Clone RT06777 Report

Search the DGRC for RT06777

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:67
Well:77
Vector:pCR2.1
Associated Gene/TranscriptTwdlR-RA
Protein status:RT06777.pep: gold
Sequenced Size:978

Clone Sequence Records

RT06777.complete Sequence

978 bp assembled on 2011-07-27

GenBank Submission: BT122078.2

> RT06777.complete
ATGTTTTTTGCTCTTCACATTGGTTATATCATGCTGGGGATAGTGTTTCT
TACGTTGTTGGCCGGCAGCTCTGCCGAACTGGGCTACCAGTATCAGCAAA
ACAGTTATGGAGGACCTGTGAATAGCTATGGAAACGAAGCAGTTTTGGGT
GATGAACGATACCACAGTCAACCGGGAAATCATTACCAGGAGAACGCAGA
CTTTCACAAGCACTTTTACGCCTTCGAGGCTCCTTACGATTCCGTGGAGG
AGGTGGATTTAGCGGAAACTAAGTTATCATCCCTTGCCCAGAAAAACCTG
CAAGTGGTGTTTATCAAGGCTCCGGAAAATAAGGCGGTGGTGGGTGCTCT
AAACGCCTTGGCGAAGCAAACCAGTGAGGATAAGACGGCCATCTACGTGC
TCAACAAACAGACGGATGTCAATGAGCTGGCAAGCCAACTTAGTGCCCTT
AAGGCACACCACAAACATAAGCCGCAGGTTCATTTCGTTAAGTACAAGAC
GGAGGAGGAAGCTGCTCAGGCCCAACAATATATTCAGGCCCAATACGGCG
GAGGATCTTCGATTCCCCAGCCGGGAAAAGCATCCTCCTTGGGATATTAC
CCTGAGCAGCAGCCACAGTATGAGCAGGATGCCCCATCTGAAGAGTATCC
AGCTGGCCAAGTAGGTTATCTGCCATCCCCTCAACAGTCCGCCTATCAGC
CGCAGTCCGGATATCTGCCACCCTTGCCCAGTTACTCCTCCATTTCACAG
GGCTACAATGCTGCTGGATCTTCAGCTGGAGTTTCCACCATTGGACAGAT
TGATCTGCCACCTGTTCCCGAGGCTCAGCAGGATCTAACCGGAAACTATA
ATAATGCCGGTGTGGACTACCGCTCTGCGAGATCAAGGCGCGTTGACTTT
CGGGCCAACGAGCGACATAGGCGTGGAAGCAGGATGGTCTTTCCCTCGGC
CAACCCTGGGAAACGACTGCGGCTCTGA

RT06777.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlR.a 1225 TwdlR.a 12..987 1..976 4865 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22458099..22459031 45..977 4500 98.8 Plus
chr3R 27901430 chr3R 22458000..22458044 1..45 225 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:43:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26634984..26635917 45..978 4655 99.9 Plus
3R 32079331 3R 26634885..26634929 1..45 225 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26375815..26376748 45..978 4655 99.8 Plus
3R 31820162 3R 26375716..26375760 1..45 225 100 Plus
Blast to na_te.dros performed on 2019-03-15 10:50:59 has no hits.

RT06777.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:51:51 Download gff for RT06777.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22458000..22458044 1..45 100 -> Plus
chr3R 22458100..22459031 46..977 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-03-18 17:35:03 Download gff for RT06777.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlR-RA 1..976 1..976 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-07-27 09:25:34 Download gff for RT06777.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlR-RA 1..978 1..978 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:26:51 Download gff for RT06777.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlR-RA 1..978 1..978 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:13:40 Download gff for RT06777.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlR-RA 1..978 1..978 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-03-18 17:35:03 Download gff for RT06777.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlR-RA 12..987 1..976 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-27 09:25:34 Download gff for RT06777.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlR-RA 12..988 1..977 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:26:51 Download gff for RT06777.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlR-RA 1..977 1..977 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:40 Download gff for RT06777.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlR-RA 1..977 1..977 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:51 Download gff for RT06777.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26634885..26634929 1..45 100 -> Plus
3R 26634985..26635916 46..977 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:51 Download gff for RT06777.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26634885..26634929 1..45 100 -> Plus
3R 26634985..26635916 46..977 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:51 Download gff for RT06777.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26634885..26634929 1..45 100 -> Plus
3R 26634985..26635916 46..977 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:26:51 Download gff for RT06777.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22460607..22460651 1..45 100 -> Plus
arm_3R 22460707..22461638 46..977 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:09:48 Download gff for RT06777.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26375816..26376747 46..977 99   Plus
3R 26375716..26375760 1..45 100 -> Plus

