Clone RT06825 Report

Search the DGRC for RT06825

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:68
Well:25
Vector:pCR2.1
Associated Gene/Transcriptkoi-RB
Protein status:RT06825.pep: wuzgold
Sequenced Size:1692

Clone Sequence Records

RT06825.complete Sequence

1692 bp assembled on 2010-03-18

GenBank Submission: BT122079.1

> RT06825.complete
ATGGAAGTGCCCACCGTCAGGAGTCCCCAGCGGGAAGCCGAGGCCATTAA
GGTAAACATGGCCAGCATTGAACAGAACATCCAGAAAGCCTTGACTGCCG
AGGAATACGAAAATATCTTAAACCATGTAAACAGCTACGTGCAGCAGTTG
GTCGAGCTGAAAATGCAGCAGCATTCCAAGGAGCTCGCACCGCAACAGAT
TGAACTCTTTGTTAAGCTGATGAAGGAAAACCTCAAGCAGATTATGTACA
AAACGGAGCTAAGCGAAAAGGATTTGTCTGATCTGGCCATAAAACTGAAA
CTGGAGCTGCAAAGCTCAGGCGGTTGGCAAGATGGAGCGAAACTATCACA
AGCTAACTTAGAGGAGATAACCAAGCTAATTAAAGCAGAGGTTCACCTCC
ACGAATCGCACTACACCATTCAATTGGACAGGATAGACTTTGCATCCCTG
CTGGAGCGTATTCTTGCTGCGCCGGCATTGGCAGACTTTGTAGATGCTCG
AATAAGTCTTCGGGTGGGAGAGCTCGAGCCAAAGGAGAGTTCCGGTTCCT
CAGATGCAGAAGTCCAAATTGAGCGTCTGAACAGGGAAATCGCCTTCATT
AAGTTGGCTCTCTCTGACAAGCAAGCGGAGAACGCCGATCTGCACCAATC
AATCAGCAATCTGAAGCTCGGCCAAGAGGATTTGCTGGAACGCATACAGC
AGCACGAACTTTCCCAGGATAGGCGCTTCCACGGGTTGCTGGCTGAAATA
GAAAACAAACTGTCTGCGCTTAACGACTCGCAGTTTGCTCTTCTCAACAA
GCAGATCAAGCTATCCCTTGTCGAAATTCTGGGCTTTAAGCAATCCACCG
CTGGCGGTTCCGCTGGCCAATTGGATGACTTCGATCTGCAGACCTGGGTA
CGCAGCATGTTTGTGGCCAAGGACTACCTGGAGCAGCAGCTGCTAGAGCT
GAACAAGCGCACCAATAACAACATTCGCGACGAGATTGAGCGTTCGAGCA
TCCTGCTGATGAGCGACATTAGCCAACGACTCAAACGGGAGATTCTTCTG
GTTGTGGAGGCCAAGCATAACGAGAGCACCAAAGCGTTGAAGGGCCATAT
CCGCGAAGAGGAGGTGCGCCAGATAGTCAAGACGGTGCTAGCTATTTACG
ATGCCGACAAGACGGGCCTGGTGGACTTCGCCCTGGAGTCGGCGGGCGGC
CAAATCCTTTCCACGCGTTGCACTGAGAGCTACCAGACAAAGTCAGCCCA
GATATCGGTGTTTGGAATTCCACTCTGGTATCCCACCAACACGCCGCGGG
TCGCCATTTCACCCAATGTGCAGCCAGGGGAATGCTGGGCATTCCAAGGG
TTTCCCGGATTTCTAGTGCTAAAGCTCAACTCGTTGGTGTACGTCACTGG
ATTCACCCTAGAGCACATACCGAAGAGTCTATCCCCCACAGGAAGAATAG
AATCAGCTCCTCGCAACTTCACTGTCTGGGGCTTGGAGCAGGAGAAGGAC
CAGGAACCCGTATTGTTCGGCGATTACCAGTTTGAGGACAATGGTGCTTC
CCTCCAGTACTTTGCCGTTCAAAACCTGGACATCAAACGGCCGTACGAGA
TCGTCGAACTGCGGATCGAGACGAACCATGGCCATCCCACCTATACATGC
CTCTACCGGTTTCGCGTGCACGGCAAGCCGCCGGCCACATAA

