Clone RT06651 Report

Search the DGRC for RT06651

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:66
Well:51
Vector:pCR2.1
Associated Gene/TranscriptBtd-RA
Protein status:RT06651.pep: full length peptide match
Sequenced Size:1662

Clone Sequence Records

RT06651.complete Sequence

1662 bp assembled on 2011-07-27

GenBank Submission: BT122052.2

> RT06651.complete
ATGAAGTCGATTCAATTGAGTTTTCTACTCTTGTCAGTGCTCTTCAGCAG
TTCGCATCAGCTTTCCAAGCCGGAAGATCCAACCTATACGGCAGCAGTGG
TGGAGCACAGCCAGCCAGTGGGCGATTCTCCGCGTGCACGCACCACCTCA
GCTTCGGAATCCTTTCAAAAGATCATCCGTGAAGTCGGCGATGTGGACAT
CATAGTGTTTCCCGAGCACATACTCAATAGTCAGGCCACAGCCACTTTTG
TGCCCCATGAGTCGCAGAACATAACGCCCTGCTACCAAACGGACTATGAG
CTCTTCCTCATCGAGCTATCCTGCTCGGCGAGGGCTAACCACCTGTATGT
GGTCATAAACGTGGTGGAGAAGGAACTGTGTGCCCATGGAGCTGGTTCTG
ACACCTACAATCCTTGTCCATCGTCTGGCGTTCGGTACTTCAACACAAAT
GTCGTGTTCGATCGAAGGGGCAGGATTGTCTCGCGTTACAGAAAAACCCA
TTTGTGGCGACACGAGTATGTCTCGACATCAGTGCTCCGATCTCCGGATA
TATCCATCTTTAGGACAGACTTTGGCGTAACCTTTGGTCATTTCATCTGC
TTCGACATGTTGTTCTATGATCCGGCGATGAAATTGGTGAAGGAGCACAA
GATCACGGACATCGTGTATCCAACCTATTGGTTCTCGGAATTGCCATTCC
TTGGCGCTGTACAACTCCAAGAGGGTTGGGCATTTGGTAATGATGTTAAT
GTTCTAGCCGCAGATGCCAGTAATCCCGATGGACGCACTTCCGGATCGGG
TATCTATGCAGGACGCGGTGGCCGATTGGTGGCGGAGATTTTCGAGCAGC
CCACCACTAAGTTGCTGATTGCGGAGGTGCCGAAGAGGGAACATGGCCAA
CTGGCACCCACTTTTACGCCGATCTTCGAGCCGCAGAGGAAAACGCAAAG
ATTGACTGGCCTGGCCACGTACCGGGATAATAATGTGGATATATTCGAAA
GTGAATTGTTGGACGATGATTTTCTGAGTTTCGAACGCCAGTTGTGCCAT
GGCAGCTTTTGCTGTACCTTCTCCATCGAACGAAAGGTCACCAGTGCCGC
GGAGAACGAGTTGCCCTCCAGTGGGGCCAAGTCATATCGCTATAGGATCG
GCGTCTACTGGGGCAACGAGACCACCGTCATTGGCGTGGATCGCACGGAG
CAGGCAACTTGTGCACTCTTTGCCTGCACGGATGTGCGTCTCGCGAGTTG
TGGCTACATCTATCCGGAGAACGAGGAGGTCATCAATACGCATCATTTCA
CCAAGCTGAGTATCTCGGGCAATTTTCCAGCTGCTCCACGTGGCCGACGA
TTGATCATGCCCAGCTCCTTGAATGCTCTATTTCTGCCCGTTTCGGTTTC
CGATTATGAATGGATTGAATCACCAGAGGCGGCGAATAATCTAGACAAGA
CAATATTGGTCGATTTGAAACTAGCGAAGGCACAGAACGATCTGCTAACC
TTTGCCATTTGGGCCAACTACTACACCGATATACCCAGCACTCACAACTT
GGATCACATGCAGCCGAATGGAACTCAGTCCAATCCTTCGACTTCCGCAT
CCTCGACAGTTTCGGCATTCTGGATTTTATGTGTCCTCAACTGTTTCATC
AGCGTATTATAG

