Clone RT07038 Report

Search the DGRC for RT07038

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:70
Well:38
Vector:pCR2.1
Associated Gene/TranscriptGr59e-RA
Protein status:RT07038.pep: gold
Sequenced Size:1200

Clone Sequence Records

RT07038.complete Sequence

1200 bp assembled on 2010-06-30

GenBank Submission: BT125048.1

> RT07038.complete
ATGGACAGTTCGTACTGGGAGAATCTGCTGCTGACCATCAATCGGTTCCT
GGGCGTGTATCCCAGTGGGAGAGTGGGCGTACTCCGCTGGCTCCACACGC
TCTGGAGCCTGTTCCTGCTTATGTACATCTGGACTGGCAGCATTGTTAAG
TGCTTGGAGTTCACAGTGGAGATACCCACTATTGAAAAACTGCTCTATCT
GATGGAGTTCCCTGGAAATATGGCCACCATTGCCATCCTGGTATACTATG
CCGTATTGAACCGTCCACTTGCTCACGGAGCGGAACTCCAGATTGAGCGG
ATCATCACAGGACTCAAAGGCAAAGCTAAGCGACTGGTTTATAAGAGACA
TGGTCAGAGGACTCTTCATCTGATGGCGACCACTTTAGTCTTCCATGGCC
TGTGTGTCCTGGTTGACGTGGTCAACTATGACTTCGAGTTCTGGACCACT
TGGAGCAGTAACAGTGTCTACAATTTGCCTGGTCTAATGATGAGTCTGGG
GGTGCTCCAGTATGCCCAGCCCGTCCATTTCCTATGGCTGGTGATGGACC
AGATGAGGATGTGTCTCAAGGAGCTGAAGTTGCTGCAGAGACCACCGCAG
GGTTCGACCAAGTTGGATGCCTGCTACGAGTCCGCCTTTGCTGTCCTAGT
AGATGCGGGTGGAGGATCTGCTCTGATGATTGAAGAGATGAGATACACCT
GCAATCTTATCGAGCAGGTCCACAGCCAGTTTCTACTGAGATTTGGTCTC
TATCTGGTGTTAAACCTGCTCAATTCCTTGGTCAGCATCTGTGTGGAGTT
ATACTTGATCTTCAACTTCTTTGAGACTCCTCTCTGGGAGGAGTCCGTGC
TCCTCGTATACCGCCTGCTCTGGTTGGCCATGCATGGCGGTCGTATCTGG
TTCATCCTGTCGGTCAACGAACAGATCCTGGAGCAGAAATGTAACCTTTG
CCAGCTGCTCAACGAGTTGGAGGTCTGCAGCTCCCGCCTGCAGAGGACCA
TTAATCGCTTCCTGCTGCAGCTCCAGCGGAGTATTGACCAGCCCCTGGAA
GCCTGCGGAATCGTTACGCTGGACACTCGCTCATTGGGCGGGTTTATCGG
CGTCCTGATGGCCATTGTCATTTTCCTCATTCAAATCGGACTGGGCAATA
AGTCGCTAATGGGCGTTGCCCTCAACAGATCCAATTGGGTTTACGTTTGA

RT07038.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
Gr59e-RA 1200 Gr59e-RA 1..1200 1..1200 6000 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19427776..19428711 936..1 4485 98.6 Minus
chr2R 21145070 chr2R 19427554..19427712 1092..934 765 98.7 Minus
chr2R 21145070 chr2R 19427387..19427494 1199..1092 525 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23541444..23542379 936..1 4680 100 Minus
2R 25286936 2R 23541222..23541380 1092..934 795 100 Minus
2R 25286936 2R 23541054..23541162 1200..1092 545 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23542643..23543578 936..1 4680 100 Minus
2R 25260384 2R 23542421..23542579 1092..934 795 100 Minus
2R 25260384 2R 23542253..23542361 1200..1092 545 100 Minus
Blast to na_te.dros performed 2019-03-16 18:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 5725..5812 825..740 120 61.4 Minus