RT06825.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
koi.a 1826 koi.a 135..1826 1..1692 8445 99.9 Plus
koi-RA 1829 koi-RA 135..1500 1..1366 6815 99.9 Plus
CG3287.d 2756 CG3287.d 2426..2756 1..331 1655 100 Plus
koi-RA 1829 koi-RA 1511..1829 1374..1692 1595 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2702448..2703813 1..1366 6755 99.6 Plus
chr2R 21145070 chr2R 2704046..2704257 1479..1690 1060 100 Plus
chr2R 21145070 chr2R 2703869..2703984 1365..1480 580 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:43:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6815194..6816559 1..1366 6815 99.9 Plus
2R 25286936 2R 6816792..6817005 1479..1692 1070 100 Plus
2R 25286936 2R 6816615..6816730 1365..1480 580 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6816393..6817758 1..1366 6815 99.9 Plus
2R 25260384 2R 6817991..6818204 1479..1692 1070 100 Plus
2R 25260384 2R 6817814..6817929 1365..1480 580 100 Plus
Blast to na_te.dros performed on 2019-03-15 23:25:36 has no hits.

RT06825.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:26:28 Download gff for RT06825.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2703869..2703983 1363..1479 98 -> Plus
chr2R 2704047..2704259 1480..1692 100   Plus
chr2R 2702448..2703809 1..1362 99 <- Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-03-18 17:35:02 Download gff for RT06825.complete
Subject Subject Range Query Range Percent Splice Strand
koi-RA 1..1693 1..1690 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-17 17:09:01 Download gff for RT06825.complete
Subject Subject Range Query Range Percent Splice Strand
koi-RB 1..1692 1..1692 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:49:37 Download gff for RT06825.complete
Subject Subject Range Query Range Percent Splice Strand
koi-RA 1207..2898 1..1692 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:34:03 Download gff for RT06825.complete
Subject Subject Range Query Range Percent Splice Strand
koi-RA 1207..2898 1..1692 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-03-18 17:35:01 Download gff for RT06825.complete
Subject Subject Range Query Range Percent Splice Strand
koi-RA 135..1827 1..1690 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-17 17:09:00 Download gff for RT06825.complete
Subject Subject Range Query Range Percent Splice Strand
koi-RB 135..1826 1..1692 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:49:37 Download gff for RT06825.complete
Subject Subject Range Query Range Percent Splice Strand
koi-RA 1391..3082 1..1692 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:34:03 Download gff for RT06825.complete
Subject Subject Range Query Range Percent Splice Strand
koi-RA 1391..3082 1..1692 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:26:28 Download gff for RT06825.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6815194..6816555 1..1362 99 <- Plus
2R 6816615..6816729 1363..1479 98 -> Plus
2R 6816793..6817005 1480..1692 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:26:28 Download gff for RT06825.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6815194..6816555 1..1362 99 <- Plus
2R 6816615..6816729 1363..1479 98 -> Plus
2R 6816793..6817005 1480..1692 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:26:28 Download gff for RT06825.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6815194..6816555 1..1362 99 <- Plus
2R 6816615..6816729 1363..1479 98 -> Plus
2R 6816793..6817005 1480..1692 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:49:37 Download gff for RT06825.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2704298..2704510 1480..1692 100   Plus
arm_2R 2702699..2704060 1..1362 99 <- Plus
arm_2R 2704120..2704234 1363..1479 98 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:33:01 Download gff for RT06825.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6816393..6817754 1..1362 99 <- Plus
2R 6817814..6817928 1363..1479 98 -> Plus
2R 6817992..6818204 1480..1692 100   Plus

