Clone Sequence Records
RT06651.complete Sequence
1662 bp assembled on 2011-07-27
GenBank Submission: BT122052.2
> RT06651.complete
ATGAAGTCGATTCAATTGAGTTTTCTACTCTTGTCAGTGCTCTTCAGCAG
TTCGCATCAGCTTTCCAAGCCGGAAGATCCAACCTATACGGCAGCAGTGG
TGGAGCACAGCCAGCCAGTGGGCGATTCTCCGCGTGCACGCACCACCTCA
GCTTCGGAATCCTTTCAAAAGATCATCCGTGAAGTCGGCGATGTGGACAT
CATAGTGTTTCCCGAGCACATACTCAATAGTCAGGCCACAGCCACTTTTG
TGCCCCATGAGTCGCAGAACATAACGCCCTGCTACCAAACGGACTATGAG
CTCTTCCTCATCGAGCTATCCTGCTCGGCGAGGGCTAACCACCTGTATGT
GGTCATAAACGTGGTGGAGAAGGAACTGTGTGCCCATGGAGCTGGTTCTG
ACACCTACAATCCTTGTCCATCGTCTGGCGTTCGGTACTTCAACACAAAT
GTCGTGTTCGATCGAAGGGGCAGGATTGTCTCGCGTTACAGAAAAACCCA
TTTGTGGCGACACGAGTATGTCTCGACATCAGTGCTCCGATCTCCGGATA
TATCCATCTTTAGGACAGACTTTGGCGTAACCTTTGGTCATTTCATCTGC
TTCGACATGTTGTTCTATGATCCGGCGATGAAATTGGTGAAGGAGCACAA
GATCACGGACATCGTGTATCCAACCTATTGGTTCTCGGAATTGCCATTCC
TTGGCGCTGTACAACTCCAAGAGGGTTGGGCATTTGGTAATGATGTTAAT
GTTCTAGCCGCAGATGCCAGTAATCCCGATGGACGCACTTCCGGATCGGG
TATCTATGCAGGACGCGGTGGCCGATTGGTGGCGGAGATTTTCGAGCAGC
CCACCACTAAGTTGCTGATTGCGGAGGTGCCGAAGAGGGAACATGGCCAA
CTGGCACCCACTTTTACGCCGATCTTCGAGCCGCAGAGGAAAACGCAAAG
ATTGACTGGCCTGGCCACGTACCGGGATAATAATGTGGATATATTCGAAA
GTGAATTGTTGGACGATGATTTTCTGAGTTTCGAACGCCAGTTGTGCCAT
GGCAGCTTTTGCTGTACCTTCTCCATCGAACGAAAGGTCACCAGTGCCGC
GGAGAACGAGTTGCCCTCCAGTGGGGCCAAGTCATATCGCTATAGGATCG
GCGTCTACTGGGGCAACGAGACCACCGTCATTGGCGTGGATCGCACGGAG
CAGGCAACTTGTGCACTCTTTGCCTGCACGGATGTGCGTCTCGCGAGTTG
TGGCTACATCTATCCGGAGAACGAGGAGGTCATCAATACGCATCATTTCA
CCAAGCTGAGTATCTCGGGCAATTTTCCAGCTGCTCCACGTGGCCGACGA
TTGATCATGCCCAGCTCCTTGAATGCTCTATTTCTGCCCGTTTCGGTTTC
CGATTATGAATGGATTGAATCACCAGAGGCGGCGAATAATCTAGACAAGA
CAATATTGGTCGATTTGAAACTAGCGAAGGCACAGAACGATCTGCTAACC
TTTGCCATTTGGGCCAACTACTACACCGATATACCCAGCACTCACAACTT
GGATCACATGCAGCCGAATGGAACTCAGTCCAATCCTTCGACTTCCGCAT
CCTCGACAGTTTCGGCATTCTGGATTTTATGTGTCCTCAACTGTTTCATC
AGCGTATTATAG
RT06651.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Btd-RA | 2053 | Btd-RA | 179..1839 | 1..1661 | 8305 | 100 | Plus |
vanin-like-RA | 1931 | vanin-like-RA | 648..701 | 564..617 | 195 | 90.7 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 6109653..6111256 | 1662..59 | 8005 | 99.9 | Minus |
chrX | 22417052 | chrX | 6111408..6111467 | 60..1 | 300 | 100 | Minus |
chrX | 22417052 | chrX | 6094017..6094070 | 617..564 | 210 | 92.6 | Minus |
chrX | 22417052 | chrX | 6090123..6090177 | 618..564 | 200 | 90.9 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:43:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6217480..6219083 | 1662..59 | 8020 | 100 | Minus |
X | 23542271 | X | 6219235..6219294 | 60..1 | 300 | 100 | Minus |
X | 23542271 | X | 6201853..6201906 | 617..564 | 195 | 90.7 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:13:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 6225578..6227181 | 1662..59 | 8020 | 100 | Minus |
X | 23527363 | X | 6227333..6227392 | 60..1 | 300 | 100 | Minus |
X | 23527363 | X | 6209951..6210004 | 617..564 | 195 | 90.7 | Minus |
Blast to na_te.dros performed on 2019-03-15 10:51:13 has no hits.