RT07038.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:33:28 Download gff for RT07038.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19427387..19427493 1093..1199 99 <- Minus
chr2R 19427554..19427709 937..1092 98 <- Minus
chr2R 19427776..19428711 1..936 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-06-30 12:20:26 Download gff for RT07038.complete
Subject Subject Range Query Range Percent Splice Strand
Gr59e-RA 1..1199 1..1199 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:37:42 Download gff for RT07038.complete
Subject Subject Range Query Range Percent Splice Strand
Gr59e-RA 1..1199 1..1199 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:11 Download gff for RT07038.complete
Subject Subject Range Query Range Percent Splice Strand
Gr59e-RA 1..1200 1..1200 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:15 Download gff for RT07038.complete
Subject Subject Range Query Range Percent Splice Strand
Gr59e-RA 1..1200 1..1200 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-30 12:20:25 Download gff for RT07038.complete
Subject Subject Range Query Range Percent Splice Strand
Gr59e-RA 1..1199 1..1199 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:37:42 Download gff for RT07038.complete
Subject Subject Range Query Range Percent Splice Strand
Gr59e-RA 1..1199 1..1199 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:11 Download gff for RT07038.complete
Subject Subject Range Query Range Percent Splice Strand
Gr59e-RA 1..1199 1..1199 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:15 Download gff for RT07038.complete
Subject Subject Range Query Range Percent Splice Strand
Gr59e-RA 1..1199 1..1199 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:33:28 Download gff for RT07038.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23541055..23541161 1093..1199 100 <- Minus
2R 23541222..23541377 937..1092 100 <- Minus
2R 23541444..23542379 1..936 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:33:28 Download gff for RT07038.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23541055..23541161 1093..1199 100 <- Minus
2R 23541222..23541377 937..1092 100 <- Minus
2R 23541444..23542379 1..936 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:33:28 Download gff for RT07038.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23541055..23541161 1093..1199 100 <- Minus
2R 23541222..23541377 937..1092 100 <- Minus
2R 23541444..23542379 1..936 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:11 Download gff for RT07038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19428578..19428684 1093..1199 100 <- Minus
arm_2R 19428745..19428900 937..1092 100 <- Minus
arm_2R 19428967..19429902 1..936 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:40:23 Download gff for RT07038.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23542661..23543596 1..936 100   Minus
2R 23542439..23542594 937..1092 100 <- Minus
2R 23542272..23542378 1093..1199 100 <- Minus

RT07038.pep Sequence

Translation from 0 to 1199

> RT07038.pep
MDSSYWENLLLTINRFLGVYPSGRVGVLRWLHTLWSLFLLMYIWTGSIVK
CLEFTVEIPTIEKLLYLMEFPGNMATIAILVYYAVLNRPLAHGAELQIER
IITGLKGKAKRLVYKRHGQRTLHLMATTLVFHGLCVLVDVVNYDFEFWTT
WSSNSVYNLPGLMMSLGVLQYAQPVHFLWLVMDQMRMCLKELKLLQRPPQ
GSTKLDACYESAFAVLVDAGGGSALMIEEMRYTCNLIEQVHSQFLLRFGL
YLVLNLLNSLVSICVELYLIFNFFETPLWEESVLLVYRLLWLAMHGGRIW
FILSVNEQILEQKCNLCQLLNELEVCSSRLQRTINRFLLQLQRSIDQPLE
ACGIVTLDTRSLGGFIGVLMAIVIFLIQIGLGNKSLMGVALNRSNWVYV*

RT07038.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11839-PA 396 GF11839-PA 4..396 7..399 1264 63.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20021-PA 381 GG20021-PA 1..381 1..399 1718 81 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20441-PA 330 GH20441-PA 4..328 52..388 558 39 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
Gr59e-PA 399 CG33151-PA 1..399 1..399 2076 100 Plus
Gr59f-PA 406 CG33150-PA 259..394 241..386 159 28.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19624-PA 364 GI19624-PA 2..362 4..388 546 36.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17604-PA 404 GL17604-PA 6..404 3..399 1268 61.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Gr59e-PB 404 GA17326-PB 6..404 3..399 1251 60.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15532-PA 274 GM15532-PA 1..231 1..231 1132 92.2 Plus
Dsec\GM15533-PA 106 GM15533-PA 1..106 294..399 534 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25037-PA 399 GD25037-PA 1..399 1..399 1988 94.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14992-PA 379 GJ14992-PA 23..377 19..388 562 37.6 Plus
Dvir\GJ15091-PA 420 GJ15091-PA 274..411 248..386 172 30.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23047-PA 400 GK23047-PA 20..400 17..399 907 47.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11557-PA 399 GE11557-PA 1..399 1..399 1868 87.5 Plus

RT07038.hyp Sequence

Translation from 1 to 1197

> RT07038.hyp
MDSSYWENLLLTINRFLGVYPSGRVGVLRWLHTLWSLFLLMYIWTGSIVK
CLEFTVEIPTIEKLLYLMEFPGNMATIAILVYYAVLNRPLAHGAELQIER
IITGLKGKAKRLVYKRHGQRTLHLMATTLVFHGLCVLVDVVNYDFEFWTT
WSSNSVYNLPGLMMSLGVLQYAQPVHFLWLVMDQMRMCLKELKLLQRPPQ
GSTKLDACYESAFAVLVDAGGGSALMIEEMRYTCNLIEQVHSQFLLRFGL
YLVLNLLNSLVSICVELYLIFNFFETPLWEESVLLVYRLLWLAMHGGRIW
FILSVNEQILEQKCNLCQLLNELEVCSSRLQRTINRFLLQLQRSIDQPLE
ACGIVTLDTRSLGGFIGVLMAIVIFLIQIGLGNKSLMGVALNRSNWVYV

RT07038.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Gr59e-PA 399 CG33151-PA 1..399 1..399 2076 100 Plus
Gr59f-PA 406 CG33150-PA 259..394 241..386 159 28.8 Plus