Clone RT06769 Report

Search the DGRC for RT06769

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:67
Well:69
Vector:pCR2.1
Associated Gene/Transcriptppk28-RA
Protein status:RT06769.pep: gold
Sequenced Size:1821

Clone Sequence Records

RT06769.complete Sequence

1821 bp assembled on 2010-03-18

GenBank Submission: BT122074.1

> RT06769.complete
ATGAGGACGTTGACGGAAAGCAGGCGGCGCCAAAGTGGCTCCTCCGGGTG
CAAAAAGGACTCCGAGTCGGATGACGATGAGAATACCATCTGTAGCAGGG
CGGCCATTAAGAGGAGTGTGGTCTACTATCTCAAGAACAGCACCCTCCAT
GGATTAAAGTACATCGCCGAAGAGAGCATCACCATTCCGGAACGCATCTT
TTTTGGTCTTGCCTTTGTGCTGGTGGTGATCCTTTCCGTGTTCTTCATAT
CCAACGTGTACGTAAAGTGGAGTGCTTCGCCCATAATCATTTCGACCAGT
GCCAAGCAAAAGCTGACCAGCAACATGCCATTTCCGGCGATCACGATCTG
TAATCTCAACCAGGCGCTGCTAAGCAAAGTGGATCGCATTGGACGGACCA
GCACGAATTTCTCGCTGCTGATGGGTCTGTGTGACCAGGGCGGGGACACG
ACCATCTCGTACATCGGCACCTGGAAGTACTTCAAGGCGATCCTGGTGGA
CGTGGCCCAGCCGTGCGAGAAAATGCTCCTGTACTGCAGCTTCGGATCGC
GCGAGGAGGACTGCTCCTGGCTCTTCACCTCCATACTGACGGACGATGGG
CTGTGCTGCAACTTCAATGCCCTGCATCCGTCGTATCTTATACGGAACTA
CAGTGACGATGTGCGGCTGGAGACGGCTCATCCGAATACCCGTTATGAGC
TCATCGATTGGACACCAGAGAAGGGTTATGCCCGCAATTTGCCGGAGTTC
TACTTTCCGCGCACCTCGGGGGGCACGGGCATCCGCATGGGTCTCACCGT
CGTGCTGAACGCCTCCATAGCGGAGTATTACTGCACCAAGTCGATGAGTG
TTGGTTTCAAGGTTCTTGTGCACAATCCCGCCGAGCTGCCAAAAGTGAGC
AACTATGGCTTCGTTGTGACCGCGGGACGCGAGGCACGGATACCCATCGA
ACCAGTCTATGAGGATGCCCTGCCCACGATACGGTCAATTAAGAAATCGG
TGCGTCGCTGCCTCTTCTCCGATGAGAATGACCTGGCCTACTATCGGACA
TATTCGCGTAAGAACTGCGAGCTGGAATGCGAGGCGAAGTTGCTGCTACG
CGAGTGCAGCTGTGTGCTGTACTATCTGCCCCGGATCGATCCGTTGGCCA
GGGTGTGCGGACCCAACGATAATCAGTGCACGGATCGGGTGCAAACCGAG
ATTGAGTCATCGCTGACGAATCTGTCCTGCGAGAACTGCTGGCCGGGTTG
CTTCGAGCTAACATACAGGGCCACACTTTCAACGGCTTCGATCGTTTCGG
ATCCACGATTTCAGGCCGGCGAGAATCTACCCGAATATATCTTCCACGGG
CCATATAGCAATGCCAGCGAGATTTCGATATTGCACTTCTACTACATGAC
CAACATATTTCGCAGCACCACCAAGTCCGAGATGTTTGGCTTTACCGAAT
TCTTGTCTAATACGGGCGGCCTTTTGGGACTTTTCATGGGCTTCAGCATT
TTTTCGGTGATCGAGATCTTCTTCTACATCACCGTCCGTCCGTACTGCGC
CTCGCGAACACTCCGGCAGCGCCACAAACGCCGCCTGGAGCAGCTGAGCT
GGCTGACGCCGATCAGGATGCCCGTGCGCAGAGCACTGCGTCGCAATCGA
GGTGGTCTCCTCCGGAATCCGCCGCCGCCGGCGTACAGTGATCTGCAAAA
GTTCCGCGGGAAACTGGACAAGCCGGAGACATGCAAGCGGAAACTTTGGC
GGACGCTGCAAGTGCGGCCAGTAGTGGATCGGGCGGATGAGGAACTGCCC
ACCTATCCCTACCTGGACTAA

