Clone RT06756 Report

Search the DGRC for RT06756

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:67
Well:56
Vector:pCR2.1
Associated Gene/TranscriptGr2a-RB
Protein status:RT06756.pep: gold
Sequenced Size:1233

Clone Sequence Records

RT06756.complete Sequence

1233 bp assembled on 2011-07-27

GenBank Submission: BT122077.2

> RT06756.complete
ATGGACACGCTGAGAGCTCTGGAGCCGCTGCACCGCGCCTGCCAGGTGTG
CAACCTATGGCCCTGGCGCCTCGCCCCCCCGCCAGACTCGGAGGGCATCC
TGCTCCGGCGATCGCGCTGGCTGGAGCTGTACGGTTGGACCGTGCTGATA
GCGGCCACCTCCTTCACCGTGTACGGCCTCTTCCAGGAGAGCAGCGTAGA
AGAGAAACAGGACTCGGAGTCCACCATCTCGAGCATAGGTCACACGGTTG
ACTTCATTCAGCTGGTGGGCATGCGGGTGGCTCATCTGGCTGCCCTGCTG
GAGGCCCTGTGGCAGCGGCAGGCGCAGCGAGGCTTCTTTGCGGAGCTAGG
CGAGATCGATCGCCTGCTGTCCAAGGCGTTGAGGGTGGATGTGGAGGCTA
TGCGCATCAATATGCGTCGCCAGACGTCGCGCCGAGCTGTGTGGATCCTG
TGGGGCTATGCGGTTAGCCAACTCCTTATCCTGGGCGCCAAGCTGCTCTC
CCGCGGAGACAGATTCCCGATCTACTGGATCAGCTACTTGCTGCCACTGC
TTGTGTGCGGATTGCGTTACTTTCAGATCTTCAACGCCACTCAGCTCGTG
CGCCAGCGCCTGGATGTGCTCCTAGTGGCCTTGCAGCAGCTTCAGCTGCA
CCAGAAAGGGCCCGCAGTGGATACTGTGCTTGAGGAGCAGGAGGATCTGG
AAGAAGCAGCAATGGATAGACTGATCGCTGTCAGACTCGTCTACCAACGG
GTGTGGGCCCTAGTGGCCTTGCTAAACCGCTGCTACGGGCTCTCCATGTT
GATGCAGGTGGGCAACGACTTCCTGGCTATCACCTCCAACTGCTACTGGA
TGTTCCTCAACTTCCGCCAGTCGGCGGCCTCGCCCTTCGACATCCTGCAA
ATCGTGGCCAGTGGCGTATGGTCTGCCCCCCACTTGGGTAACGTGCTCGT
CCTCTCACTGCTTTGCGACCGAACGGCCCAGTGCGCGTCTCGTCTTGCCC
TGTGCCTGCACCAGGTAAGCGTGGATTTAAGGAATGAGAGCCACAATGCT
CTGATAACCCAGTTCTCGCTGCAGCTACTCCACCAGCGGCTCCACTTCAG
CGCCGCTGGCTTCTTCAACGTGGACTGCACCCTTCTCTATACGATCGTGG
GAGCCACTACCACGTACTTGATAATCCTGATTCAGTTTCACATGAGCGAA
TCCACCATCGGCAGTGATTCCAACGGACAGTAG

RT06756.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
Gr2a.a 1508 Gr2a.a 203..1434 1..1232 6160 100 Plus
Gr2a.b 1557 Gr2a.b 203..1255 1..1053 5265 100 Plus
Gr2a-RC 1287 Gr2a-RC 1..1053 1..1053 5265 100 Plus
Gr2a.b 1557 Gr2a.b 1309..1488 1053..1232 900 100 Plus
Gr2a-RC 1287 Gr2a-RC 1107..1286 1053..1232 900 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1346621..1347605 1..985 4895 99.8 Plus
chrX 22417052 chrX 1347794..1347884 1053..1143 455 100 Plus
chrX 22417052 chrX 1347933..1348023 1143..1233 455 100 Plus
chrX 22417052 chrX 1347671..1347739 985..1053 330 98.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:43:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1452703..1453687 1..985 4925 100 Plus
X 23542271 X 1453875..1453965 1053..1143 455 100 Plus
X 23542271 X 1454014..1454104 1143..1233 455 100 Plus
X 23542271 X 1453753..1453821 985..1053 345 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1460801..1461785 1..985 4925 100 Plus
X 23527363 X 1462112..1462202 1143..1233 455 100 Plus
X 23527363 X 1461973..1462063 1053..1143 455 100 Plus
X 23527363 X 1461851..1461919 985..1053 345 100 Plus
Blast to na_te.dros performed on 2019-03-15 10:51:15 has no hits.

