BDGP Sequence Production Resources |
Search the DGRC for RT07201
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 72 |
Well: | 1 |
Vector: | pCR2.1 |
Associated Gene/Transcript | Sr-CIV-RA |
Protein status: | RT07201.pep: gold |
Sequenced Size: | 1221 |
1221 bp assembled on 2010-04-14
GenBank Submission: BT124765.1
> RT07201.complete ATGATATTGCTCTGGGCGATCGTTCTTATATCGAGTGTGGATCGAACAAA TGCTCGATGTCTAGAATCTGTGCACTTGGAACACGGTTCGACGGAAATAG TAAATGGATCCATTATTTTTCATTGCGATCAAGGATACTTTCTACAAGGA TCGAAAGTGTTCACCTGCGATCGCGGTATTCCTCGAGGGAAAAAACCATT TTGCGCCAAAAGCGGTTGCCAGGAATACGAACAAATACAGAACGGATTTG TTTTAAATGCTCCTATGAAAGCTAAGATCATATGTTCGGATGGCCATGGG TTGGTTGGAAATCGCATTGCCTATTGCGATGGCGAGAAGTGGAGCACCCA GTTGGGATCCTGCGCATTAAGACGCCAGACGATCGATGTTTCCTGTGATT TCGAGAGCGAGGATATGTGCGGCTGGACGGCGGAATTGAGCTTCTTGGGA ACTTGGAAACGGGTCAGTACGGTGGCCGACTTTCACTCTGAGAAAACGGG TCCCCAAAAAGATCACACGTTCCAAAACCAATCCATCGGACACTACGTGC GCATGGAGACGGAAAGCGATGCTTTTGGAACCTACCACTTCCTATCGCCA CTGTATCCCAAGGAGCTCAGTTTGAGTGGCGCCTGCTTCCAGTTTCACTA CTTCATGTTCGGCAGCGGAGTGGGTAGCCTGCTGGTGTCCATAAAACCCG TTTCGGTGACTATAGGAGACATATTTAAAACAAACCATCCCTACAAGTTC GACCAATTCGTGATGACTGGATCACAAGGTGCCAGGTGGCTGGAGCACAC GATCGATATCAATAAGATGGATGAGGACTTCCAAGTGATCTTTACCGCCA CGGATGCGAGGTCCCAATACGGAGATATTGCCATCGACGACGTGAAGCTG ATGGCAGCTAAGGAATGTGCCAGGAGGTCTACCTTCATCGAGGAACCAAA AAAACCAATAGAAGAATCGGATATCACGGATTCACTGGGCTACCAAATGA CCGACTGCTCTGGTCGTTGTGGTCAGGACTTTGTTCGGGGAAGGTACATC AATGAAGGGTGTCGATGCCAAGAATCATGTCTGGTGAACGGCAATTGTTG CCTAAATTATGTCAAGGAGTGCCATAAAGATCTGGTCATAGCTCCGTATA ATGAACTCAAATTCTGGAGGCTTTGGAATCTTTGGAGCGGTGATAGTAAT GTGACTGTCGTACCTAAATAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sr-CIV-RA | 1403 | Sr-CIV-RA | 146..1366 | 1..1221 | 6090 | 99.9 | Plus |
Sr-CII-RA | 2188 | Sr-CII-RA | 968..1084 | 787..903 | 285 | 82.9 | Plus |
Sr-CI-RA | 2290 | Sr-CI-RA | 968..1060 | 815..907 | 240 | 83.8 | Plus |
Sr-CI-RA | 2290 | Sr-CI-RA | 607..763 | 454..610 | 170 | 73.8 | Plus |
Sr-CI-RA | 2290 | Sr-CI-RA | 442..512 | 289..359 | 145 | 80.2 | Plus |
Sr-CI-RA | 2290 | Sr-CI-RA | 789..861 | 633..705 | 140 | 79.4 | Plus |
Sr-CII-RA | 2188 | Sr-CII-RA | 817..874 | 633..690 | 140 | 82.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 3522722..3523250 | 737..209 | 2630 | 99.8 | Minus |
chr2L | 23010047 | chr2L | 3522174..3522655 | 1219..738 | 2335 | 99 | Minus |
chr2L | 23010047 | chr2L | 3523331..3523538 | 208..1 | 1040 | 100 | Minus |
chr2R | 21145070 | chr2R | 8097218..8097334 | 903..787 | 300 | 83.8 | Minus |
chr2L | 23010047 | chr2L | 4122047..4122168 | 786..907 | 265 | 81.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 3523144..3523672 | 737..209 | 2630 | 99.8 | Minus |
2L | 23513712 | 2L | 3522594..3523077 | 1221..738 | 2420 | 100 | Minus |
2L | 23513712 | 2L | 3523753..3523960 | 208..1 | 1040 | 100 | Minus |
2R | 25286936 | 2R | 12209992..12210108 | 903..787 | 285 | 82.9 | Minus |