RT06769.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
ppk28.b 2350 ppk28.b 311..2131 1..1821 9105 100 Plus
ppk28-RA 2090 ppk28-RA 51..1871 1..1821 9105 100 Plus
ppk28.a 1899 ppk28.a 272..1899 194..1821 8140 100 Plus
ppk28.a 1899 ppk28.a 1..194 1..194 970 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16696284..16696953 194..863 3320 99.7 Plus
chrX 22417052 chrX 16697007..16697612 855..1460 3000 99.7 Plus
chrX 22417052 chrX 16697672..16698034 1457..1819 1755 98.9 Plus
chrX 22417052 chrX 16695958..16696151 1..194 970 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:43:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16806633..16807302 194..863 3350 100 Plus
X 23542271 X 16807356..16807961 855..1460 3000 99.7 Plus
X 23542271 X 16808021..16808385 1457..1821 1825 100 Plus
X 23542271 X 16806307..16806500 1..194 970 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16814731..16815400 194..863 3350 100 Plus
X 23527363 X 16815454..16816059 855..1460 3000 99.6 Plus
X 23527363 X 16816119..16816483 1457..1821 1825 100 Plus
X 23527363 X 16814405..16814598 1..194 970 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:41:37 has no hits.

RT06769.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:42:30 Download gff for RT06769.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16695958..16696151 1..194 100 -> Plus
chrX 16696285..16696951 195..861 99 -> Plus
chrX 16697014..16697608 862..1456 100 -> Plus
chrX 16697672..16698036 1457..1821 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-03-22 14:11:31 Download gff for RT06769.complete
Subject Subject Range Query Range Percent Splice Strand
ppk28-RA 1..1819 1..1819 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-17 17:09:01 Download gff for RT06769.complete
Subject Subject Range Query Range Percent Splice Strand
ppk28-RA 1..1821 1..1821 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:16:05 Download gff for RT06769.complete
Subject Subject Range Query Range Percent Splice Strand
ppk28-RA 1..1821 1..1821 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:52 Download gff for RT06769.complete
Subject Subject Range Query Range Percent Splice Strand
ppk28-RA 1..1821 1..1821 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-03-22 14:11:29 Download gff for RT06769.complete
Subject Subject Range Query Range Percent Splice Strand
ppk28-RA 1..1819 1..1819 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-17 17:09:01 Download gff for RT06769.complete
Subject Subject Range Query Range Percent Splice Strand
ppk28-RA 1..1821 1..1821 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:16:05 Download gff for RT06769.complete
Subject Subject Range Query Range Percent Splice Strand
ppk28-RA 240..2060 1..1821 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:52 Download gff for RT06769.complete
Subject Subject Range Query Range Percent Splice Strand
ppk28-RA 240..2060 1..1821 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:30 Download gff for RT06769.complete
Subject Subject Range Query Range Percent Splice Strand
X 16806307..16806500 1..194 100 -> Plus
X 16806634..16807300 195..861 100 -> Plus
X 16807363..16807957 862..1456 100 -> Plus
X 16808021..16808385 1457..1821 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:30 Download gff for RT06769.complete
Subject Subject Range Query Range Percent Splice Strand
X 16806307..16806500 1..194 100 -> Plus
X 16806634..16807300 195..861 100 -> Plus
X 16807363..16807957 862..1456 100 -> Plus
X 16808021..16808385 1457..1821 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:42:30 Download gff for RT06769.complete
Subject Subject Range Query Range Percent Splice Strand
X 16806307..16806500 1..194 100 -> Plus
X 16806634..16807300 195..861 100 -> Plus
X 16807363..16807957 862..1456 100 -> Plus
X 16808021..16808385 1457..1821 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:16:05 Download gff for RT06769.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16700340..16700533 1..194 100 -> Plus
arm_X 16700667..16701333 195..861 100 -> Plus
arm_X 16701396..16701990 862..1456 100 -> Plus
arm_X 16702054..16702418 1457..1821 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:33:04 Download gff for RT06769.complete
Subject Subject Range Query Range Percent Splice Strand
X 16814732..16815398 195..861 100 -> Plus
X 16815461..16816055 862..1456 100 -> Plus
X 16816119..16816483 1457..1821 100   Plus
X 16814405..16814598 1..194 100 -> Plus

