Clone RT06948 Report

Search the DGRC for RT06948

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:69
Well:48
Vector:pCR2.1
Associated Gene/Transcriptord-RA
Protein status:RT06948.pep: gold
Sequenced Size:1440

Clone Sequence Records

RT06948.complete Sequence

1440 bp assembled on 2011-07-27

GenBank Submission: BT122096.2

> RT06948.complete
ATGTACGGAGAAACTACGCTAAATAAAAACCACGTCATTAAATTTATCAA
ATTGAAAATTAACAACTGCTTGGGCTGCGATGAAGTGGAGATAAACTTCT
CGAAAGCGGACAATGTACACATTATCATCTACAGTTTGGTCACGGATATG
GCAAAGGACCTACCGGCTGTAACGCCCGTGGCCCAGGCCATCCTACTCCT
CTGCTCCCTGACCTATCCGGATTCAGATAGCCTTGAAACGATTCCGCAGC
TGAAAATTGGCAAGGGAAGTGTCTCGATGAGCTTCAAAGTGTATCCCGTG
AATAAGGAAGAGGAGACGGAGCCAGAGTCGGAGAGCGACCTGGATGAGGG
ACCGTCCACCTCGAAACAGGCCCTGGAGCGAATGGTGCAGCGAGCGGAGC
GCAAGGCCAAGGAGGCGTCCACAAGGAACGTACATTCCAAAGGCATCTAT
GTGAACGTAGAGCGAAGATTCGATATGTACTTCGCCCTGGACACCGTTTC
ATATTATATAAACGGCGGCAAACGCCAATCGTGCCCCCTCCCGGAGTTCC
ACGCCAAGTTCTTTGTGCGGCCCCAGCACTCGATCAATCTTCTGAGGCAG
CTGCACGAGAAATGCTCCGGGAACTGGCTAAAGGTCATCCAAAGCGACGG
CGATGGAGACGCCTTCAAAAAGTTCAAAGACCCCGACAGCCCGTTCGAGA
CCTTTGTAAAGCTGTTCGAAAGTAACCCGATCAAACCAAACGATATGATG
GGCAAGTTGGCCAAAACATGCCTGCACGTCAACGAGGCAGTGCGTCTGAC
GGAGCGAGAATTCATACTGGAGGTCTTCAACCAGGTGCGCCACATATTCG
AGTACATCACGGCCCAGGAGTACACAGTGTGGTTTCTGGTACCTTGCCTT
GGTGACAAAGACCAGCTGCGTTCCAAGACCCTCGAAGACTTTGATTTGAC
CAAAGTGCGAACGTCTATTCGTCGAGCCGGTGATACTTCCAACATTTGGT
GGGATCATACTGATCACAACATCAAGGACATTCTATTGGTGGCCTTCCAA
TTGGACCTGGCCACCCATGTCAATCAGTCGGTTCTTGTTATTAGCCATTT
GGAAACGCTGGCGGAGTTTTCCACTATGCAATATGTGACGGCCTTTTTTA
TGAACGACTTCTACGCCAAGAAAAACACGGAACCAAAATGGATCTGCCAC
CGCTATTTGGAGCGCATCATTGATGTGGCCTTGTTCCTGGGCGTCATCGT
CATCATCGAATACCCAAGTGCCTTCACTCTGTTGCAGGAGGGTCGCCACT
TGATCAAGTGCTTCCAAAAGGAAAATGCTGACTCCTCCAGAACCTCCCAA
TGGGAAATATTCGAAGATGTGGTCAAGGAGAACGAGTCCGACCTCGAGTT
TCTCAAGGAGGCCGTGGGCAAAGTCCAGCAGAACGTATAG

RT06948.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
ord.a 3979 ord.a 1825..3263 1..1439 7195 100 Plus
ord-RA 2656 ord-RA 502..1940 1..1439 7195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19159417..19160042 677..52 3130 100 Minus
chr2R 21145070 chr2R 19158411..19158665 1440..1186 1245 99.2 Minus
chr2R 21145070 chr2R 19159104..19159353 927..678 1235 99.6 Minus
chr2R 21145070 chr2R 19158864..19159045 1107..926 910 100 Minus
chr2R 21145070 chr2R 19158719..19158797 1185..1107 380 98.7 Minus
chr2R 21145070 chr2R 19160097..19160151 55..1 260 98.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:44:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23273040..23273665 677..52 3130 100 Minus
2R 25286936 2R 23272034..23272288 1440..1186 1275 100 Minus
2R 25286936 2R 23272727..23272976 927..678 1250 100 Minus
2R 25286936 2R 23272487..23272668 1107..926 910 100 Minus
2R 25286936 2R 23272342..23272420 1185..1107 395 100 Minus
2R 25286936 2R 23273720..23273774 55..1 260 98.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23274239..23274864 677..52 3130 100 Minus
2R 25260384 2R 23273233..23273487 1440..1186 1275 100 Minus
2R 25260384 2R 23273926..23274175 927..678 1250 100 Minus
2R 25260384 2R 23273686..23273867 1107..926 910 100 Minus
2R 25260384 2R 23273541..23273619 1185..1107 395 100 Minus
2R 25260384 2R 23274919..23274973 55..1 260 98.1 Minus
Blast to na_te.dros performed on 2019-03-15 10:51:07 has no hits.