RT06651.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:51:59 Download gff for
RT06651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 6109653..6111254 | 61..1662 | 99 | <- | Minus |
chrX | 6111408..6111467 | 1..60 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-03-03 13:38:49 Download gff for
RT06651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Btd-RA | 1..1660 | 1..1660 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-07-27 09:25:38 Download gff for
RT06651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Btd-RA | 1..1662 | 1..1662 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:27:09 Download gff for
RT06651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Btd-RA | 1..1662 | 1..1662 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:13:55 Download gff for
RT06651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Btd-RA | 1..1662 | 1..1662 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-03-03 13:38:49 Download gff for
RT06651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Btd-RA | 1..1660 | 1..1660 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-27 09:25:38 Download gff for
RT06651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Btd-RA | 1..1662 | 1..1662 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:27:09 Download gff for
RT06651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Btd-RA | 34..1695 | 1..1662 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:55 Download gff for
RT06651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Btd-RA | 34..1695 | 1..1662 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:59 Download gff for
RT06651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6217480..6219081 | 61..1662 | 100 | <- | Minus |
X | 6219235..6219294 | 1..60 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:59 Download gff for
RT06651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6217480..6219081 | 61..1662 | 100 | <- | Minus |
X | 6219235..6219294 | 1..60 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:59 Download gff for
RT06651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6217480..6219081 | 61..1662 | 100 | <- | Minus |
X | 6219235..6219294 | 1..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:27:09 Download gff for
RT06651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6111513..6113114 | 61..1662 | 100 | <- | Minus |
arm_X | 6113268..6113327 | 1..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:09:58 Download gff for
RT06651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6225578..6227179 | 61..1662 | 100 | <- | Minus |
X | 6227333..6227392 | 1..60 | 100 | | Minus |
RT06651.pep Sequence
Translation from 0 to 1661
> RT06651.pep
MKSIQLSFLLLSVLFSSSHQLSKPEDPTYTAAVVEHSQPVGDSPRARTTS
ASESFQKIIREVGDVDIIVFPEHILNSQATATFVPHESQNITPCYQTDYE
LFLIELSCSARANHLYVVINVVEKELCAHGAGSDTYNPCPSSGVRYFNTN
VVFDRRGRIVSRYRKTHLWRHEYVSTSVLRSPDISIFRTDFGVTFGHFIC
FDMLFYDPAMKLVKEHKITDIVYPTYWFSELPFLGAVQLQEGWAFGNDVN
VLAADASNPDGRTSGSGIYAGRGGRLVAEIFEQPTTKLLIAEVPKREHGQ
LAPTFTPIFEPQRKTQRLTGLATYRDNNVDIFESELLDDDFLSFERQLCH
GSFCCTFSIERKVTSAAENELPSSGAKSYRYRIGVYWGNETTVIGVDRTE
QATCALFACTDVRLASCGYIYPENEEVINTHHFTKLSISGNFPAAPRGRR
LIMPSSLNALFLPVSVSDYEWIESPEAANNLDKTILVDLKLAKAQNDLLT