RT06777.pep Sequence

Translation from 0 to 977

> RT06777.pep
MFFALHIGYIMLGIVFLTLLAGSSAELGYQYQQNSYGGPVNSYGNEAVLG
DERYHSQPGNHYQENADFHKHFYAFEAPYDSVEEVDLAETKLSSLAQKNL
QVVFIKAPENKAVVGALNALAKQTSEDKTAIYVLNKQTDVNELASQLSAL
KAHHKHKPQVHFVKYKTEEEAAQAQQYIQAQYGGGSSIPQPGKASSLGYY
PEQQPQYEQDAPSEEYPAGQVGYLPSPQQSAYQPQSGYLPPLPSYSSISQ
GYNAAGSSAGVSTIGQIDLPPVPEAQQDLTGNYNNAGVDYRSARSRRVDF
RANERHRRGSRMVFPSANPGKRLRL*

RT06777.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16447-PA 315 GF16447-PA 1..291 11..316 992 73 Plus
Dana\GF16450-PA 256 GF16450-PA 1..202 11..204 291 39.6 Plus
Dana\GF18571-PA 234 GF18571-PA 1..200 11..199 287 36.9 Plus
Dana\GF16449-PA 263 GF16449-PA 85..219 67..199 279 45.6 Plus
Dana\GF18196-PA 253 GF18196-PA 83..253 67..238 275 38.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11492-PA 315 GG11492-PA 1..315 11..325 1421 89.8 Plus
Dere\GG11489-PA 274 GG11489-PA 79..256 60..241 290 40.2 Plus
Dere\GG12179-PA 239 GG12179-PA 1..215 11..205 286 36.8 Plus
Dere\GG12183-PA 220 GG12183-PA 1..211 11..240 285 37.2 Plus
Dere\GG11494-PA 262 GG11494-PA 1..217 11..199 282 37.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18730-PA 313 GH18730-PA 1..292 11..322 706 55.1 Plus
Dgri\GH23188-PA 313 GH23188-PA 1..292 11..322 706 55.1 Plus
Dgri\GH18726-PA 286 GH18726-PA 97..274 67..247 291 39.7 Plus
Dgri\GH18876-PA 232 GH18876-PA 1..224 11..226 290 35 Plus
Dgri\GH18874-PA 229 GH18874-PA 68..228 67..226 289 40.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlR-PA 325 CG31081-PA 1..325 1..325 1692 100 Plus
TwdlP-PA 220 CG14240-PA 1..211 11..240 331 37.3 Plus
TwdlJ-PB 274 CG5471-PB 79..262 60..247 325 39.8 Plus
TwdlO-PA 229 CG6452-PA 31..220 40..226 315 39.1 Plus
Tb-PA 283 CG5480-PA 80..278 60..240 312 38.9 Plus
TwdlD-PA 256 CG14243-PA 1..247 11..225 306 38.7 Plus
TwdlM-PA 288 CG5468-PA 98..282 37..226 300 39.6 Plus
TwdlN-PA 309 CG5476-PA 143..278 66..199 294 44.5 Plus
TwdlK-PA 247 CG6460-PA 76..239 60..226 292 40 Plus
TwdlQ-PA 245 CG14250-PA 1..208 11..199 288 36.4 Plus
TwdlH-PA 241 CG31080-PA 4..235 14..236 285 33.6 Plus
TwdlL-PB 279 CG6447-PB 116..251 66..199 285 43.8 Plus
TwdlL-PA 285 CG6447-PA 122..257 66..199 285 43.8 Plus
TwdlB-PA 286 CG6478-PA 122..257 66..199 284 43.8 Plus
TwdlF-PA 354 CG14639-PA 134..345 63..244 225 35.7 Plus
TwdlW-PA 308 CG4060-PA 131..307 70..228 215 35.8 Plus
TwdlG-PC 278 CG14643-PC 74..241 25..194 200 32.4 Plus
TwdlG-PB 278 CG14643-PB 74..241 25..194 200 32.4 Plus
TwdlG-PA 278 CG14643-PA 74..241 25..194 200 32.4 Plus
TwdlX-PA 346 CG32571-PA 93..283 22..198 200 35.5 Plus
TwdlV-PA 251 CG14640-PA 63..202 52..194 190 37.5 Plus
TwdlY-PA 247 CG32570-PA 11..243 17..226 187 35.6 Plus
Twdlalpha-PA 388 CG32574-PA 138..284 38..182 186 35.9 Plus
TwdlZ-PB 210 CG32569-PB 37..197 70..212 161 36.4 Plus
TwdlC-PA 360 CG14254-PA 95..319 39..249 156 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22882-PA 320 GI22882-PA 1..298 11..321 705 51.9 Plus
Dmoj\GI24737-PA 231 GI24737-PA 1..220 11..240 302 34.7 Plus
Dmoj\GI22884-PA 255 GI22884-PA 80..247 67..241 297 42.8 Plus
Dmoj\GI24731-PA 233 GI24731-PA 1..209 11..199 292 36.2 Plus
Dmoj\GI22879-PA 308 GI22879-PA 144..300 66..226 279 45.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23103-PA 402 GL23103-PA 1..380 1..316 943 57.4 Plus
Dper\GL23105-PA 254 GL23105-PA 78..245 67..225 292 45.6 Plus
Dper\GL23102-PA 264 GL23102-PA 94..248 60..213 289 43.9 Plus
Dper\GL24443-PA 277 GL24443-PA 120..246 72..199 287 47.3 Plus
Dper\GL24787-PA 213 GL24787-PA 34..175 60..199 280 45.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27142-PC 348 GA27142-PC 1..326 1..316 970 65.1 Plus
Dpse\GA12855-PA 254 GA12855-PA 78..245 67..225 292 45.6 Plus
Dpse\GA19605-PA 230 GA19605-PA 1..192 11..199 291 39 Plus
Dpse\GA27141-PA 264 GA27141-PA 69..257 32..226 291 39.3 Plus
Dpse\GA12853-PA 225 GA12853-PA 59..194 66..199 290 46.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10335-PA 325 GM10335-PA 1..325 1..325 1557 95.7 Plus
Dsec\GM10337-PA 256 GM10337-PA 1..247 11..225 289 38.8 Plus
Dsec\GM10179-PA 220 GM10179-PA 1..211 11..240 286 37.3 Plus
Dsec\GM10172-PA 244 GM10172-PA 1..207 11..199 273 37 Plus
Dsec\GM10737-PA 223 GM10737-PA 1..182 11..189 268 35.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21295-PA 315 GD21295-PA 1..315 11..325 1466 96.2 Plus
Dsim\GD18131-PA 220 GD18131-PA 1..211 11..240 289 37.8 Plus
Dsim\GD21297-PA 256 GD21297-PA 1..212 11..199 284 38.5 Plus
Dsim\GD18124-PA 245 GD18124-PA 1..208 11..199 269 35.9 Plus
Dsim\GD19708-PA 212 GD19708-PA 40..171 66..189 267 41.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14176-PA 315 GJ14176-PA 1..291 11..316 689 53.6 Plus
Dvir\GJ14175-PA 232 GJ14175-PA 1..225 11..226 301 38.6 Plus
Dvir\GJ14179-PA 255 GJ14179-PA 80..246 67..225 293 44 Plus
Dvir\GJ14557-PA 226 GJ14557-PA 1..225 11..226 288 35.7 Plus
Dvir\GJ14565-PA 226 GJ14565-PA 1..216 11..240 283 37 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13964-PA 225 GK13964-PA 1..192 11..199 315 39.4 Plus
Dwil\GK13960-PA 229 GK13960-PA 36..220 35..226 292 42.9 Plus
Dwil\GK13956-PA 242 GK13956-PA 1..235 11..240 285 33.5 Plus
Dwil\GK13324-PA 260 GK13324-PA 1..216 11..199 279 36.9 Plus
Dwil\GK13959-PA 262 GK13959-PA 52..251 18..216 274 38.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23682-PA 316 GE23682-PA 1..316 11..325 1450 92.1 Plus
Dyak\GE10627-PA 220 GE10627-PA 1..211 11..240 291 38.1 Plus
Dyak\GE23685-PA 268 GE23685-PA 1..216 11..199 288 37.8 Plus
Dyak\GE10619-PA 245 GE10619-PA 1..208 11..199 286 37.1 Plus
Dyak\GE23681-PA 234 GE23681-PA 1..215 11..211 283 36.3 Plus

