Clone RT07201 Report

Clone Sequence Records

RT07201.complete Sequence

1221 bp assembled on 2010-04-14

GenBank Submission: BT124765.1

> RT07201.complete
ATGATATTGCTCTGGGCGATCGTTCTTATATCGAGTGTGGATCGAACAAA
TGCTCGATGTCTAGAATCTGTGCACTTGGAACACGGTTCGACGGAAATAG
TAAATGGATCCATTATTTTTCATTGCGATCAAGGATACTTTCTACAAGGA
TCGAAAGTGTTCACCTGCGATCGCGGTATTCCTCGAGGGAAAAAACCATT
TTGCGCCAAAAGCGGTTGCCAGGAATACGAACAAATACAGAACGGATTTG
TTTTAAATGCTCCTATGAAAGCTAAGATCATATGTTCGGATGGCCATGGG
TTGGTTGGAAATCGCATTGCCTATTGCGATGGCGAGAAGTGGAGCACCCA
GTTGGGATCCTGCGCATTAAGACGCCAGACGATCGATGTTTCCTGTGATT
TCGAGAGCGAGGATATGTGCGGCTGGACGGCGGAATTGAGCTTCTTGGGA
ACTTGGAAACGGGTCAGTACGGTGGCCGACTTTCACTCTGAGAAAACGGG
TCCCCAAAAAGATCACACGTTCCAAAACCAATCCATCGGACACTACGTGC
GCATGGAGACGGAAAGCGATGCTTTTGGAACCTACCACTTCCTATCGCCA
CTGTATCCCAAGGAGCTCAGTTTGAGTGGCGCCTGCTTCCAGTTTCACTA
CTTCATGTTCGGCAGCGGAGTGGGTAGCCTGCTGGTGTCCATAAAACCCG
TTTCGGTGACTATAGGAGACATATTTAAAACAAACCATCCCTACAAGTTC
GACCAATTCGTGATGACTGGATCACAAGGTGCCAGGTGGCTGGAGCACAC
GATCGATATCAATAAGATGGATGAGGACTTCCAAGTGATCTTTACCGCCA
CGGATGCGAGGTCCCAATACGGAGATATTGCCATCGACGACGTGAAGCTG
ATGGCAGCTAAGGAATGTGCCAGGAGGTCTACCTTCATCGAGGAACCAAA
AAAACCAATAGAAGAATCGGATATCACGGATTCACTGGGCTACCAAATGA
CCGACTGCTCTGGTCGTTGTGGTCAGGACTTTGTTCGGGGAAGGTACATC
AATGAAGGGTGTCGATGCCAAGAATCATGTCTGGTGAACGGCAATTGTTG
CCTAAATTATGTCAAGGAGTGCCATAAAGATCTGGTCATAGCTCCGTATA
ATGAACTCAAATTCTGGAGGCTTTGGAATCTTTGGAGCGGTGATAGTAAT
GTGACTGTCGTACCTAAATAA

RT07201.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:28:31

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Sr-CIV-RA	1403	Sr-CIV-RA	146..1366	1..1221	6090	99.9	Plus
Sr-CII-RA	2188	Sr-CII-RA	968..1084	787..903	285	82.9	Plus
Sr-CI-RA	2290	Sr-CI-RA	968..1060	815..907	240	83.8	Plus
Sr-CI-RA	2290	Sr-CI-RA	607..763	454..610	170	73.8	Plus
Sr-CI-RA	2290	Sr-CI-RA	442..512	289..359	145	80.2	Plus
Sr-CI-RA	2290	Sr-CI-RA	789..861	633..705	140	79.4	Plus
Sr-CII-RA	2188	Sr-CII-RA	817..874	633..690	140	82.7	Plus

Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:38:39

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
chr2L	23010047	chr2L	3522722..3523250	737..209	2630	99.8	Minus
chr2L	23010047	chr2L	3522174..3522655	1219..738	2335	99	Minus
chr2L	23010047	chr2L	3523331..3523538	208..1	1040	100	Minus
chr2R	21145070	chr2R	8097218..8097334	903..787	300	83.8	Minus
chr2L	23010047	chr2L	4122047..4122168	786..907	265	81.1	Plus

Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:44:11 has no hits.

Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:38:37

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
2L	23513712	2L	3523144..3523672	737..209	2630	99.8	Minus
2L	23513712	2L	3522594..3523077	1221..738	2420	100	Minus
2L	23513712	2L	3523753..3523960	208..1	1040	100	Minus
2R	25286936	2R	12209992..12210108	903..787	285	82.9	Minus
2L	23513712	2L	4122748..4122869	786..907	265	81.1	Plus

Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:24:04

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
2L	23513712	2L	3523144..3523672	737..209	2630	99.8	Minus
2L	23513712	2L	3522594..3523077	1221..738	2420	100	Minus
2L	23513712	2L	3523753..3523960	208..1	1040	100	Minus
2R	25260384	2R	12211191..12211307	903..787	285	82.9	Minus
2L	23513712	2L	4122777..4122869	815..907	240	83.8	Plus
2L	23513712	2L	4122291..4122447	454..610	170	73.8	Plus
2L	23513712	2L	4122126..4122196	289..359	145	80.2	Plus
2L	23513712	2L	4122473..4122545	633..705	140	79.4	Plus
2R	25260384	2R	12211512..12211569	690..633	140	82.7	Minus

Blast to na_te.dros performed on 2019-03-15 19:38:38 has no hits.

RT07201.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:39:56 Download gff for RT07201.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
chr2L	3522172..3522655	738..1221	98	<-	Minus
chr2L	3522722..3523250	209..737	99	<-	Minus
chr2L	3523331..3523538	1..208	100		Minus

Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-19 15:45:57 Download gff for RT07201.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Sr-CIV-RA	1..1219	1..1219	99		Plus

Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-17 17:08:23 Download gff for RT07201.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Sr-CIV-RA	1..1221	1..1221	99		Plus

Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:13:27 Download gff for RT07201.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Sr-CIV-RA	1..1221	1..1221	99		Plus

Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:05 Download gff for RT07201.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Sr-CIV-RA	1..1221	1..1221	99		Plus

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 15:45:57 Download gff for RT07201.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Sr-CIV-RA	1..1219	1..1219	99		Plus

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-17 17:08:23 Download gff for RT07201.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Sr-CIV-RA	1..1221	1..1221	99		Plus

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:13:27 Download gff for RT07201.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Sr-CIV-RA	97..1317	1..1221	99		Plus

Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:05 Download gff for RT07201.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Sr-CIV-RA	97..1317	1..1221	99		Plus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:39:56 Download gff for RT07201.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
2L	3522594..3523077	738..1221	100	<-	Minus
2L	3523144..3523672	209..737	99	<-	Minus
2L	3523753..3523960	1..208	100		Minus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:39:56 Download gff for RT07201.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
2L	3522594..3523077	738..1221	100	<-	Minus
2L	3523144..3523672	209..737	99	<-	Minus
2L	3523753..3523960	1..208	100		Minus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:39:56 Download gff for RT07201.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
2L	3522594..3523077	738..1221	100	<-	Minus
2L	3523144..3523672	209..737	99	<-	Minus
2L	3523753..3523960	1..208	100		Minus

Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:13:27 Download gff for RT07201.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
arm_2L	3522594..3523077	738..1221	100	<-	Minus
arm_2L	3523144..3523672	209..737	99	<-	Minus
arm_2L	3523753..3523960	1..208	100		Minus

Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:47:11 Download gff for RT07201.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
2L	3522594..3523077	738..1221	100	<-	Minus
2L	3523144..3523672	209..737	99	<-	Minus
2L	3523753..3523960	1..208	100		Minus

RT07201.pep Sequence

Translation from 0 to 1220

> RT07201.pep
MILLWAIVLISSVDRTNARCLESVHLEHGSTEIVNGSIIFHCDQGYFLQG
SKVFTCDRGIPRGKKPFCAKSGCQEYEQIQNGFVLNAPMKAKIICSDGHG
LVGNRIAYCDGEKWSTQLGSCALRRQTIDVSCDFESEDMCGWTAELSFLG
TWKRVSTVADFHSEKTGPQKDHTFQNQSIGHYVRMETESDAFGTYHFLSP
LYPKELSLSGACFQFHYFMFGSGVGSLLVSIKPVSVTIGDIFKTNHPYKF
DQFVMTGSQGARWLEHTIDINKMDEDFQVIFTATDARSQYGDIAIDDVKL
MAAKECARRSTFIEEPKKPIEESDITDSLGYQMTDCSGRCGQDFVRGRYI
NEGCRCQESCLVNGNCCLNYVKECHKDLVIAPYNELKFWRLWNLWSGDSN
VTVVPK*

RT07201.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:59:10

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dana\GF20691-PA	644	GF20691-PA	13..377	20..374	940	50.3	Plus

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:59:11

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dere\GG24429-PA	406	GG24429-PA	1..406	1..406	1663	75.6	Plus
Dere\GG24983-PA	595	GG24983-PA	1..396	1..388	984	49.2	Plus
Dere\GG22594-PA	596	GG22594-PA	19..390	17..381	967	51.2	Plus
Dere\GG24982-PA	304	GG24982-PA	1..299	9..304	561	39.5	Plus

Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:59:11

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dgri\GH11535-PA	633	GH11535-PA	31..390	18..374	751	42.9	Plus

