BDGP Sequence Production Resources |
Search the DGRC for RT06825
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 68 |
Well: | 25 |
Vector: | pCR2.1 |
Associated Gene/Transcript | koi-RB |
Protein status: | RT06825.pep: wuzgold |
Sequenced Size: | 1692 |
1692 bp assembled on 2010-03-18
GenBank Submission: BT122079.1
> RT06825.complete ATGGAAGTGCCCACCGTCAGGAGTCCCCAGCGGGAAGCCGAGGCCATTAA GGTAAACATGGCCAGCATTGAACAGAACATCCAGAAAGCCTTGACTGCCG AGGAATACGAAAATATCTTAAACCATGTAAACAGCTACGTGCAGCAGTTG GTCGAGCTGAAAATGCAGCAGCATTCCAAGGAGCTCGCACCGCAACAGAT TGAACTCTTTGTTAAGCTGATGAAGGAAAACCTCAAGCAGATTATGTACA AAACGGAGCTAAGCGAAAAGGATTTGTCTGATCTGGCCATAAAACTGAAA CTGGAGCTGCAAAGCTCAGGCGGTTGGCAAGATGGAGCGAAACTATCACA AGCTAACTTAGAGGAGATAACCAAGCTAATTAAAGCAGAGGTTCACCTCC ACGAATCGCACTACACCATTCAATTGGACAGGATAGACTTTGCATCCCTG CTGGAGCGTATTCTTGCTGCGCCGGCATTGGCAGACTTTGTAGATGCTCG AATAAGTCTTCGGGTGGGAGAGCTCGAGCCAAAGGAGAGTTCCGGTTCCT CAGATGCAGAAGTCCAAATTGAGCGTCTGAACAGGGAAATCGCCTTCATT AAGTTGGCTCTCTCTGACAAGCAAGCGGAGAACGCCGATCTGCACCAATC AATCAGCAATCTGAAGCTCGGCCAAGAGGATTTGCTGGAACGCATACAGC AGCACGAACTTTCCCAGGATAGGCGCTTCCACGGGTTGCTGGCTGAAATA GAAAACAAACTGTCTGCGCTTAACGACTCGCAGTTTGCTCTTCTCAACAA GCAGATCAAGCTATCCCTTGTCGAAATTCTGGGCTTTAAGCAATCCACCG CTGGCGGTTCCGCTGGCCAATTGGATGACTTCGATCTGCAGACCTGGGTA CGCAGCATGTTTGTGGCCAAGGACTACCTGGAGCAGCAGCTGCTAGAGCT GAACAAGCGCACCAATAACAACATTCGCGACGAGATTGAGCGTTCGAGCA TCCTGCTGATGAGCGACATTAGCCAACGACTCAAACGGGAGATTCTTCTG GTTGTGGAGGCCAAGCATAACGAGAGCACCAAAGCGTTGAAGGGCCATAT CCGCGAAGAGGAGGTGCGCCAGATAGTCAAGACGGTGCTAGCTATTTACG ATGCCGACAAGACGGGCCTGGTGGACTTCGCCCTGGAGTCGGCGGGCGGC CAAATCCTTTCCACGCGTTGCACTGAGAGCTACCAGACAAAGTCAGCCCA GATATCGGTGTTTGGAATTCCACTCTGGTATCCCACCAACACGCCGCGGG TCGCCATTTCACCCAATGTGCAGCCAGGGGAATGCTGGGCATTCCAAGGG TTTCCCGGATTTCTAGTGCTAAAGCTCAACTCGTTGGTGTACGTCACTGG ATTCACCCTAGAGCACATACCGAAGAGTCTATCCCCCACAGGAAGAATAG AATCAGCTCCTCGCAACTTCACTGTCTGGGGCTTGGAGCAGGAGAAGGAC CAGGAACCCGTATTGTTCGGCGATTACCAGTTTGAGGACAATGGTGCTTC CCTCCAGTACTTTGCCGTTCAAAACCTGGACATCAAACGGCCGTACGAGA TCGTCGAACTGCGGATCGAGACGAACCATGGCCATCCCACCTATACATGC CTCTACCGGTTTCGCGTGCACGGCAAGCCGCCGGCCACATAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
koi.a | 1826 | koi.a | 135..1826 | 1..1692 | 8445 | 99.9 | Plus |
koi-RA | 1829 | koi-RA | 135..1500 | 1..1366 | 6815 | 99.9 | Plus |
CG3287.d | 2756 | CG3287.d | 2426..2756 | 1..331 | 1655 | 100 | Plus |
koi-RA | 1829 | koi-RA | 1511..1829 | 1374..1692 | 1595 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 2702448..2703813 | 1..1366 | 6755 | 99.6 | Plus |
chr2R | 21145070 | chr2R | 2704046..2704257 | 1479..1690 | 1060 | 100 | Plus |
chr2R | 21145070 | chr2R | 2703869..2703984 | 1365..1480 | 580 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 6815194..6816559 | 1..1366 | 6815 | 99.9 | Plus |