RT06777.hyp Sequence

Translation from 1 to 975

> RT06777.hyp
MFFALHIGYIMLGIVFLTLLAGSSAELGYQYQQNSYGGPVNSYGNEAVLG
DERYHSQPGNHYQENADFHKHFYAFEAPYDSVEEVDLAETKLSSLAQKNL
QVVFIKAPENKAVVGALNALAKQTSEDKTAIYVLNKQTDVNELASQLSAL
KAHHKHKPQVHFVKYKTEEEAAQAQQYIQAQYGGGSSIPQPGKASSLGYY
PEQQPQYEQDAPSEEYPAGQVGYLPSPQQSAYQPQSGYLPPLPSYSSISQ
GYNAAGSSAGVSTIGQIDLPPVPEAQQDLTGNYNNAGVDYRSARSRRVDF
RANERHRRGSRMVFPSANPGKRLRL

RT06777.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlR-PA 325 CG31081-PA 1..325 1..325 1692 100 Plus
TwdlP-PA 220 CG14240-PA 1..211 11..240 331 37.3 Plus
TwdlJ-PB 274 CG5471-PB 79..262 60..247 325 39.8 Plus
TwdlO-PA 229 CG6452-PA 31..220 40..226 315 39.1 Plus
Tb-PA 283 CG5480-PA 80..278 60..240 312 38.9 Plus