RT06651.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
Btd-RA 2053 Btd-RA 179..1839 1..1661 8305 100 Plus
vanin-like-RA 1931 vanin-like-RA 648..701 564..617 195 90.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6109653..6111256 1662..59 8005 99.9 Minus
chrX 22417052 chrX 6111408..6111467 60..1 300 100 Minus
chrX 22417052 chrX 6094017..6094070 617..564 210 92.6 Minus
chrX 22417052 chrX 6090123..6090177 618..564 200 90.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:43:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6217480..6219083 1662..59 8020 100 Minus
X 23542271 X 6219235..6219294 60..1 300 100 Minus
X 23542271 X 6201853..6201906 617..564 195 90.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6225578..6227181 1662..59 8020 100 Minus
X 23527363 X 6227333..6227392 60..1 300 100 Minus
X 23527363 X 6209951..6210004 617..564 195 90.7 Minus
Blast to na_te.dros performed on 2019-03-15 10:51:13 has no hits.

RT06651.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:51:59 Download gff for RT06651.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6109653..6111254 61..1662 99 <- Minus
chrX 6111408..6111467 1..60 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-03-03 13:38:49 Download gff for RT06651.complete
Subject Subject Range Query Range Percent Splice Strand
Btd-RA 1..1660 1..1660 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-07-27 09:25:38 Download gff for RT06651.complete
Subject Subject Range Query Range Percent Splice Strand
Btd-RA 1..1662 1..1662 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:27:09 Download gff for RT06651.complete
Subject Subject Range Query Range Percent Splice Strand
Btd-RA 1..1662 1..1662 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:13:55 Download gff for RT06651.complete
Subject Subject Range Query Range Percent Splice Strand
Btd-RA 1..1662 1..1662 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-03-03 13:38:49 Download gff for RT06651.complete
Subject Subject Range Query Range Percent Splice Strand
Btd-RA 1..1660 1..1660 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-27 09:25:38 Download gff for RT06651.complete
Subject Subject Range Query Range Percent Splice Strand
Btd-RA 1..1662 1..1662 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:27:09 Download gff for RT06651.complete
Subject Subject Range Query Range Percent Splice Strand
Btd-RA 34..1695 1..1662 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:55 Download gff for RT06651.complete
Subject Subject Range Query Range Percent Splice Strand
Btd-RA 34..1695 1..1662 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:59 Download gff for RT06651.complete
Subject Subject Range Query Range Percent Splice Strand
X 6217480..6219081 61..1662 100 <- Minus
X 6219235..6219294 1..60 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:59 Download gff for RT06651.complete
Subject Subject Range Query Range Percent Splice Strand
X 6217480..6219081 61..1662 100 <- Minus
X 6219235..6219294 1..60 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:59 Download gff for RT06651.complete
Subject Subject Range Query Range Percent Splice Strand
X 6217480..6219081 61..1662 100 <- Minus
X 6219235..6219294 1..60 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:27:09 Download gff for RT06651.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6111513..6113114 61..1662 100 <- Minus
arm_X 6113268..6113327 1..60 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:09:58 Download gff for RT06651.complete
Subject Subject Range Query Range Percent Splice Strand
X 6225578..6227179 61..1662 100 <- Minus
X 6227333..6227392 1..60 100   Minus

RT06651.pep Sequence

Translation from 0 to 1661

> RT06651.pep
MKSIQLSFLLLSVLFSSSHQLSKPEDPTYTAAVVEHSQPVGDSPRARTTS
ASESFQKIIREVGDVDIIVFPEHILNSQATATFVPHESQNITPCYQTDYE
LFLIELSCSARANHLYVVINVVEKELCAHGAGSDTYNPCPSSGVRYFNTN
VVFDRRGRIVSRYRKTHLWRHEYVSTSVLRSPDISIFRTDFGVTFGHFIC
FDMLFYDPAMKLVKEHKITDIVYPTYWFSELPFLGAVQLQEGWAFGNDVN
VLAADASNPDGRTSGSGIYAGRGGRLVAEIFEQPTTKLLIAEVPKREHGQ
LAPTFTPIFEPQRKTQRLTGLATYRDNNVDIFESELLDDDFLSFERQLCH
GSFCCTFSIERKVTSAAENELPSSGAKSYRYRIGVYWGNETTVIGVDRTE
QATCALFACTDVRLASCGYIYPENEEVINTHHFTKLSISGNFPAAPRGRR
LIMPSSLNALFLPVSVSDYEWIESPEAANNLDKTILVDLKLAKAQNDLLT
FAIWANYYTDIPSTHNLDHMQPNGTQSNPSTSASSTVSAFWILCVLNCFI
SVL*