2L | 23513712 | 2L | 4122748..4122869 | 786..907 | 265 | 81.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 3523144..3523672 | 737..209 | 2630 | 99.8 | Minus |
2L | 23513712 | 2L | 3522594..3523077 | 1221..738 | 2420 | 100 | Minus |
2L | 23513712 | 2L | 3523753..3523960 | 208..1 | 1040 | 100 | Minus |
2R | 25260384 | 2R | 12211191..12211307 | 903..787 | 285 | 82.9 | Minus |
2L | 23513712 | 2L | 4122777..4122869 | 815..907 | 240 | 83.8 | Plus |
2L | 23513712 | 2L | 4122291..4122447 | 454..610 | 170 | 73.8 | Plus |
2L | 23513712 | 2L | 4122126..4122196 | 289..359 | 145 | 80.2 | Plus |
2L | 23513712 | 2L | 4122473..4122545 | 633..705 | 140 | 79.4 | Plus |
2R | 25260384 | 2R | 12211512..12211569 | 690..633 | 140 | 82.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 3522172..3522655 | 738..1221 | 98 | <- | Minus |
chr2L | 3522722..3523250 | 209..737 | 99 | <- | Minus |
chr2L | 3523331..3523538 | 1..208 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sr-CIV-RA | 1..1219 | 1..1219 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sr-CIV-RA | 1..1221 | 1..1221 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sr-CIV-RA | 1..1221 | 1..1221 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sr-CIV-RA | 1..1221 | 1..1221 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sr-CIV-RA | 1..1219 | 1..1219 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sr-CIV-RA | 1..1221 | 1..1221 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sr-CIV-RA | 97..1317 | 1..1221 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sr-CIV-RA | 97..1317 | 1..1221 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3522594..3523077 | 738..1221 | 100 | <- | Minus |
2L | 3523144..3523672 | 209..737 | 99 | <- | Minus |
2L | 3523753..3523960 | 1..208 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3522594..3523077 | 738..1221 | 100 | <- | Minus |
2L | 3523144..3523672 | 209..737 | 99 | <- | Minus |
2L | 3523753..3523960 | 1..208 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3522594..3523077 | 738..1221 | 100 | <- | Minus |
2L | 3523144..3523672 | 209..737 | 99 | <- | Minus |
2L | 3523753..3523960 | 1..208 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 3522594..3523077 | 738..1221 | 100 | <- | Minus |
arm_2L | 3523144..3523672 | 209..737 | 99 | <- | Minus |
arm_2L | 3523753..3523960 | 1..208 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3522594..3523077 | 738..1221 | 100 | <- | Minus |
2L | 3523144..3523672 | 209..737 | 99 | <- | Minus |
2L | 3523753..3523960 | 1..208 | 100 | Minus |
Translation from 0 to 1220
> RT07201.pep MILLWAIVLISSVDRTNARCLESVHLEHGSTEIVNGSIIFHCDQGYFLQG SKVFTCDRGIPRGKKPFCAKSGCQEYEQIQNGFVLNAPMKAKIICSDGHG LVGNRIAYCDGEKWSTQLGSCALRRQTIDVSCDFESEDMCGWTAELSFLG TWKRVSTVADFHSEKTGPQKDHTFQNQSIGHYVRMETESDAFGTYHFLSP LYPKELSLSGACFQFHYFMFGSGVGSLLVSIKPVSVTIGDIFKTNHPYKF DQFVMTGSQGARWLEHTIDINKMDEDFQVIFTATDARSQYGDIAIDDVKL MAAKECARRSTFIEEPKKPIEESDITDSLGYQMTDCSGRCGQDFVRGRYI NEGCRCQESCLVNGNCCLNYVKECHKDLVIAPYNELKFWRLWNLWSGDSN VTVVPK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20691-PA | 644 | GF20691-PA | 13..377 | 20..374 | 940 | 50.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24429-PA | 406 | GG24429-PA | 1..406 | 1..406 | 1663 | 75.6 | Plus |