2R | 25286936 | 2R | 6816792..6817005 | 1479..1692 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 6816615..6816730 | 1365..1480 | 580 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 6816393..6817758 | 1..1366 | 6815 | 99.9 | Plus |
2R | 25260384 | 2R | 6817991..6818204 | 1479..1692 | 1070 | 100 | Plus |
2R | 25260384 | 2R | 6817814..6817929 | 1365..1480 | 580 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 2703869..2703983 | 1363..1479 | 98 | -> | Plus |
chr2R | 2704047..2704259 | 1480..1692 | 100 | Plus | |
chr2R | 2702448..2703809 | 1..1362 | 99 | <- | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koi-RA | 1..1693 | 1..1690 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koi-RB | 1..1692 | 1..1692 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koi-RA | 1207..2898 | 1..1692 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koi-RA | 1207..2898 | 1..1692 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koi-RA | 135..1827 | 1..1690 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koi-RB | 135..1826 | 1..1692 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koi-RA | 1391..3082 | 1..1692 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koi-RA | 1391..3082 | 1..1692 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6815194..6816555 | 1..1362 | 99 | <- | Plus |
2R | 6816615..6816729 | 1363..1479 | 98 | -> | Plus |
2R | 6816793..6817005 | 1480..1692 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6815194..6816555 | 1..1362 | 99 | <- | Plus |
2R | 6816615..6816729 | 1363..1479 | 98 | -> | Plus |
2R | 6816793..6817005 | 1480..1692 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6815194..6816555 | 1..1362 | 99 | <- | Plus |
2R | 6816615..6816729 | 1363..1479 | 98 | -> | Plus |
2R | 6816793..6817005 | 1480..1692 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 2704298..2704510 | 1480..1692 | 100 | Plus | |
arm_2R | 2702699..2704060 | 1..1362 | 99 | <- | Plus |
arm_2R | 2704120..2704234 | 1363..1479 | 98 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6816393..6817754 | 1..1362 | 99 | <- | Plus |
2R | 6817814..6817928 | 1363..1479 | 98 | -> | Plus |
2R | 6817992..6818204 | 1480..1692 | 100 | Plus |
Translation from 0 to 1691
> RT06825.pep MEVPTVRSPQREAEAIKVNMASIEQNIQKALTAEEYENILNHVNSYVQQL VELKMQQHSKELAPQQIELFVKLMKENLKQIMYKTELSEKDLSDLAIKLK LELQSSGGWQDGAKLSQANLEEITKLIKAEVHLHESHYTIQLDRIDFASL LERILAAPALADFVDARISLRVGELEPKESSGSSDAEVQIERLNREIAFI KLALSDKQAENADLHQSISNLKLGQEDLLERIQQHELSQDRRFHGLLAEI ENKLSALNDSQFALLNKQIKLSLVEILGFKQSTAGGSAGQLDDFDLQTWV RSMFVAKDYLEQQLLELNKRTNNNIRDEIERSSILLMSDISQRLKREILL VVEAKHNESTKALKGHIREEEVRQIVKTVLAIYDADKTGLVDFALESAGG QILSTRCTESYQTKSAQISVFGIPLWYPTNTPRVAISPNVQPGECWAFQG FPGFLVLKLNSLVYVTGFTLEHIPKSLSPTGRIESAPRNFTVWGLEQEKD QEPVLFGDYQFEDNGASLQYFAVQNLDIKRPYEIVELRIETNHGHPTYTC LYRFRVHGKPPAT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11073-PA | 548 | GF11073-PA | 1..548 | 20..563 | 2415 | 82.5 | Plus |