RT06948.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:51:55 Download gff for RT06948.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19158411..19158665 1186..1440 99 <- Minus
chr2R 19158719..19158796 1108..1185 98 <- Minus
chr2R 19158864..19159043 928..1107 100 <- Minus
chr2R 19159104..19159353 678..927 99 <- Minus
chr2R 19159417..19160042 52..677 100 <- Minus
chr2R 19160101..19160151 1..51 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-03-23 18:03:57 Download gff for RT06948.complete
Subject Subject Range Query Range Percent Splice Strand
ord-RA 1..1438 1..1438 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-07-27 09:25:36 Download gff for RT06948.complete
Subject Subject Range Query Range Percent Splice Strand
ord-RA 1..1440 1..1440 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:27:03 Download gff for RT06948.complete
Subject Subject Range Query Range Percent Splice Strand
ord-RA 1..1440 1..1440 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:13:49 Download gff for RT06948.complete
Subject Subject Range Query Range Percent Splice Strand
ord-RA 1..1440 1..1440 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-03-23 18:03:52 Download gff for RT06948.complete
Subject Subject Range Query Range Percent Splice Strand
ord-RA 502..1939 1..1438 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-27 09:25:36 Download gff for RT06948.complete
Subject Subject Range Query Range Percent Splice Strand
ord-RA 502..1941 1..1440 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:27:03 Download gff for RT06948.complete
Subject Subject Range Query Range Percent Splice Strand
ord-RA 1763..3202 1..1440 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:49 Download gff for RT06948.complete
Subject Subject Range Query Range Percent Splice Strand
ord-RA 1763..3202 1..1440 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:55 Download gff for RT06948.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23272487..23272666 928..1107 100 <- Minus
2R 23272034..23272288 1186..1440 100 <- Minus
2R 23272342..23272419 1108..1185 100 <- Minus
2R 23272727..23272976 678..927 100 <- Minus
2R 23273040..23273665 52..677 100 <- Minus
2R 23273724..23273774 1..51 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:55 Download gff for RT06948.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23272487..23272666 928..1107 100 <- Minus
2R 23272034..23272288 1186..1440 100 <- Minus
2R 23272342..23272419 1108..1185 100 <- Minus
2R 23272727..23272976 678..927 100 <- Minus
2R 23273040..23273665 52..677 100 <- Minus
2R 23273724..23273774 1..51 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:55 Download gff for RT06948.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23272487..23272666 928..1107 100 <- Minus
2R 23272034..23272288 1186..1440 100 <- Minus
2R 23272342..23272419 1108..1185 100 <- Minus
2R 23272727..23272976 678..927 100 <- Minus
2R 23273040..23273665 52..677 100 <- Minus
2R 23273724..23273774 1..51 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:27:03 Download gff for RT06948.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19159557..19159811 1186..1440 100 <- Minus
arm_2R 19159865..19159942 1108..1185 100 <- Minus
arm_2R 19160010..19160189 928..1107 100 <- Minus
arm_2R 19160250..19160499 678..927 100 <- Minus
arm_2R 19160563..19161188 52..677 100 <- Minus
arm_2R 19161247..19161297 1..51 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:09:53 Download gff for RT06948.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23273251..23273505 1186..1440 100 <- Minus
2R 23273559..23273636 1108..1185 100 <- Minus
2R 23273704..23273883 928..1107 100 <- Minus
2R 23273944..23274193 678..927 100 <- Minus
2R 23274257..23274882 52..677 100 <- Minus
2R 23274941..23274991 1..51 100   Minus

