Clone Sequence Records
RT06948.complete Sequence
1440 bp assembled on 2011-07-27
GenBank Submission: BT122096.2
> RT06948.complete
ATGTACGGAGAAACTACGCTAAATAAAAACCACGTCATTAAATTTATCAA
ATTGAAAATTAACAACTGCTTGGGCTGCGATGAAGTGGAGATAAACTTCT
CGAAAGCGGACAATGTACACATTATCATCTACAGTTTGGTCACGGATATG
GCAAAGGACCTACCGGCTGTAACGCCCGTGGCCCAGGCCATCCTACTCCT
CTGCTCCCTGACCTATCCGGATTCAGATAGCCTTGAAACGATTCCGCAGC
TGAAAATTGGCAAGGGAAGTGTCTCGATGAGCTTCAAAGTGTATCCCGTG
AATAAGGAAGAGGAGACGGAGCCAGAGTCGGAGAGCGACCTGGATGAGGG
ACCGTCCACCTCGAAACAGGCCCTGGAGCGAATGGTGCAGCGAGCGGAGC
GCAAGGCCAAGGAGGCGTCCACAAGGAACGTACATTCCAAAGGCATCTAT
GTGAACGTAGAGCGAAGATTCGATATGTACTTCGCCCTGGACACCGTTTC
ATATTATATAAACGGCGGCAAACGCCAATCGTGCCCCCTCCCGGAGTTCC
ACGCCAAGTTCTTTGTGCGGCCCCAGCACTCGATCAATCTTCTGAGGCAG
CTGCACGAGAAATGCTCCGGGAACTGGCTAAAGGTCATCCAAAGCGACGG
CGATGGAGACGCCTTCAAAAAGTTCAAAGACCCCGACAGCCCGTTCGAGA
CCTTTGTAAAGCTGTTCGAAAGTAACCCGATCAAACCAAACGATATGATG
GGCAAGTTGGCCAAAACATGCCTGCACGTCAACGAGGCAGTGCGTCTGAC
GGAGCGAGAATTCATACTGGAGGTCTTCAACCAGGTGCGCCACATATTCG
AGTACATCACGGCCCAGGAGTACACAGTGTGGTTTCTGGTACCTTGCCTT
GGTGACAAAGACCAGCTGCGTTCCAAGACCCTCGAAGACTTTGATTTGAC
CAAAGTGCGAACGTCTATTCGTCGAGCCGGTGATACTTCCAACATTTGGT
GGGATCATACTGATCACAACATCAAGGACATTCTATTGGTGGCCTTCCAA
TTGGACCTGGCCACCCATGTCAATCAGTCGGTTCTTGTTATTAGCCATTT
GGAAACGCTGGCGGAGTTTTCCACTATGCAATATGTGACGGCCTTTTTTA
TGAACGACTTCTACGCCAAGAAAAACACGGAACCAAAATGGATCTGCCAC
CGCTATTTGGAGCGCATCATTGATGTGGCCTTGTTCCTGGGCGTCATCGT
CATCATCGAATACCCAAGTGCCTTCACTCTGTTGCAGGAGGGTCGCCACT
TGATCAAGTGCTTCCAAAAGGAAAATGCTGACTCCTCCAGAACCTCCCAA
TGGGAAATATTCGAAGATGTGGTCAAGGAGAACGAGTCCGACCTCGAGTT
TCTCAAGGAGGCCGTGGGCAAAGTCCAGCAGAACGTATAG
RT06948.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ord.a | 3979 | ord.a | 1825..3263 | 1..1439 | 7195 | 100 | Plus |
ord-RA | 2656 | ord-RA | 502..1940 | 1..1439 | 7195 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:51:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 19159417..19160042 | 677..52 | 3130 | 100 | Minus |
chr2R | 21145070 | chr2R | 19158411..19158665 | 1440..1186 | 1245 | 99.2 | Minus |
chr2R | 21145070 | chr2R | 19159104..19159353 | 927..678 | 1235 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 19158864..19159045 | 1107..926 | 910 | 100 | Minus |
chr2R | 21145070 | chr2R | 19158719..19158797 | 1185..1107 | 380 | 98.7 | Minus |
chr2R | 21145070 | chr2R | 19160097..19160151 | 55..1 | 260 | 98.2 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:44:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23273040..23273665 | 677..52 | 3130 | 100 | Minus |
2R | 25286936 | 2R | 23272034..23272288 | 1440..1186 | 1275 | 100 | Minus |
2R | 25286936 | 2R | 23272727..23272976 | 927..678 | 1250 | 100 | Minus |
2R | 25286936 | 2R | 23272487..23272668 | 1107..926 | 910 | 100 | Minus |
2R | 25286936 | 2R | 23272342..23272420 | 1185..1107 | 395 | 100 | Minus |
2R | 25286936 | 2R | 23273720..23273774 | 55..1 | 260 | 98.2 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:13:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 23274239..23274864 | 677..52 | 3130 | 100 | Minus |
2R | 25260384 | 2R | 23273233..23273487 | 1440..1186 | 1275 | 100 | Minus |
2R | 25260384 | 2R | 23273926..23274175 | 927..678 | 1250 | 100 | Minus |
2R | 25260384 | 2R | 23273686..23273867 | 1107..926 | 910 | 100 | Minus |
2R | 25260384 | 2R | 23273541..23273619 | 1185..1107 | 395 | 100 | Minus |
2R | 25260384 | 2R | 23274919..23274973 | 55..1 | 260 | 98.1 | Minus |
Blast to na_te.dros performed on 2019-03-15 10:51:07 has no hits.