FAIWANYYTDIPSTHNLDHMQPNGTQSNPSTSASSTVSAFWILCVLNCFI
SVL*
RT06651.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF20306-PA | 560 | GF20306-PA | 1..544 | 1..541 | 1778 | 60.9 | Plus |
Dana\GF20308-PA | 555 | GF20308-PA | 11..510 | 8..510 | 840 | 38.6 | Plus |
Dana\GF20307-PA | 544 | GF20307-PA | 1..503 | 1..510 | 749 | 37.1 | Plus |
Dana\GF20309-PA | 523 | GF20309-PA | 23..485 | 29..510 | 632 | 36.3 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG17689-PA | 563 | GG17689-PA | 1..550 | 1..552 | 2518 | 86.4 | Plus |
Dere\GG17690-PA | 556 | GG17690-PA | 8..512 | 4..510 | 857 | 40.5 | Plus |
Dere\GG17692-PA | 524 | GG17692-PA | 26..499 | 25..513 | 664 | 36.5 | Plus |
Dere\GG17691-PA | 171 | GG17691-PA | 34..87 | 180..234 | 179 | 60 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH24838-PA | 559 | GH24838-PA | 17..551 | 17..546 | 1564 | 54.6 | Plus |
Dgri\GH24839-PA | 575 | GH24839-PA | 41..567 | 26..546 | 743 | 34.6 | Plus |
Dgri\GH24840-PA | 544 | GH24840-PA | 12..497 | 10..510 | 704 | 36.4 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Btnd-PA | 553 | CG3599-PA | 1..553 | 1..553 | 2910 | 100 | Plus |
vanin-like-PA | 558 | CG32754-PA | 8..510 | 4..508 | 830 | 39.6 | Plus |
CG32751-PA | 517 | CG32751-PA | 13..495 | 9..510 | 759 | 37.9 | Plus |
CG32751-PB | 525 | CG32751-PB | 13..503 | 9..510 | 740 | 37.4 | Plus |
CG32750-PA | 523 | CG32750-PA | 25..495 | 25..510 | 619 | 36.9 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:16:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI16170-PA | 543 | GI16170-PA | 28..531 | 29..540 | 1569 | 57 | Plus |
Dmoj\GI16171-PA | 570 | GI16171-PA | 14..523 | 7..511 | 800 | 37.8 | Plus |
Dmoj\GI16172-PA | 566 | GI16172-PA | 9..561 | 5..550 | 796 | 36.2 | Plus |
Dmoj\GI16173-PA | 570 | GI16173-PA | 41..529 | 29..518 | 793 | 37.8 | Plus |
Dmoj\GI16174-PA | 558 | GI16174-PA | 27..514 | 29..510 | 661 | 35.7 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:16:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL21358-PA | 465 | GL21358-PA | 109..425 | 217..535 | 1041 | 60.5 | Plus |
Dper\GL21361-PA | 552 | GL21361-PA | 23..511 | 18..510 | 756 | 37.6 | Plus |
Dper\GL21362-PA | 523 | GL21362-PA | 28..494 | 29..513 | 645 | 35.9 | Plus |
Dper\GL21358-PA | 465 | GL21358-PA | 11..107 | 8..103 | 280 | 57.1 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:16:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA17549-PA | 592 | GA17549-PA | 26..552 | 8..533 | 1829 | 63.2 | Plus |
Dpse\GA17117-PA | 552 | GA17117-PA | 23..511 | 18..510 | 761 | 37.6 | Plus |
Dpse\GA23775-PA | 524 | GA23775-PA | 28..495 | 29..513 | 648 | 35.8 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:16:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM12589-PA | 558 | GM12589-PA | 8..512 | 4..510 | 859 | 39.7 | Plus |
Dsec\GM12588-PA | 336 | GM12588-PA | 123..336 | 345..553 | 848 | 80.8 | Plus |
Dsec\GM12588-PA | 336 | GM12588-PA | 1..145 | 1..145 | 732 | 95.2 | Plus |
Dsec\GM12590-PA | 482 | GM12590-PA | 13..460 | 9..510 | 674 | 35.1 | Plus |
Dsec\GM12591-PA | 523 | GM12591-PA | 25..495 | 25..510 | 632 | 36.9 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:16:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD16205-PA | 553 | GD16205-PA | 1..551 | 1..551 | 2769 | 94 | Plus |