RT06756.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:52:00 Download gff for RT06756.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1347671..1347739 985..1053 98 -> Plus
chrX 1347795..1347884 1054..1143 100 -> Plus
chrX 1347934..1348023 1144..1233 100   Plus
chrX 1346621..1347604 1..984 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-03-18 17:35:06 Download gff for RT06756.complete
Subject Subject Range Query Range Percent Splice Strand
Gr2a-RB 1..1231 1..1231 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-07-27 09:25:39 Download gff for RT06756.complete
Subject Subject Range Query Range Percent Splice Strand
Gr2a-RB 1..1233 1..1233 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:27:13 Download gff for RT06756.complete
Subject Subject Range Query Range Percent Splice Strand
Gr2a-RB 1..1233 1..1233 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:13:59 Download gff for RT06756.complete
Subject Subject Range Query Range Percent Splice Strand
Gr2a-RB 1..1233 1..1233 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-03-18 17:35:06 Download gff for RT06756.complete
Subject Subject Range Query Range Percent Splice Strand
Gr2a-RB 1..1231 1..1231 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-27 09:25:38 Download gff for RT06756.complete
Subject Subject Range Query Range Percent Splice Strand
Gr2a-RB 1..1233 1..1233 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:27:13 Download gff for RT06756.complete
Subject Subject Range Query Range Percent Splice Strand
Gr2a-RB 203..1435 1..1233 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:59 Download gff for RT06756.complete
Subject Subject Range Query Range Percent Splice Strand
Gr2a-RB 203..1435 1..1233 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:52:00 Download gff for RT06756.complete
Subject Subject Range Query Range Percent Splice Strand
X 1452703..1453686 1..984 100 -> Plus
X 1453753..1453821 985..1053 100 -> Plus
X 1453876..1453965 1054..1143 100 -> Plus
X 1454015..1454104 1144..1233 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:52:00 Download gff for RT06756.complete
Subject Subject Range Query Range Percent Splice Strand
X 1452703..1453686 1..984 100 -> Plus
X 1453753..1453821 985..1053 100 -> Plus
X 1453876..1453965 1054..1143 100 -> Plus
X 1454015..1454104 1144..1233 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:52:00 Download gff for RT06756.complete
Subject Subject Range Query Range Percent Splice Strand
X 1452703..1453686 1..984 100 -> Plus
X 1453753..1453821 985..1053 100 -> Plus
X 1453876..1453965 1054..1143 100 -> Plus
X 1454015..1454104 1144..1233 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:27:13 Download gff for RT06756.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1346736..1347719 1..984 100 -> Plus
arm_X 1347786..1347854 985..1053 100 -> Plus
arm_X 1347909..1347998 1054..1143 100 -> Plus
arm_X 1348048..1348137 1144..1233 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:10:00 Download gff for RT06756.complete
Subject Subject Range Query Range Percent Splice Strand
X 1460801..1461784 1..984 100 -> Plus
X 1461851..1461919 985..1053 100 -> Plus
X 1461974..1462063 1054..1143 100 -> Plus
X 1462113..1462202 1144..1233 100   Plus

RT06756.pep Sequence

Translation from 0 to 1232

> RT06756.pep
MDTLRALEPLHRACQVCNLWPWRLAPPPDSEGILLRRSRWLELYGWTVLI
AATSFTVYGLFQESSVEEKQDSESTISSIGHTVDFIQLVGMRVAHLAALL
EALWQRQAQRGFFAELGEIDRLLSKALRVDVEAMRINMRRQTSRRAVWIL
WGYAVSQLLILGAKLLSRGDRFPIYWISYLLPLLVCGLRYFQIFNATQLV
RQRLDVLLVALQQLQLHQKGPAVDTVLEEQEDLEEAAMDRLIAVRLVYQR
VWALVALLNRCYGLSMLMQVGNDFLAITSNCYWMFLNFRQSAASPFDILQ
IVASGVWSAPHLGNVLVLSLLCDRTAQCASRLALCLHQVSVDLRNESHNA
LITQFSLQLLHQRLHFSAAGFFNVDCTLLYTIVGATTTYLIILIQFHMSE
STIGSDSNGQ*