RT06651.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20306-PA 560 GF20306-PA 1..544 1..541 1778 60.9 Plus
Dana\GF20308-PA 555 GF20308-PA 11..510 8..510 840 38.6 Plus
Dana\GF20307-PA 544 GF20307-PA 1..503 1..510 749 37.1 Plus
Dana\GF20309-PA 523 GF20309-PA 23..485 29..510 632 36.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17689-PA 563 GG17689-PA 1..550 1..552 2518 86.4 Plus
Dere\GG17690-PA 556 GG17690-PA 8..512 4..510 857 40.5 Plus
Dere\GG17692-PA 524 GG17692-PA 26..499 25..513 664 36.5 Plus
Dere\GG17691-PA 171 GG17691-PA 34..87 180..234 179 60 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24838-PA 559 GH24838-PA 17..551 17..546 1564 54.6 Plus
Dgri\GH24839-PA 575 GH24839-PA 41..567 26..546 743 34.6 Plus
Dgri\GH24840-PA 544 GH24840-PA 12..497 10..510 704 36.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
Btnd-PA 553 CG3599-PA 1..553 1..553 2910 100 Plus
vanin-like-PA 558 CG32754-PA 8..510 4..508 830 39.6 Plus
CG32751-PA 517 CG32751-PA 13..495 9..510 759 37.9 Plus
CG32751-PB 525 CG32751-PB 13..503 9..510 740 37.4 Plus
CG32750-PA 523 CG32750-PA 25..495 25..510 619 36.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16170-PA 543 GI16170-PA 28..531 29..540 1569 57 Plus
Dmoj\GI16171-PA 570 GI16171-PA 14..523 7..511 800 37.8 Plus
Dmoj\GI16172-PA 566 GI16172-PA 9..561 5..550 796 36.2 Plus
Dmoj\GI16173-PA 570 GI16173-PA 41..529 29..518 793 37.8 Plus
Dmoj\GI16174-PA 558 GI16174-PA 27..514 29..510 661 35.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21358-PA 465 GL21358-PA 109..425 217..535 1041 60.5 Plus
Dper\GL21361-PA 552 GL21361-PA 23..511 18..510 756 37.6 Plus
Dper\GL21362-PA 523 GL21362-PA 28..494 29..513 645 35.9 Plus
Dper\GL21358-PA 465 GL21358-PA 11..107 8..103 280 57.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17549-PA 592 GA17549-PA 26..552 8..533 1829 63.2 Plus
Dpse\GA17117-PA 552 GA17117-PA 23..511 18..510 761 37.6 Plus
Dpse\GA23775-PA 524 GA23775-PA 28..495 29..513 648 35.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12589-PA 558 GM12589-PA 8..512 4..510 859 39.7 Plus
Dsec\GM12588-PA 336 GM12588-PA 123..336 345..553 848 80.8 Plus
Dsec\GM12588-PA 336 GM12588-PA 1..145 1..145 732 95.2 Plus
Dsec\GM12590-PA 482 GM12590-PA 13..460 9..510 674 35.1 Plus
Dsec\GM12591-PA 523 GM12591-PA 25..495 25..510 632 36.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16205-PA 553 GD16205-PA 1..551 1..551 2769 94 Plus
Dsim\GD16207-PA 558 GD16207-PA 8..512 4..510 866 40 Plus
Dsim\GD16208-PA 516 GD16208-PA 13..494 9..510 771 37.8 Plus
Dsim\GD16209-PA 523 GD16209-PA 1..495 1..510 646 36.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16662-PA 572 GJ16662-PA 6..550 6..539 1634 56.5 Plus
Dvir\GJ16663-PA 591 GJ16663-PA 45..543 12..510 808 36.6 Plus
Dvir\GJ16664-PA 540 GJ16664-PA 24..500 26..510 725 36.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17695-PA 556 GK17695-PA 7..554 20..553 1622 56.2 Plus
Dwil\GK15353-PA 572 GK15353-PA 17..520 3..511 764 36.3 Plus
Dwil\GK15373-PA 592 GK15373-PA 7..489 10..510 665 36.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16477-PA 553 GE16477-PA 1..552 1..553 2504 87 Plus
Dyak\GE16478-PA 556 GE16478-PA 8..543 4..542 858 38 Plus
Dyak\GE16479-PA 516 GE16479-PA 13..494 9..510 775 38.1 Plus
Dyak\GE16480-PA 525 GE16480-PA 25..495 25..510 655 37 Plus