RT06825.pep Sequence

Translation from 0 to 1691

> RT06825.pep
MEVPTVRSPQREAEAIKVNMASIEQNIQKALTAEEYENILNHVNSYVQQL
VELKMQQHSKELAPQQIELFVKLMKENLKQIMYKTELSEKDLSDLAIKLK
LELQSSGGWQDGAKLSQANLEEITKLIKAEVHLHESHYTIQLDRIDFASL
LERILAAPALADFVDARISLRVGELEPKESSGSSDAEVQIERLNREIAFI
KLALSDKQAENADLHQSISNLKLGQEDLLERIQQHELSQDRRFHGLLAEI
ENKLSALNDSQFALLNKQIKLSLVEILGFKQSTAGGSAGQLDDFDLQTWV
RSMFVAKDYLEQQLLELNKRTNNNIRDEIERSSILLMSDISQRLKREILL
VVEAKHNESTKALKGHIREEEVRQIVKTVLAIYDADKTGLVDFALESAGG
QILSTRCTESYQTKSAQISVFGIPLWYPTNTPRVAISPNVQPGECWAFQG
FPGFLVLKLNSLVYVTGFTLEHIPKSLSPTGRIESAPRNFTVWGLEQEKD
QEPVLFGDYQFEDNGASLQYFAVQNLDIKRPYEIVELRIETNHGHPTYTC
LYRFRVHGKPPAT*

RT06825.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11073-PA 548 GF11073-PA 1..548 20..563 2415 82.5 Plus
Dana\GF15387-PA 280 GF15387-PA 112..278 385..559 164 30.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23226-PA 564 GG23226-PA 1..564 1..563 2728 91.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21760-PA 549 GH21760-PA 1..549 20..563 2065 71.9 Plus
Dgri\GH10752-PA 200 GH10752-PA 68..200 425..561 169 29 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
koi-PC 965 CG44154-PC 403..965 1..563 2839 100 Plus
koi-PB 881 CG44154-PB 319..881 1..563 2839 100 Plus
koi-PA 965 CG44154-PA 403..965 1..563 2839 100 Plus
spag4-PB 275 CG6589-PB 113..274 391..559 176 28.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19306-PA 573 GI19306-PA 9..572 10..563 2137 73.4 Plus
Dmoj\GI16904-PA 188 GI16904-PA 36..188 391..553 187 29.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11123-PA 623 GL11123-PA 49..623 1..563 2243 76.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15001-PA 621 GA15001-PA 49..621 1..563 2253 76.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20901-PA 569 GM20901-PA 1..569 1..563 2860 94.7 Plus
Dsec\GM11032-PA 289 GM11032-PA 143..288 391..559 161 27.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10427-PA 569 GD10427-PA 1..569 1..563 2890 95.6 Plus
Dsim\GD11975-PA 270 GD11975-PA 114..269 391..553 160 26.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22184-PA 547 GJ22184-PA 1..546 20..563 2152 75.5 Plus
Dvir\GJ12925-PA 268 GJ12925-PA 146..268 427..553 171 27.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22143-PA 563 GK22143-PA 12..563 8..563 2170 74.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19078-PA 563 GE19078-PA 1..563 1..563 2720 90.6 Plus
Dyak\GE12763-PA 299 GE12763-PA 165..297 423..559 172 28.8 Plus

RT06825.hyp Sequence

Translation from 1 to 1534

> RT06825.hyp
MEVPTVRSPQREAEAIKVNMASIEQNIQKALTAEEYENILNHVNSYVQQL
VELKMQQHSKELAPQQIELFVKLMKENLKQIMYKTELSEKDLSDLAIKLK
LELQSSGGWQDGAKLSQANLEEITKLIKAEVHLHESHYTIQLDRIDFASL
LERILAAPALADFVDARISLRVGELEPKESSGSSDAEVQIERLNREIAFI
KLALSDKQAENADLHQSISNLKLGQEDLLERIQQHELSQDRRFHGLLAEI
ENKLSALNDSQFALLNKQIKLSLVEILGFKQSTAGGSAGQLDDFDLQTWV
RSMFVAKDYLEQQLLELNKRTNNNIRDEIERSSILLMSDISQRLKREILL
VVEAKHNESTKALKGHIREEEVRQIVKTVLAIYDADKTGLVDFALESAGG
QILSTRCTESYQTKSAQISVFGIPLWYPTNTPRVAISPNVQPGECWAFQG
FPGFSAKAQLVGVRHWIHPRAHTEESIPHRKNRISSSQLHCLGLGAGEGP
GTRIVRRLPV*

RT06825.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
koi-PC 965 CG44154-PC 403..856 1..454 2256 100 Plus
koi-PB 881 CG44154-PB 319..772 1..454 2256 100 Plus
koi-PA 965 CG44154-PA 403..856 1..454 2256 100 Plus