BDGP Sequence Production Resources |
Search the DGRC for RT07038
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 70 |
Well: | 38 |
Vector: | pCR2.1 |
Associated Gene/Transcript | Gr59e-RA |
Protein status: | RT07038.pep: gold |
Sequenced Size: | 1200 |
1200 bp assembled on 2010-06-30
GenBank Submission: BT125048.1
> RT07038.complete ATGGACAGTTCGTACTGGGAGAATCTGCTGCTGACCATCAATCGGTTCCT GGGCGTGTATCCCAGTGGGAGAGTGGGCGTACTCCGCTGGCTCCACACGC TCTGGAGCCTGTTCCTGCTTATGTACATCTGGACTGGCAGCATTGTTAAG TGCTTGGAGTTCACAGTGGAGATACCCACTATTGAAAAACTGCTCTATCT GATGGAGTTCCCTGGAAATATGGCCACCATTGCCATCCTGGTATACTATG CCGTATTGAACCGTCCACTTGCTCACGGAGCGGAACTCCAGATTGAGCGG ATCATCACAGGACTCAAAGGCAAAGCTAAGCGACTGGTTTATAAGAGACA TGGTCAGAGGACTCTTCATCTGATGGCGACCACTTTAGTCTTCCATGGCC TGTGTGTCCTGGTTGACGTGGTCAACTATGACTTCGAGTTCTGGACCACT TGGAGCAGTAACAGTGTCTACAATTTGCCTGGTCTAATGATGAGTCTGGG GGTGCTCCAGTATGCCCAGCCCGTCCATTTCCTATGGCTGGTGATGGACC AGATGAGGATGTGTCTCAAGGAGCTGAAGTTGCTGCAGAGACCACCGCAG GGTTCGACCAAGTTGGATGCCTGCTACGAGTCCGCCTTTGCTGTCCTAGT AGATGCGGGTGGAGGATCTGCTCTGATGATTGAAGAGATGAGATACACCT GCAATCTTATCGAGCAGGTCCACAGCCAGTTTCTACTGAGATTTGGTCTC TATCTGGTGTTAAACCTGCTCAATTCCTTGGTCAGCATCTGTGTGGAGTT ATACTTGATCTTCAACTTCTTTGAGACTCCTCTCTGGGAGGAGTCCGTGC TCCTCGTATACCGCCTGCTCTGGTTGGCCATGCATGGCGGTCGTATCTGG TTCATCCTGTCGGTCAACGAACAGATCCTGGAGCAGAAATGTAACCTTTG CCAGCTGCTCAACGAGTTGGAGGTCTGCAGCTCCCGCCTGCAGAGGACCA TTAATCGCTTCCTGCTGCAGCTCCAGCGGAGTATTGACCAGCCCCTGGAA GCCTGCGGAATCGTTACGCTGGACACTCGCTCATTGGGCGGGTTTATCGG CGTCCTGATGGCCATTGTCATTTTCCTCATTCAAATCGGACTGGGCAATA AGTCGCTAATGGGCGTTGCCCTCAACAGATCCAATTGGGTTTACGTTTGA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gr59e-RA | 1200 | Gr59e-RA | 1..1200 | 1..1200 | 6000 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 19427776..19428711 | 936..1 | 4485 | 98.6 | Minus |
chr2R | 21145070 | chr2R | 19427554..19427712 | 1092..934 | 765 | 98.7 | Minus |
chr2R | 21145070 | chr2R | 19427387..19427494 | 1199..1092 | 525 | 99.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 23541444..23542379 | 936..1 | 4680 | 100 | Minus |
2R | 25286936 | 2R | 23541222..23541380 | 1092..934 | 795 | 100 | Minus |
2R | 25286936 | 2R | 23541054..23541162 | 1200..1092 | 545 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 23542643..23543578 | 936..1 | 4680 | 100 | Minus |
2R | 25260384 | 2R | 23542421..23542579 | 1092..934 | 795 | 100 | Minus |
2R | 25260384 | 2R | 23542253..23542361 | 1200..1092 | 545 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TART-C | 11124 | TART-C TARTC 11124bp | 5725..5812 | 825..740 | 120 | 61.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19427387..19427493 | 1093..1199 | 99 | <- | Minus |
chr2R | 19427554..19427709 | 937..1092 | 98 | <- | Minus |
chr2R | 19427776..19428711 | 1..936 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gr59e-RA | 1..1199 | 1..1199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gr59e-RA | 1..1199 | 1..1199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gr59e-RA | 1..1200 | 1..1200 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gr59e-RA | 1..1200 | 1..1200 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gr59e-RA | 1..1199 | 1..1199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gr59e-RA | 1..1199 | 1..1199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gr59e-RA | 1..1199 | 1..1199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gr59e-RA | 1..1199 | 1..1199 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23541055..23541161 | 1093..1199 | 100 | <- | Minus |