RT06948.pep Sequence

Translation from 0 to 1439

> RT06948.pep
MYGETTLNKNHVIKFIKLKINNCLGCDEVEINFSKADNVHIIIYSLVTDM
AKDLPAVTPVAQAILLLCSLTYPDSDSLETIPQLKIGKGSVSMSFKVYPV
NKEEETEPESESDLDEGPSTSKQALERMVQRAERKAKEASTRNVHSKGIY
VNVERRFDMYFALDTVSYYINGGKRQSCPLPEFHAKFFVRPQHSINLLRQ
LHEKCSGNWLKVIQSDGDGDAFKKFKDPDSPFETFVKLFESNPIKPNDMM
GKLAKTCLHVNEAVRLTEREFILEVFNQVRHIFEYITAQEYTVWFLVPCL
GDKDQLRSKTLEDFDLTKVRTSIRRAGDTSNIWWDHTDHNIKDILLVAFQ
LDLATHVNQSVLVISHLETLAEFSTMQYVTAFFMNDFYAKKNTEPKWICH
RYLERIIDVALFLGVIVIIEYPSAFTLLQEGRHLIKCFQKENADSSRTSQ
WEIFEDVVKENESDLEFLKEAVGKVQQNV*

RT06948.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13305-PA 494 GF13305-PA 29..487 15..472 1077 47.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20053-PA 483 GG20053-PA 1..483 1..479 2153 82.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23052-PA 468 GH23052-PA 7..466 10..473 893 41 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
ord-PB 479 CG3134-PB 1..479 1..479 2501 100 Plus
ord-PA 479 CG3134-PA 1..479 1..479 2501 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21123-PA 474 GI21123-PA 6..471 9..472 979 44.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11285-PA 475 GL11285-PA 10..461 13..472 1069 45.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16191-PA 475 GA16191-PA 10..462 13..473 1067 45.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15567-PA 406 GM15567-PA 154..406 227..479 1297 95.3 Plus
Dsec\GM15567-PA 406 GM15567-PA 1..137 1..137 655 89.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25069-PA 475 GD25069-PA 1..475 1..475 2395 93.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20970-PA 470 GJ20970-PA 6..467 9..472 981 43.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19556-PA 475 GK19556-PA 216..471 214..468 540 43.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11589-PA 482 GE11589-PA 1..482 1..479 2138 81.4 Plus

RT06948.hyp Sequence

Translation from 1 to 1437

> RT06948.hyp
MYGETTLNKNHVIKFIKLKINNCLGCDEVEINFSKADNVHIIIYSLVTDM
AKDLPAVTPVAQAILLLCSLTYPDSDSLETIPQLKIGKGSVSMSFKVYPV
NKEEETEPESESDLDEGPSTSKQALERMVQRAERKAKEASTRNVHSKGIY
VNVERRFDMYFALDTVSYYINGGKRQSCPLPEFHAKFFVRPQHSINLLRQ
LHEKCSGNWLKVIQSDGDGDAFKKFKDPDSPFETFVKLFESNPIKPNDMM
GKLAKTCLHVNEAVRLTEREFILEVFNQVRHIFEYITAQEYTVWFLVPCL
GDKDQLRSKTLEDFDLTKVRTSIRRAGDTSNIWWDHTDHNIKDILLVAFQ
LDLATHVNQSVLVISHLETLAEFSTMQYVTAFFMNDFYAKKNTEPKWICH
RYLERIIDVALFLGVIVIIEYPSAFTLLQEGRHLIKCFQKENADSSRTSQ
WEIFEDVVKENESDLEFLKEAVGKVQQNV

RT06948.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
ord-PB 479 CG3134-PB 1..479 1..479 2501 100 Plus
ord-PA 479 CG3134-PA 1..479 1..479 2501 100 Plus

RT06948.hyp2 Sequence

Translation from 1 to 1439

> RT06948.hyp2
MYGETTLNKNHVIKFIKLKINNCLGCDEVEINFSKADNVHIIIYSLVTDM
AKDLPAVTPVAQAILLLCSLTYPDSDSLETIPQLKIGKGSVSMSFKVYPV
NKEEETEPESESDLDEGPSTSKQALERMVQRAERKAKEASTRNVHSKGIY
VNVERRFDMYFALDTVSYYINGGKRQSCPLPEFHAKFFVRPQHSINLLRQ
LHEKCSGNWLKVIQSDGDGDAFKKFKDPDSPFETFVKLFESNPIKPNDMM
GKLAKTCLHVNEAVRLTEREFILEVFNQVRHIFEYITAQEYTVWFLVPCL
GDKDQLRSKTLEDFDLTKVRTSIRRAGDTSNIWWDHTDHNIKDILLVAFQ
LDLATHVNQSVLVISHLETLAEFSTMQYVTAFFMNDFYAKKNTEPKWICH
RYLERIIDVALFLGVIVIIEYPSAFTLLQEGRHLIKCFQKENADSSRTSQ
WEIFEDVVKENESDLEFLKEAVGKVQQNV*

RT06948.hyp2 Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
ord-PB 479 CG3134-PB 1..479 1..479 2501 100 Plus
ord-PA 479 CG3134-PA 1..479 1..479 2501 100 Plus