Dsim\GD16207-PA | 558 | GD16207-PA | 8..512 | 4..510 | 866 | 40 | Plus |
Dsim\GD16208-PA | 516 | GD16208-PA | 13..494 | 9..510 | 771 | 37.8 | Plus |
Dsim\GD16209-PA | 523 | GD16209-PA | 1..495 | 1..510 | 646 | 36.8 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ16662-PA | 572 | GJ16662-PA | 6..550 | 6..539 | 1634 | 56.5 | Plus |
Dvir\GJ16663-PA | 591 | GJ16663-PA | 45..543 | 12..510 | 808 | 36.6 | Plus |
Dvir\GJ16664-PA | 540 | GJ16664-PA | 24..500 | 26..510 | 725 | 36.3 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK17695-PA | 556 | GK17695-PA | 7..554 | 20..553 | 1622 | 56.2 | Plus |
Dwil\GK15353-PA | 572 | GK15353-PA | 17..520 | 3..511 | 764 | 36.3 | Plus |
Dwil\GK15373-PA | 592 | GK15373-PA | 7..489 | 10..510 | 665 | 36.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE16477-PA | 553 | GE16477-PA | 1..552 | 1..553 | 2504 | 87 | Plus |
Dyak\GE16478-PA | 556 | GE16478-PA | 8..543 | 4..542 | 858 | 38 | Plus |
Dyak\GE16479-PA | 516 | GE16479-PA | 13..494 | 9..510 | 775 | 38.1 | Plus |
Dyak\GE16480-PA | 525 | GE16480-PA | 25..495 | 25..510 | 655 | 37 | Plus |
RT06651.hyp Sequence
Translation from 1 to 1659
> RT06651.hyp
MKSIQLSFLLLSVLFSSSHQLSKPEDPTYTAAVVEHSQPVGDSPRARTTS
ASESFQKIIREVGDVDIIVFPEHILNSQATATFVPHESQNITPCYQTDYE
LFLIELSCSARANHLYVVINVVEKELCAHGAGSDTYNPCPSSGVRYFNTN
VVFDRRGRIVSRYRKTHLWRHEYVSTSVLRSPDISIFRTDFGVTFGHFIC
FDMLFYDPAMKLVKEHKITDIVYPTYWFSELPFLGAVQLQEGWAFGNDVN
VLAADASNPDGRTSGSGIYAGRGGRLVAEIFEQPTTKLLIAEVPKREHGQ
LAPTFTPIFEPQRKTQRLTGLATYRDNNVDIFESELLDDDFLSFERQLCH
GSFCCTFSIERKVTSAAENELPSSGAKSYRYRIGVYWGNETTVIGVDRTE
QATCALFACTDVRLASCGYIYPENEEVINTHHFTKLSISGNFPAAPRGRR
LIMPSSLNALFLPVSVSDYEWIESPEAANNLDKTILVDLKLAKAQNDLLT
FAIWANYYTDIPSTHNLDHMQPNGTQSNPSTSASSTVSAFWILCVLNCFI
SVL
RT06651.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Btd-PA | 553 | CG3599-PA | 1..553 | 1..553 | 2910 | 100 | Plus |
vanin-like-PA | 558 | CG32754-PA | 8..510 | 4..508 | 830 | 39.6 | Plus |
CG32751-PA | 517 | CG32751-PA | 13..495 | 9..510 | 759 | 37.9 | Plus |
CG32751-PB | 525 | CG32751-PB | 13..503 | 9..510 | 740 | 37.4 | Plus |
CG32750-PA | 523 | CG32750-PA | 25..495 | 25..510 | 619 | 36.9 | Plus |
RT06651.hyp2 Sequence
Translation from 1 to 1661
> RT06651.hyp2
MKSIQLSFLLLSVLFSSSHQLSKPEDPTYTAAVVEHSQPVGDSPRARTTS
ASESFQKIIREVGDVDIIVFPEHILNSQATATFVPHESQNITPCYQTDYE
LFLIELSCSARANHLYVVINVVEKELCAHGAGSDTYNPCPSSGVRYFNTN
VVFDRRGRIVSRYRKTHLWRHEYVSTSVLRSPDISIFRTDFGVTFGHFIC
FDMLFYDPAMKLVKEHKITDIVYPTYWFSELPFLGAVQLQEGWAFGNDVN
VLAADASNPDGRTSGSGIYAGRGGRLVAEIFEQPTTKLLIAEVPKREHGQ
LAPTFTPIFEPQRKTQRLTGLATYRDNNVDIFESELLDDDFLSFERQLCH
GSFCCTFSIERKVTSAAENELPSSGAKSYRYRIGVYWGNETTVIGVDRTE
QATCALFACTDVRLASCGYIYPENEEVINTHHFTKLSISGNFPAAPRGRR
LIMPSSLNALFLPVSVSDYEWIESPEAANNLDKTILVDLKLAKAQNDLLT
FAIWANYYTDIPSTHNLDHMQPNGTQSNPSTSASSTVSAFWILCVLNCFI
SVL*
RT06651.hyp2 Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Btnd-PA | 553 | CG3599-PA | 1..553 | 1..553 | 2910 | 100 | Plus |
vanin-like-PA | 558 | CG32754-PA | 8..510 | 4..508 | 830 | 39.6 | Plus |
CG32751-PA | 517 | CG32751-PA | 13..495 | 9..510 | 759 | 37.9 | Plus |
CG32751-PB | 525 | CG32751-PB | 13..503 | 9..510 | 740 | 37.4 | Plus |
CG32750-PA | 523 | CG32750-PA | 25..495 | 25..510 | 619 | 36.9 | Plus |