2R | 23541222..23541377 | 937..1092 | 100 | <- | Minus |
2R | 23541444..23542379 | 1..936 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23541055..23541161 | 1093..1199 | 100 | <- | Minus |
2R | 23541222..23541377 | 937..1092 | 100 | <- | Minus |
2R | 23541444..23542379 | 1..936 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23541055..23541161 | 1093..1199 | 100 | <- | Minus |
2R | 23541222..23541377 | 937..1092 | 100 | <- | Minus |
2R | 23541444..23542379 | 1..936 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19428578..19428684 | 1093..1199 | 100 | <- | Minus |
arm_2R | 19428745..19428900 | 937..1092 | 100 | <- | Minus |
arm_2R | 19428967..19429902 | 1..936 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23542661..23543596 | 1..936 | 100 | Minus | |
2R | 23542439..23542594 | 937..1092 | 100 | <- | Minus |
2R | 23542272..23542378 | 1093..1199 | 100 | <- | Minus |
Translation from 0 to 1199
> RT07038.pep MDSSYWENLLLTINRFLGVYPSGRVGVLRWLHTLWSLFLLMYIWTGSIVK CLEFTVEIPTIEKLLYLMEFPGNMATIAILVYYAVLNRPLAHGAELQIER IITGLKGKAKRLVYKRHGQRTLHLMATTLVFHGLCVLVDVVNYDFEFWTT WSSNSVYNLPGLMMSLGVLQYAQPVHFLWLVMDQMRMCLKELKLLQRPPQ GSTKLDACYESAFAVLVDAGGGSALMIEEMRYTCNLIEQVHSQFLLRFGL YLVLNLLNSLVSICVELYLIFNFFETPLWEESVLLVYRLLWLAMHGGRIW FILSVNEQILEQKCNLCQLLNELEVCSSRLQRTINRFLLQLQRSIDQPLE ACGIVTLDTRSLGGFIGVLMAIVIFLIQIGLGNKSLMGVALNRSNWVYV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11839-PA | 396 | GF11839-PA | 4..396 | 7..399 | 1264 | 63.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20021-PA | 381 | GG20021-PA | 1..381 | 1..399 | 1718 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20441-PA | 330 | GH20441-PA | 4..328 | 52..388 | 558 | 39 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gr59e-PA | 399 | CG33151-PA | 1..399 | 1..399 | 2076 | 100 | Plus |
Gr59f-PA | 406 | CG33150-PA | 259..394 | 241..386 | 159 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19624-PA | 364 | GI19624-PA | 2..362 | 4..388 | 546 | 36.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17604-PA | 404 | GL17604-PA | 6..404 | 3..399 | 1268 | 61.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\Gr59e-PB | 404 | GA17326-PB | 6..404 | 3..399 | 1251 | 60.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15532-PA | 274 | GM15532-PA | 1..231 | 1..231 | 1132 | 92.2 | Plus |
Dsec\GM15533-PA | 106 | GM15533-PA | 1..106 | 294..399 | 534 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25037-PA | 399 | GD25037-PA | 1..399 | 1..399 | 1988 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14992-PA | 379 | GJ14992-PA | 23..377 | 19..388 | 562 | 37.6 | Plus |
Dvir\GJ15091-PA | 420 | GJ15091-PA | 274..411 | 248..386 | 172 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23047-PA | 400 | GK23047-PA | 20..400 | 17..399 | 907 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11557-PA | 399 | GE11557-PA | 1..399 | 1..399 | 1868 | 87.5 | Plus |
Translation from 1 to 1197
> RT07038.hyp MDSSYWENLLLTINRFLGVYPSGRVGVLRWLHTLWSLFLLMYIWTGSIVK CLEFTVEIPTIEKLLYLMEFPGNMATIAILVYYAVLNRPLAHGAELQIER IITGLKGKAKRLVYKRHGQRTLHLMATTLVFHGLCVLVDVVNYDFEFWTT WSSNSVYNLPGLMMSLGVLQYAQPVHFLWLVMDQMRMCLKELKLLQRPPQ GSTKLDACYESAFAVLVDAGGGSALMIEEMRYTCNLIEQVHSQFLLRFGL YLVLNLLNSLVSICVELYLIFNFFETPLWEESVLLVYRLLWLAMHGGRIW FILSVNEQILEQKCNLCQLLNELEVCSSRLQRTINRFLLQLQRSIDQPLE ACGIVTLDTRSLGGFIGVLMAIVIFLIQIGLGNKSLMGVALNRSNWVYV