RT06651.hyp Sequence

Translation from 1 to 1659

> RT06651.hyp
MKSIQLSFLLLSVLFSSSHQLSKPEDPTYTAAVVEHSQPVGDSPRARTTS
ASESFQKIIREVGDVDIIVFPEHILNSQATATFVPHESQNITPCYQTDYE
LFLIELSCSARANHLYVVINVVEKELCAHGAGSDTYNPCPSSGVRYFNTN
VVFDRRGRIVSRYRKTHLWRHEYVSTSVLRSPDISIFRTDFGVTFGHFIC
FDMLFYDPAMKLVKEHKITDIVYPTYWFSELPFLGAVQLQEGWAFGNDVN
VLAADASNPDGRTSGSGIYAGRGGRLVAEIFEQPTTKLLIAEVPKREHGQ
LAPTFTPIFEPQRKTQRLTGLATYRDNNVDIFESELLDDDFLSFERQLCH
GSFCCTFSIERKVTSAAENELPSSGAKSYRYRIGVYWGNETTVIGVDRTE
QATCALFACTDVRLASCGYIYPENEEVINTHHFTKLSISGNFPAAPRGRR
LIMPSSLNALFLPVSVSDYEWIESPEAANNLDKTILVDLKLAKAQNDLLT
FAIWANYYTDIPSTHNLDHMQPNGTQSNPSTSASSTVSAFWILCVLNCFI
SVL

RT06651.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
Btd-PA 553 CG3599-PA 1..553 1..553 2910 100 Plus
vanin-like-PA 558 CG32754-PA 8..510 4..508 830 39.6 Plus
CG32751-PA 517 CG32751-PA 13..495 9..510 759 37.9 Plus
CG32751-PB 525 CG32751-PB 13..503 9..510 740 37.4 Plus
CG32750-PA 523 CG32750-PA 25..495 25..510 619 36.9 Plus

RT06651.hyp2 Sequence

Translation from 1 to 1661

> RT06651.hyp2
MKSIQLSFLLLSVLFSSSHQLSKPEDPTYTAAVVEHSQPVGDSPRARTTS
ASESFQKIIREVGDVDIIVFPEHILNSQATATFVPHESQNITPCYQTDYE
LFLIELSCSARANHLYVVINVVEKELCAHGAGSDTYNPCPSSGVRYFNTN
VVFDRRGRIVSRYRKTHLWRHEYVSTSVLRSPDISIFRTDFGVTFGHFIC
FDMLFYDPAMKLVKEHKITDIVYPTYWFSELPFLGAVQLQEGWAFGNDVN
VLAADASNPDGRTSGSGIYAGRGGRLVAEIFEQPTTKLLIAEVPKREHGQ
LAPTFTPIFEPQRKTQRLTGLATYRDNNVDIFESELLDDDFLSFERQLCH
GSFCCTFSIERKVTSAAENELPSSGAKSYRYRIGVYWGNETTVIGVDRTE
QATCALFACTDVRLASCGYIYPENEEVINTHHFTKLSISGNFPAAPRGRR
LIMPSSLNALFLPVSVSDYEWIESPEAANNLDKTILVDLKLAKAQNDLLT
FAIWANYYTDIPSTHNLDHMQPNGTQSNPSTSASSTVSAFWILCVLNCFI
SVL*

RT06651.hyp2 Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
Btnd-PA 553 CG3599-PA 1..553 1..553 2910 100 Plus
vanin-like-PA 558 CG32754-PA 8..510 4..508 830 39.6 Plus
CG32751-PA 517 CG32751-PA 13..495 9..510 759 37.9 Plus
CG32751-PB 525 CG32751-PB 13..503 9..510 740 37.4 Plus
CG32750-PA 523 CG32750-PA 25..495 25..510 619 36.9 Plus