RT06948.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:51:55 Download gff for
RT06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 19158411..19158665 | 1186..1440 | 99 | <- | Minus |
chr2R | 19158719..19158796 | 1108..1185 | 98 | <- | Minus |
chr2R | 19158864..19159043 | 928..1107 | 100 | <- | Minus |
chr2R | 19159104..19159353 | 678..927 | 99 | <- | Minus |
chr2R | 19159417..19160042 | 52..677 | 100 | <- | Minus |
chr2R | 19160101..19160151 | 1..51 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-03-23 18:03:57 Download gff for
RT06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ord-RA | 1..1438 | 1..1438 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-07-27 09:25:36 Download gff for
RT06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ord-RA | 1..1440 | 1..1440 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:27:03 Download gff for
RT06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ord-RA | 1..1440 | 1..1440 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:13:49 Download gff for
RT06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ord-RA | 1..1440 | 1..1440 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-03-23 18:03:52 Download gff for
RT06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ord-RA | 502..1939 | 1..1438 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-27 09:25:36 Download gff for
RT06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ord-RA | 502..1941 | 1..1440 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:27:03 Download gff for
RT06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ord-RA | 1763..3202 | 1..1440 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:49 Download gff for
RT06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ord-RA | 1763..3202 | 1..1440 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:55 Download gff for
RT06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23272487..23272666 | 928..1107 | 100 | <- | Minus |
2R | 23272034..23272288 | 1186..1440 | 100 | <- | Minus |
2R | 23272342..23272419 | 1108..1185 | 100 | <- | Minus |
2R | 23272727..23272976 | 678..927 | 100 | <- | Minus |
2R | 23273040..23273665 | 52..677 | 100 | <- | Minus |
2R | 23273724..23273774 | 1..51 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:55 Download gff for
RT06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23272487..23272666 | 928..1107 | 100 | <- | Minus |
2R | 23272034..23272288 | 1186..1440 | 100 | <- | Minus |
2R | 23272342..23272419 | 1108..1185 | 100 | <- | Minus |
2R | 23272727..23272976 | 678..927 | 100 | <- | Minus |
2R | 23273040..23273665 | 52..677 | 100 | <- | Minus |
2R | 23273724..23273774 | 1..51 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:55 Download gff for
RT06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23272487..23272666 | 928..1107 | 100 | <- | Minus |
2R | 23272034..23272288 | 1186..1440 | 100 | <- | Minus |
2R | 23272342..23272419 | 1108..1185 | 100 | <- | Minus |
2R | 23272727..23272976 | 678..927 | 100 | <- | Minus |
2R | 23273040..23273665 | 52..677 | 100 | <- | Minus |
2R | 23273724..23273774 | 1..51 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:27:03 Download gff for
RT06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19159557..19159811 | 1186..1440 | 100 | <- | Minus |
arm_2R | 19159865..19159942 | 1108..1185 | 100 | <- | Minus |
arm_2R | 19160010..19160189 | 928..1107 | 100 | <- | Minus |
arm_2R | 19160250..19160499 | 678..927 | 100 | <- | Minus |
arm_2R | 19160563..19161188 | 52..677 | 100 | <- | Minus |
arm_2R | 19161247..19161297 | 1..51 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:09:53 Download gff for
RT06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23273251..23273505 | 1186..1440 | 100 | <- | Minus |
2R | 23273559..23273636 | 1108..1185 | 100 | <- | Minus |
2R | 23273704..23273883 | 928..1107 | 100 | <- | Minus |
2R | 23273944..23274193 | 678..927 | 100 | <- | Minus |
2R | 23274257..23274882 | 52..677 | 100 | <- | Minus |