RT06769.pep Sequence

Translation from 0 to 1820

> RT06769.pep
MRTLTESRRRQSGSSGCKKDSESDDDENTICSRAAIKRSVVYYLKNSTLH
GLKYIAEESITIPERIFFGLAFVLVVILSVFFISNVYVKWSASPIIISTS
AKQKLTSNMPFPAITICNLNQALLSKVDRIGRTSTNFSLLMGLCDQGGDT
TISYIGTWKYFKAILVDVAQPCEKMLLYCSFGSREEDCSWLFTSILTDDG
LCCNFNALHPSYLIRNYSDDVRLETAHPNTRYELIDWTPEKGYARNLPEF
YFPRTSGGTGIRMGLTVVLNASIAEYYCTKSMSVGFKVLVHNPAELPKVS
NYGFVVTAGREARIPIEPVYEDALPTIRSIKKSVRRCLFSDENDLAYYRT
YSRKNCELECEAKLLLRECSCVLYYLPRIDPLARVCGPNDNQCTDRVQTE
IESSLTNLSCENCWPGCFELTYRATLSTASIVSDPRFQAGENLPEYIFHG
PYSNASEISILHFYYMTNIFRSTTKSEMFGFTEFLSNTGGLLGLFMGFSI
FSVIEIFFYITVRPYCASRTLRQRHKRRLEQLSWLTPIRMPVRRALRRNR
GGLLRNPPPPAYSDLQKFRGKLDKPETCKRKLWRTLQVRPVVDRADEELP
TYPYLD*