RT06756.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21017-PA 406 GF21017-PA 1..398 1..402 1467 72.1 Plus
Dana\GF15642-PA 457 GF15642-PA 161..452 121..407 179 25.6 Plus
Dana\GF14022-PA 666 GF14022-PA 566..647 323..409 153 39.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12856-PA 410 GG12856-PA 5..409 1..405 1971 94.6 Plus
Dere\GG23707-PA 461 GG23707-PA 287..455 233..406 173 28.2 Plus
Dere\GG15094-PA 527 GG15094-PA 299..481 221..399 164 27.5 Plus
Dere\GG24874-PA 610 GG24874-PA 433..604 228..402 163 25.3 Plus
Dere\GG23530-PA 443 GG23530-PA 374..424 354..409 153 57.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24883-PA 416 GH24883-PA 1..416 1..409 1230 59.1 Plus
Dgri\GH15380-PA 533 GH15380-PA 299..485 217..399 163 26.3 Plus
Dgri\GH10568-PA 452 GH10568-PA 383..436 354..410 155 54.4 Plus
Dgri\GH13142-PA 462 GH13142-PA 393..435 354..396 152 65.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
Gr2a-PB 410 CG18531-PB 1..410 1..410 2104 100 Plus
Gr2a-PC 428 CG18531-PC 1..428 1..410 2075 95.8 Plus
Gr23a-PC 370 CG15396-PC 62..369 76..405 188 25.4 Plus
Gr32a-PA 461 CG14916-PA 287..451 233..402 176 28.2 Plus
Gr28b-PD 440 CG13788-PD 81..421 73..409 172 24.9 Plus
Gr66a-PB 527 CG7189-PB 299..481 221..399 172 28.6 Plus
Gr28b-PE 447 CG13788-PE 86..428 76..409 166 23.5 Plus
Gr28b-PC 470 CG13788-PC 144..451 119..409 163 23.5 Plus
Gr23a-PB 374 CG15396-PB 162..373 177..405 162 26.7 Plus
Gr28b-PB 443 CG13788-PB 264..424 247..409 159 28.6 Plus
Gr28b-PA 452 CG13788-PA 273..433 247..409 159 28.6 Plus
Gr68a-PA 389 CG7303-PA 56..381 45..402 158 23 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15700-PA 410 GI15700-PA 1..409 1..409 1186 58.3 Plus
Dmoj\GI12983-PA 533 GI12983-PA 297..486 212..399 165 25 Plus
Dmoj\GI17872-PA 687 GI17872-PA 518..679 238..402 163 29.1 Plus
Dmoj\GI17781-PA 665 GI17781-PA 486..652 247..406 155 28.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14254-PA 400 GL14254-PA 1..399 1..409 1431 70.7 Plus
Dper\GL26574-PA 619 GL26574-PA 370..619 160..408 198 29.1 Plus
Dper\GL19543-PA 449 GL19543-PA 149..442 118..407 178 26.1 Plus
Dper\GL25929-PA 665 GL25929-PA 565..649 323..410 156 39.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Gr2a-PA 336 GA14976-PA 188..335 262..409 652 84.5 Plus
Dpse\Gr2a-PA 336 GA14976-PA 1..188 1..190 615 66 Plus
Dpse\Gr23a-PA 619 GA13700-PA 440..619 230..408 190 27.4 Plus
Dpse\Gr32a-PA 449 GA13351-PA 149..442 118..407 178 26.1 Plus
Dpse\Gr28b-PA 665 GA12528-PA 565..649 323..410 156 39.8 Plus
Dpse\Gr66a-PA 528 GA20169-PA 327..481 247..399 154 27.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19140-PA 410 GM19140-PA 1..410 1..410 1980 95.1 Plus
Dsec\GM18907-PA 461 GM18907-PA 157..455 121..406 176 25.2 Plus
Dsec\GM24952-PA 491 GM24952-PA 263..445 221..399 172 27.5 Plus
Dsec\GM18356-PA 380 GM18356-PA 203..374 228..402 165 25.3 Plus
Dsec\GM13551-PA 443 GM13551-PA 374..424 354..409 153 57.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16560-PA 310 GD16560-PA 42..310 142..410 1362 97.4 Plus
Dsim\GD23763-PA 461 GD23763-PA 157..455 121..406 176 25.2 Plus
Dsim\GD23171-PA 370 GD23171-PA 62..364 76..402 175 24.6 Plus
Dsim\GD13002-PA 515 GD13002-PA 287..469 221..399 172 27.5 Plus
Dsim\GD14327-PA 394 GD14327-PA 237..385 258..406 152 29.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15231-PA 408 GJ15231-PA 1..407 1..409 1223 61.4 Plus
Dvir\GJ13127-PA 531 GJ13127-PA 297..483 217..399 165 25.9 Plus
Dvir\GJ17606-PA 665 GJ17606-PA 486..650 247..409 155 28.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16279-PA 418 GK16279-PA 1..412 1..406 1237 60.3 Plus
Dwil\GK18365-PA 457 GK18365-PA 86..449 22..406 194 25 Plus
Dwil\GK24571-PA 372 GK24571-PA 207..372 240..408 178 28.9 Plus
Dwil\GK16999-PA 539 GK16999-PA 282..489 195..399 157 26 Plus
Dwil\GK18679-PA 374 GK18679-PA 209..371 236..396 154 28.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14583-PA 173 GE14583-PA 1..173 238..410 882 96.5 Plus
Dyak\GE18514-PA 457 GE18514-PA 287..455 233..406 181 28.7 Plus
Dyak\GE21317-PA 527 GE21317-PA 299..481 221..399 166 28 Plus
Dyak\GE18171-PA 377 GE18171-PA 220..376 248..408 153 26.8 Plus
Dyak\GE18356-PA 666 GE18356-PA 597..647 354..409 153 57.1 Plus

