241349..18241881 580..1112 100 <- Minus
X 18242080..18242217 442..579 100 <- Minus
X 18242565..18243005 1..441 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:26:45 Download gff for RT06576.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18135382..18135914 580..1112 100 <- Minus
arm_X 18136113..18136250 442..579 100 <- Minus
arm_X 18136598..18137038 1..441 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:09:47 Download gff for RT06576.complete
Subject Subject Range Query Range Percent Splice Strand
X 18249447..18249979 580..1112 100 <- Minus
X 18250178..18250315 442..579 100 <- Minus
X 18250663..18251103 1..441 100   Minus

RT06576.pep Sequence

Translation from 0 to 1112

> RT06576.pep
MILSVVMPFTKARHLRDQVALDYAYDEDNSGRSSSSSSSSSSSGGDILPA
FDVNPYRGLADSFGEGSYDSDMSLSESSYEEIAQAAIRAARREMRRQRTR
HARSHNLRLFSGKSEIPEWENPCGGTYTPDESLSDSSASQGRVIKRKHLE
NLRNITMSEYQDITHRATLEYGNLQHWQREYKFLPNMTRPTSAVKLKTWY
RHMQTFVGSFSYLGRAQYKFRKDQQKSLNEAVTKELHDLLVSARYMLCEI
ELTINASYPNSNGAKLSRVSRQAMEERLNFHTPANGSMEADQRDLKVSKE
LYFQYLNNVWKTLHRVLRRPRRNSAERRHLAAIHGTGASGLRAGSSEMLD
VGSSNGSGGSSGSDGGSNES*

RT06576.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22520-PA 410 GF22520-PA 1..351 1..319 1031 63.1 Plus
Dana\GF22431-PA 404 GF22431-PA 92..335 71..283 176 29.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18137-PA 226 GG18137-PA 1..190 1..193 753 90.2 Plus
Dere\GG18131-PA 428 GG18131-PA 61..231 85..257 242 35.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17793-PA 364 GH17793-PA 3..303 2..306 617 47.1 Plus
Dgri\GH17790-PA 458 GH17790-PA 64..315 95..315 301 32.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
upd2-PC 406 CG5988-PC 37..406 1..370 1909 100 Plus
upd1-PC 413 CG5993-PC 51..338 75..328 281 29.1 Plus
upd1-PB 413 CG5993-PB 51..338 75..328 281 29.1 Plus
upd1-PA 413 CG5993-PA 51..338 75..328 281 29.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15132-PA 417 GI15132-PA 58..413 10..333 825 49.3 Plus
Dmoj\GI15131-PA 380 GI15131-PA 113..320 82..289 266 33 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27046-PA 447 GL27046-PA 63..447 1..370 1157 66.8 Plus
Dper\GL27044-PA 539 GL27044-PA 186..440 93..322 299 30.8 Plus
Dper\GL26967-PA 317 GL26967-PA 65..315 118..329 213 32.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19279-PA 386 GA19279-PA 1..386 1..370 1258 70.6 Plus
Dpse\GA19283-PA 539 GA19283-PA 186..440 93..322 298 30.8 Plus
Dpse\GA22327-PA 382 GA22327-PA 115..363 118..328 214 31.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22829-PA 268 GM22829-PA 44..234 1..193 799 94.8 Plus
Dsec\GM22824-PA 401 GM22824-PA 72..323 95..323 268 30.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15650-PA 410 GD15650-PA 43..410 1..370 1918 97.3 Plus
Dsim\GD15648-PA 413 GD15648-PA 72..333 95..323 268 30 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18992-PA 401 GJ18992-PA 11..393 10..370 855 53.6 Plus
Dvir\GJ18988-PA 458 GJ18988-PA 61..327 82..315 281 30.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19872-PA 377 GK19872-PA 3..332 2..328 989 64.1 Plus
Dwil\GK19868-PA 445 GK19868-PA 82..345 93..328 250 31.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15548-PA 372 GE15548-PA 1..351 1..351 1586 92.6 Plus
Dyak\GE15539-PA 442 GE15539-PA 60..357 84..329 262 29.7 Plus

RT06576.hyp Sequence

Translation from 1 to 1110

> RT06576.hyp
MILSVVMPFTKARHLRDQVALDYAYDEDNSGRSSSSSSSSSSSGGDILPA
FDVNPYRGLADSFGEGSYDSDMSLSESSYEEIAQAAIRAARREMRRQRTR
HARSHNLRLFSGKSEIPEWENPCGGTYTPDESLSDSSASQGRVIKRKHLE
NLRNITMSEYQDITHRATLEYGNLQHWQREYKFLPNMTRPTSAVKLKTWY
RHMQTFVGSFSYLGRAQYKFRKDQQKSLNEAVTKELHDLLVSARYMLCEI
ELTINASYPNSNGAKLSRVSRQAMEERLNFHTPANGSMEADQRDLKVSKE
LYFQYLNNVWKTLHRVLRRPRRNSAERRHLAAIHGTGASGLRAGSSEMLD
VGSSNGSGGSSGSDGGSNES

RT06576.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
upd2-PB 370 CG5988-PB 1..370 1..370 1909 100 Plus
os-PC 413 CG5993-PC 51..338 75..328 281 29.1 Plus
os-PB 413 CG5993-PB 51..338 75..328 281 29.1 Plus
os-PA 413 CG5993-PA 51..338 75..328 281 29.1 Plus