RT06769.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21749-PA 609 GF21749-PA 1..609 1..606 2677 82.5 Plus
Dana\GF22699-PA 312 GF22699-PA 1..291 1..289 1286 83.8 Plus
Dana\GF11893-PA 574 GF11893-PA 24..528 38..551 858 35.9 Plus
Dana\GF22642-PA 583 GF22642-PA 37..553 33..542 791 32.2 Plus
Dana\GF23723-PA 501 GF23723-PA 22..489 43..510 783 35.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19083-PA 605 GG19083-PA 1..605 1..606 3077 95.5 Plus
Dere\GG22192-PA 569 GG22192-PA 21..504 35..514 895 39.1 Plus
Dere\GG16195-PA 472 GG16195-PA 16..460 65..510 739 33.6 Plus
Dere\GG18660-PA 432 GG18660-PA 1..395 139..533 608 31.4 Plus
Dere\GG12538-PA 562 GG12538-PA 16..553 4..515 574 28.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11924-PA 601 GH11924-PA 22..601 17..606 2131 68 Plus
Dgri\GH21367-PA 580 GH21367-PA 17..503 35..514 796 36 Plus
Dgri\GH16657-PA 517 GH16657-PA 23..510 43..519 781 32.3 Plus
Dgri\GH12436-PA 589 GH12436-PA 65..576 43..513 572 29.3 Plus
Dgri\GH14886-PA 598 GH14886-PA 46..598 23..545 507 26.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
ppk28-PA 606 CG4805-PA 1..606 1..606 3207 100 Plus
ppk12-PA 569 CG10972-PA 24..504 38..514 885 38.1 Plus
ppk8-PH 569 CG32792-PH 32..532 33..533 827 32 Plus
ppk5-PB 474 CG33289-PB 4..462 52..510 755 33.5 Plus
ppk5-PC 405 CG33289-PC 4..377 52..422 667 34.9 Plus
ppk8-PG 432 CG32792-PG 22..395 158..533 597 31.6 Plus
rpk-PA 562 CG1058-PA 16..551 4..513 571 28.2 Plus
rpk-PB 568 CG1058-PB 16..557 4..513 554 27.9 Plus
ppk26-PC 597 CG8546-PC 41..590 19..532 549 27.1 Plus
ppk-PA 606 CG3478-PA 60..590 34..526 476 25.5 Plus
ppk16-PA 531 CG34059-PA 59..523 43..514 403 25.4 Plus
ppk6-PA 498 CG11209-PA 11..498 13..531 294 21.7 Plus
Nach-PD 535 CG8178-PD 23..504 36..533 284 21 Plus
ppk7-PA 573 CG9499-PA 40..513 45..528 273 23.5 Plus
Nach-PE 553 CG8178-PE 23..522 36..533 267 20.3 Plus
Nach-PA 516 CG8178-PA 23..485 36..533 264 20.8 Plus
ppk11-PA 516 CG34058-PA 82..510 26..539 252 23.1 Plus
ppk22-PB 561 CG31105-PB 45..529 44..511 209 20.9 Plus
ppk20-PB 564 CG7577-PB 4..501 13..512 206 20.3 Plus
ppk24-PA 595 CG15555-PA 48..561 23..519 201 22.5 Plus
ppk19-PA 511 CG18287-PA 39..491 46..510 184 19.9 Plus
ppk18-PA 553 CG44152-PA 16..512 43..511 184 20.2 Plus
ppk13-PA 460 CG33508-PA 264..453 327..532 170 26 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15345-PA 603 GI15345-PA 36..603 22..606 2226 71.8 Plus
Dmoj\GI15707-PA 606 GI15707-PA 37..557 24..544 930 33.9 Plus
Dmoj\GI20562-PA 570 GI20562-PA 15..504 33..514 848 35.3 Plus
Dmoj\GI13694-PA 520 GI13694-PA 13..495 35..513 770 33.7 Plus
Dmoj\GI12863-PA 601 GI12863-PA 42..592 14..530 512 27.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17548-PA 566 GL17548-PA 19..502 35..514 868 36.8 Plus
Dper\GL15946-PA 578 GL15946-PA 38..517 33..514 825 32.9 Plus
Dper\GL16515-PA 485 GL16515-PA 1..183 1..184 772 81.5 Plus
Dper\GL21653-PA 570 GL21653-PA 46..570 43..531 526 27.8 Plus
Dper\GL26473-PA 556 GL26473-PA 40..550 19..533 456 26.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18445-PA 596 GA18445-PA 1..596 1..606 2453 80.7 Plus
Dpse\GA10679-PB 566 GA10679-PB 22..502 38..514 864 36.8 Plus
Dpse\GA17142-PA 578 GA17142-PA 38..517 33..514 829 32.9 Plus
Dpse\GA23355-PA 435 GA23355-PA 5..422 107..508 641 33.3 Plus
Dpse\GA21154-PA 596 GA21154-PA 40..590 19..533 529 27.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13471-PA 605 GM13471-PA 1..605 1..606 3124 96.5 Plus
Dsec\GM15912-PA 569 GM15912-PA 21..504 35..514 886 38.8 Plus
Dsec\GM12297-PA 489 GM12297-PA 3..452 84..533 741 32.5 Plus
Dsec\GM14846-PA 598 GM14846-PA 42..591 19..532 548 27.6 Plus
Dsec\GM10769-PA 551 GM10769-PA 16..542 4..515 509 27.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17312-PA 605 GD17312-PA 1..605 1..606 3123 96.7 Plus
Dsim\GD11671-PA 574 GD11671-PA 21..509 35..514 881 37.3 Plus
Dsim\GD14969-PA 435 GD14969-PA 2..423 52..473 666 32.8 Plus
Dsim\GD19743-PA 562 GD19743-PA 16..553 4..515 569 28 Plus
Dsim\GD22009-PA 606 GD22009-PA 60..590 34..526 464 25.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19317-PA 639 GJ19317-PA 76..639 27..606 2126 70.6 Plus
Dvir\GJ22416-PA 571 GJ22416-PA 17..503 35..514 884 36.3 Plus
Dvir\GJ11315-PA 522 GJ11315-PA 15..498 36..513 746 33.5 Plus
Dvir\GJ19160-PA 573 GJ19160-PA 55..560 43..513 560 29.2 Plus
Dvir\GJ13005-PA 600 GJ13005-PA 42..591 14..530 509 26.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25370-PA 592 GK25370-PA 25..592 30..606 2280 73.7 Plus
Dwil\GK16264-PA 671 GK16264-PA 90..624 8..528 891 32.8 Plus
Dwil\GK20821-PA 542 GK20821-PA 17..499 35..514 855 36.8 Plus
Dwil\GK11507-PA 584 GK11507-PA 56..571 43..513 584 29.6 Plus
Dwil\GK17385-PA 607 GK17385-PA 51..600 19..532 531 26.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17629-PA 605 GE17629-PA 1..605 1..606 3064 94.6 Plus
Dyak\GE14185-PA 567 GE14185-PA 21..504 35..514 896 38.9 Plus
Dyak\GE16304-PA 487 GE16304-PA 2..450 85..533 744 32.3 Plus
Dyak\GE19769-PA 458 GE19769-PA 22..454 43..475 672 32.7 Plus
Dyak\GE25429-PA 562 GE25429-PA 16..551 4..513 569 28 Plus