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:15

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Sr-CIV-PA	406	CG3212-PA	1..406	1..406	2211	100	Plus
Sr-CI-PB	629	CG4099-PB	8..393	6..386	1021	50.5	Plus
Sr-CI-PA	629	CG4099-PA	8..393	6..386	1021	50.5	Plus
Sr-CII-PB	599	CG8856-PB	5..391	3..380	985	49.9	Plus
Sr-CII-PA	599	CG8856-PA	5..391	3..380	985	49.9	Plus
Sr-CIII-PA	320	CG31962-PA	8..314	3..304	591	41	Plus

Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:59:12

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dmoj\GI17026-PA	618	GI17026-PA	32..394	18..374	769	42	Plus

Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:59:13

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dpse\GA25825-PA	677	GA25825-PA	15..382	13..374	899	48.6	Plus

Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:59:14

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dsec\GM18140-PA	356	GM18140-PA	1..331	1..334	1606	90.1	Plus
Dsec\GM18454-PA	621	GM18454-PA	1..393	1..386	979	49.2	Plus
Dsec\GM20374-PA	556	GM20374-PA	6..364	45..406	912	49.5	Plus
Dsec\GM18453-PA	319	GM18453-PA	8..313	3..304	583	39.5	Plus

Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:59:15

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dsim\Sr-CIV-PA	403	GD22748-PA	1..403	1..406	1969	90.1	Plus
Dsim\Sr-CI-PA	622	GD23271-PA	1..393	1..386	999	50	Plus
Dsim\Sr-CII-PA	713	GD15238-PA	4..257	2..252	705	52	Plus
Dsim\Sr-CII-PA	713	GD15238-PA	254..506	136..381	644	50.6	Plus
Dsim\Sr-CIII-PA	320	GD23269-PA	8..314	3..304	398	31.5	Plus

Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:59:15

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dvir\GJ24559-PA	618	GJ24559-PA	25..386	16..374	756	42.3	Plus

Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:59:16

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dwil\GK23906-PA	639	GK23906-PA	23..380	19..374	709	40.4	Plus

Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:59:17

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dyak\Sr-CIV-PA	406	GE14844-PA	1..406	1..406	1720	78.2	Plus
Dyak\Sr-CI-PA	669	GE18272-PA	1..394	1..386	1005	49.5	Plus
Dyak\Sr-CII-PA	601	GE13463-PA	5..395	3..381	991	50.5	Plus
Dyak\GE18271-PA	318	GE18271-PA	1..308	1..305	544	38	Plus

RT07201.hyp Sequence

Translation from 1 to 1218

> RT07201.hyp
MILLWAIVLISSVDRTNARCLESVHLEHGSTEIVNGSIIFHCDQGYFLQG
SKVFTCDRGIPRGKKPFCAKSGCQEYEQIQNGFVLNAPMKAKIICSDGHG
LVGNRIAYCDGEKWSTQLGSCALRRQTIDVSCDFESEDMCGWTAELSFLG
TWKRVSTVADFHSEKTGPQKDHTFQNQSIGHYVRMETESDAFGTYHFLSP
LYPKELSLSGACFQFHYFMFGSGVGSLLVSIKPVSVTIGDIFKTNHPYKF
DQFVMTGSQGARWLEHTIDINKMDEDFQVIFTATDARSQYGDIAIDDVKL
MAAKECARRSTFIEEPKKPIEESDITDSLGYQMTDCSGRCGQDFVRGRYI
NEGCRCQESCLVNGNCCLNYVKECHKDLVIAPYNELKFWRLWNLWSGDSN
VTVVPK

RT07201.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:51:03

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Sr-CIV-PA	406	CG3212-PA	1..406	1..406	2211	100	Plus
Sr-CI-PB	629	CG4099-PB	8..393	6..386	1021	50.5	Plus
Sr-CI-PA	629	CG4099-PA	8..393	6..386	1021	50.5	Plus
Sr-CII-PB	599	CG8856-PB	5..391	3..380	985	49.9	Plus
Sr-CII-PA	599	CG8856-PA	5..391	3..380	985	49.9	Plus

Library:	RT
Tissue Source:	D melanogaster pooled RNA
Created by:
Date Registered:	2006-04-14
Comments:	TA cloning vector from Invitrogen
Original Plate Number:	72
Well:	1
Vector:	pCR2.1
Associated Gene/Transcript	Sr-CIV-RA
Protein status:	RT07201.pep: gold
Sequenced Size:	1221

Clone RT07201 Report

Clone and Library Details

Clone Sequence Records

RT07201.complete Sequence

RT07201.complete Blast Records

RT07201.complete Sim4 Records

RT07201.pep Sequence

RT07201.pep Blast Records

RT07201.hyp Sequence

RT07201.hyp Blast Records