RT06756.hyp Sequence

Translation from 1 to 1230

> RT06756.hyp
MDTLRALEPLHRACQVCNLWPWRLAPPPDSEGILLRRSRWLELYGWTVLI
AATSFTVYGLFQESSVEEKQDSESTISSIGHTVDFIQLVGMRVAHLAALL
EALWQRQAQRGFFAELGEIDRLLSKALRVDVEAMRINMRRQTSRRAVWIL
WGYAVSQLLILGAKLLSRGDRFPIYWISYLLPLLVCGLRYFQIFNATQLV
RQRLDVLLVALQQLQLHQKGPAVDTVLEEQEDLEEAAMDRLIAVRLVYQR
VWALVALLNRCYGLSMLMQVGNDFLAITSNCYWMFLNFRQSAASPFDILQ
IVASGVWSAPHLGNVLVLSLLCDRTAQCASRLALCLHQVSVDLRNESHNA
LITQFSLQLLHQRLHFSAAGFFNVDCTLLYTIVGATTTYLIILIQFHMSE
STIGSDSNGQ

RT06756.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
Gr2a-PB 410 CG18531-PB 1..410 1..410 2104 100 Plus
Gr2a-PC 428 CG18531-PC 1..428 1..410 2075 95.8 Plus
Gr23a-PC 370 CG15396-PC 62..369 76..405 188 25.4 Plus
Gr32a-PA 461 CG14916-PA 287..451 233..402 176 28.2 Plus
Gr28b-PD 440 CG13788-PD 81..421 73..409 172 24.9 Plus

RT06756.hyp2 Sequence

Translation from 1 to 1232

> RT06756.hyp2
MDTLRALEPLHRACQVCNLWPWRLAPPPDSEGILLRRSRWLELYGWTVLI
AATSFTVYGLFQESSVEEKQDSESTISSIGHTVDFIQLVGMRVAHLAALL
EALWQRQAQRGFFAELGEIDRLLSKALRVDVEAMRINMRRQTSRRAVWIL
WGYAVSQLLILGAKLLSRGDRFPIYWISYLLPLLVCGLRYFQIFNATQLV
RQRLDVLLVALQQLQLHQKGPAVDTVLEEQEDLEEAAMDRLIAVRLVYQR
VWALVALLNRCYGLSMLMQVGNDFLAITSNCYWMFLNFRQSAASPFDILQ
IVASGVWSAPHLGNVLVLSLLCDRTAQCASRLALCLHQVSVDLRNESHNA
LITQFSLQLLHQRLHFSAAGFFNVDCTLLYTIVGATTTYLIILIQFHMSE
STIGSDSNGQ*

RT06756.hyp2 Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
Gr2a-PB 410 CG18531-PB 1..410 1..410 2104 100 Plus
Gr2a-PC 428 CG18531-PC 1..428 1..410 2075 95.8 Plus
Gr23a-PC 370 CG15396-PC 62..369 76..405 188 25.4 Plus
Gr32a-PA 461 CG14916-PA 287..451 233..402 176 28.2 Plus
Gr28b-PD 440 CG13788-PD 81..421 73..409 172 24.9 Plus
Gr66a-PB 527 CG7189-PB 299..481 221..399 172 28.6 Plus
Gr28b-PE 447 CG13788-PE 86..428 76..409 166 23.5 Plus
Gr28b-PC 470 CG13788-PC 144..451 119..409 163 23.5 Plus
Gr23a-PB 374 CG15396-PB 162..373 177..405 162 26.7 Plus
Gr28b-PB 443 CG13788-PB 264..424 247..409 159 28.6 Plus
Gr28b-PA 452 CG13788-PA 273..433 247..409 159 28.6 Plus
Gr68a-PA 389 CG7303-PA 56..381 45..402 158 23 Plus