Dana\GF15387-PA | 280 | GF15387-PA | 112..278 | 385..559 | 164 | 30.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23226-PA | 564 | GG23226-PA | 1..564 | 1..563 | 2728 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21760-PA | 549 | GH21760-PA | 1..549 | 20..563 | 2065 | 71.9 | Plus |
Dgri\GH10752-PA | 200 | GH10752-PA | 68..200 | 425..561 | 169 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
koi-PC | 965 | CG44154-PC | 403..965 | 1..563 | 2839 | 100 | Plus |
koi-PB | 881 | CG44154-PB | 319..881 | 1..563 | 2839 | 100 | Plus |
koi-PA | 965 | CG44154-PA | 403..965 | 1..563 | 2839 | 100 | Plus |
spag4-PB | 275 | CG6589-PB | 113..274 | 391..559 | 176 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19306-PA | 573 | GI19306-PA | 9..572 | 10..563 | 2137 | 73.4 | Plus |
Dmoj\GI16904-PA | 188 | GI16904-PA | 36..188 | 391..553 | 187 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11123-PA | 623 | GL11123-PA | 49..623 | 1..563 | 2243 | 76.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15001-PA | 621 | GA15001-PA | 49..621 | 1..563 | 2253 | 76.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20901-PA | 569 | GM20901-PA | 1..569 | 1..563 | 2860 | 94.7 | Plus |
Dsec\GM11032-PA | 289 | GM11032-PA | 143..288 | 391..559 | 161 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10427-PA | 569 | GD10427-PA | 1..569 | 1..563 | 2890 | 95.6 | Plus |
Dsim\GD11975-PA | 270 | GD11975-PA | 114..269 | 391..553 | 160 | 26.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22184-PA | 547 | GJ22184-PA | 1..546 | 20..563 | 2152 | 75.5 | Plus |
Dvir\GJ12925-PA | 268 | GJ12925-PA | 146..268 | 427..553 | 171 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22143-PA | 563 | GK22143-PA | 12..563 | 8..563 | 2170 | 74.2 | Plus |
Translation from 1 to 1534
> RT06825.hyp MEVPTVRSPQREAEAIKVNMASIEQNIQKALTAEEYENILNHVNSYVQQL VELKMQQHSKELAPQQIELFVKLMKENLKQIMYKTELSEKDLSDLAIKLK LELQSSGGWQDGAKLSQANLEEITKLIKAEVHLHESHYTIQLDRIDFASL LERILAAPALADFVDARISLRVGELEPKESSGSSDAEVQIERLNREIAFI KLALSDKQAENADLHQSISNLKLGQEDLLERIQQHELSQDRRFHGLLAEI ENKLSALNDSQFALLNKQIKLSLVEILGFKQSTAGGSAGQLDDFDLQTWV RSMFVAKDYLEQQLLELNKRTNNNIRDEIERSSILLMSDISQRLKREILL VVEAKHNESTKALKGHIREEEVRQIVKTVLAIYDADKTGLVDFALESAGG QILSTRCTESYQTKSAQISVFGIPLWYPTNTPRVAISPNVQPGECWAFQG FPGFSAKAQLVGVRHWIHPRAHTEESIPHRKNRISSSQLHCLGLGAGEGP GTRIVRRLPV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
koi-PC | 965 | CG44154-PC | 403..856 | 1..454 | 2256 | 100 | Plus |
koi-PB | 881 | CG44154-PB | 319..772 | 1..454 | 2256 | 100 | Plus |
koi-PA | 965 | CG44154-PA | 403..856 | 1..454 | 2256 | 100 | Plus |