2R | 23274941..23274991 | 1..51 | 100 | | Minus |
RT06948.pep Sequence
Translation from 0 to 1439
> RT06948.pep
MYGETTLNKNHVIKFIKLKINNCLGCDEVEINFSKADNVHIIIYSLVTDM
AKDLPAVTPVAQAILLLCSLTYPDSDSLETIPQLKIGKGSVSMSFKVYPV
NKEEETEPESESDLDEGPSTSKQALERMVQRAERKAKEASTRNVHSKGIY
VNVERRFDMYFALDTVSYYINGGKRQSCPLPEFHAKFFVRPQHSINLLRQ
LHEKCSGNWLKVIQSDGDGDAFKKFKDPDSPFETFVKLFESNPIKPNDMM
GKLAKTCLHVNEAVRLTEREFILEVFNQVRHIFEYITAQEYTVWFLVPCL
GDKDQLRSKTLEDFDLTKVRTSIRRAGDTSNIWWDHTDHNIKDILLVAFQ
LDLATHVNQSVLVISHLETLAEFSTMQYVTAFFMNDFYAKKNTEPKWICH
RYLERIIDVALFLGVIVIIEYPSAFTLLQEGRHLIKCFQKENADSSRTSQ
WEIFEDVVKENESDLEFLKEAVGKVQQNV*
RT06948.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:15:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF13305-PA | 494 | GF13305-PA | 29..487 | 15..472 | 1077 | 47.7 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:15:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG20053-PA | 483 | GG20053-PA | 1..483 | 1..479 | 2153 | 82.4 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH23052-PA | 468 | GH23052-PA | 7..466 | 10..473 | 893 | 41 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ord-PB | 479 | CG3134-PB | 1..479 | 1..479 | 2501 | 100 | Plus |
ord-PA | 479 | CG3134-PA | 1..479 | 1..479 | 2501 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI21123-PA | 474 | GI21123-PA | 6..471 | 9..472 | 979 | 44.3 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL11285-PA | 475 | GL11285-PA | 10..461 | 13..472 | 1069 | 45.4 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:15:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA16191-PA | 475 | GA16191-PA | 10..462 | 13..473 | 1067 | 45.5 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:15:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM15567-PA | 406 | GM15567-PA | 154..406 | 227..479 | 1297 | 95.3 | Plus |
Dsec\GM15567-PA | 406 | GM15567-PA | 1..137 | 1..137 | 655 | 89.1 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD25069-PA | 475 | GD25069-PA | 1..475 | 1..475 | 2395 | 93.1 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:16:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ20970-PA | 470 | GJ20970-PA | 6..467 | 9..472 | 981 | 43.6 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:16:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK19556-PA | 475 | GK19556-PA | 216..471 | 214..468 | 540 | 43.6 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE11589-PA | 482 | GE11589-PA | 1..482 | 1..479 | 2138 | 81.4 | Plus |
RT06948.hyp Sequence
Translation from 1 to 1437
> RT06948.hyp
MYGETTLNKNHVIKFIKLKINNCLGCDEVEINFSKADNVHIIIYSLVTDM
AKDLPAVTPVAQAILLLCSLTYPDSDSLETIPQLKIGKGSVSMSFKVYPV
NKEEETEPESESDLDEGPSTSKQALERMVQRAERKAKEASTRNVHSKGIY
VNVERRFDMYFALDTVSYYINGGKRQSCPLPEFHAKFFVRPQHSINLLRQ
LHEKCSGNWLKVIQSDGDGDAFKKFKDPDSPFETFVKLFESNPIKPNDMM
GKLAKTCLHVNEAVRLTEREFILEVFNQVRHIFEYITAQEYTVWFLVPCL
GDKDQLRSKTLEDFDLTKVRTSIRRAGDTSNIWWDHTDHNIKDILLVAFQ
LDLATHVNQSVLVISHLETLAEFSTMQYVTAFFMNDFYAKKNTEPKWICH
RYLERIIDVALFLGVIVIIEYPSAFTLLQEGRHLIKCFQKENADSSRTSQ
WEIFEDVVKENESDLEFLKEAVGKVQQNV
RT06948.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ord-PB | 479 | CG3134-PB | 1..479 | 1..479 | 2501 | 100 | Plus |
ord-PA | 479 | CG3134-PA | 1..479 | 1..479 | 2501 | 100 | Plus |
RT06948.hyp2 Sequence
Translation from 1 to 1439
> RT06948.hyp2
MYGETTLNKNHVIKFIKLKINNCLGCDEVEINFSKADNVHIIIYSLVTDM
AKDLPAVTPVAQAILLLCSLTYPDSDSLETIPQLKIGKGSVSMSFKVYPV
NKEEETEPESESDLDEGPSTSKQALERMVQRAERKAKEASTRNVHSKGIY
VNVERRFDMYFALDTVSYYINGGKRQSCPLPEFHAKFFVRPQHSINLLRQ
LHEKCSGNWLKVIQSDGDGDAFKKFKDPDSPFETFVKLFESNPIKPNDMM
GKLAKTCLHVNEAVRLTEREFILEVFNQVRHIFEYITAQEYTVWFLVPCL
GDKDQLRSKTLEDFDLTKVRTSIRRAGDTSNIWWDHTDHNIKDILLVAFQ
LDLATHVNQSVLVISHLETLAEFSTMQYVTAFFMNDFYAKKNTEPKWICH
RYLERIIDVALFLGVIVIIEYPSAFTLLQEGRHLIKCFQKENADSSRTSQ
WEIFEDVVKENESDLEFLKEAVGKVQQNV*
RT06948.hyp2 Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ord-PB | 479 | CG3134-PB | 1..479 | 1..479 | 2501 | 100 | Plus |
ord-PA | 479 | CG3134-PA | 1..479 | 1..479 | 2501 | 100 | Plus |