RT06769.hyp Sequence

Translation from 1 to 1818

> RT06769.hyp
MRTLTESRRRQSGSSGCKKDSESDDDENTICSRAAIKRSVVYYLKNSTLH
GLKYIAEESITIPERIFFGLAFVLVVILSVFFISNVYVKWSASPIIISTS
AKQKLTSNMPFPAITICNLNQALLSKVDRIGRTSTNFSLLMGLCDQGGDT
TISYIGTWKYFKAILVDVAQPCEKMLLYCSFGSREEDCSWLFTSILTDDG
LCCNFNALHPSYLIRNYSDDVRLETAHPNTRYELIDWTPEKGYARNLPEF
YFPRTSGGTGIRMGLTVVLNASIAEYYCTKSMSVGFKVLVHNPAELPKVS
NYGFVVTAGREARIPIEPVYEDALPTIRSIKKSVRRCLFSDENDLAYYRT
YSRKNCELECEAKLLLRECSCVLYYLPRIDPLARVCGPNDNQCTDRVQTE
IESSLTNLSCENCWPGCFELTYRATLSTASIVSDPRFQAGENLPEYIFHG
PYSNASEISILHFYYMTNIFRSTTKSEMFGFTEFLSNTGGLLGLFMGFSI
FSVIEIFFYITVRPYCASRTLRQRHKRRLEQLSWLTPIRMPVRRALRRNR
GGLLRNPPPPAYSDLQKFRGKLDKPETCKRKLWRTLQVRPVVDRADEELP
TYPYLD

RT06769.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
ppk28-PA 606 CG4805-PA 1..606 1..606 3207 100 Plus
ppk12-PA 569 CG10972-PA 24..504 38..514 885 38.1 Plus
ppk8-PH 569 CG32792-PH 32..532 33..533 827 32 Plus
ppk5-PB 474 CG33289-PB 4..462 52..510 755 33.5 Plus
ppk5-PC 405 CG33289-PC 4..377 52..422 667 34.9 Plus