Dere\GG24983-PA | 595 | GG24983-PA | 1..396 | 1..388 | 984 | 49.2 | Plus |
Dere\GG22594-PA | 596 | GG22594-PA | 19..390 | 17..381 | 967 | 51.2 | Plus |
Dere\GG24982-PA | 304 | GG24982-PA | 1..299 | 9..304 | 561 | 39.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11535-PA | 633 | GH11535-PA | 31..390 | 18..374 | 751 | 42.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sr-CIV-PA | 406 | CG3212-PA | 1..406 | 1..406 | 2211 | 100 | Plus |
Sr-CI-PB | 629 | CG4099-PB | 8..393 | 6..386 | 1021 | 50.5 | Plus |
Sr-CI-PA | 629 | CG4099-PA | 8..393 | 6..386 | 1021 | 50.5 | Plus |
Sr-CII-PB | 599 | CG8856-PB | 5..391 | 3..380 | 985 | 49.9 | Plus |
Sr-CII-PA | 599 | CG8856-PA | 5..391 | 3..380 | 985 | 49.9 | Plus |
Sr-CIII-PA | 320 | CG31962-PA | 8..314 | 3..304 | 591 | 41 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17026-PA | 618 | GI17026-PA | 32..394 | 18..374 | 769 | 42 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25825-PA | 677 | GA25825-PA | 15..382 | 13..374 | 899 | 48.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18140-PA | 356 | GM18140-PA | 1..331 | 1..334 | 1606 | 90.1 | Plus |
Dsec\GM18454-PA | 621 | GM18454-PA | 1..393 | 1..386 | 979 | 49.2 | Plus |
Dsec\GM20374-PA | 556 | GM20374-PA | 6..364 | 45..406 | 912 | 49.5 | Plus |
Dsec\GM18453-PA | 319 | GM18453-PA | 8..313 | 3..304 | 583 | 39.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Sr-CIV-PA | 403 | GD22748-PA | 1..403 | 1..406 | 1969 | 90.1 | Plus |
Dsim\Sr-CI-PA | 622 | GD23271-PA | 1..393 | 1..386 | 999 | 50 | Plus |
Dsim\Sr-CII-PA | 713 | GD15238-PA | 4..257 | 2..252 | 705 | 52 | Plus |
Dsim\Sr-CII-PA | 713 | GD15238-PA | 254..506 | 136..381 | 644 | 50.6 | Plus |
Dsim\Sr-CIII-PA | 320 | GD23269-PA | 8..314 | 3..304 | 398 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24559-PA | 618 | GJ24559-PA | 25..386 | 16..374 | 756 | 42.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23906-PA | 639 | GK23906-PA | 23..380 | 19..374 | 709 | 40.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Sr-CIV-PA | 406 | GE14844-PA | 1..406 | 1..406 | 1720 | 78.2 | Plus |
Dyak\Sr-CI-PA | 669 | GE18272-PA | 1..394 | 1..386 | 1005 | 49.5 | Plus |
Dyak\Sr-CII-PA | 601 | GE13463-PA | 5..395 | 3..381 | 991 | 50.5 | Plus |
Dyak\GE18271-PA | 318 | GE18271-PA | 1..308 | 1..305 | 544 | 38 | Plus |
Translation from 1 to 1218
> RT07201.hyp MILLWAIVLISSVDRTNARCLESVHLEHGSTEIVNGSIIFHCDQGYFLQG SKVFTCDRGIPRGKKPFCAKSGCQEYEQIQNGFVLNAPMKAKIICSDGHG LVGNRIAYCDGEKWSTQLGSCALRRQTIDVSCDFESEDMCGWTAELSFLG TWKRVSTVADFHSEKTGPQKDHTFQNQSIGHYVRMETESDAFGTYHFLSP LYPKELSLSGACFQFHYFMFGSGVGSLLVSIKPVSVTIGDIFKTNHPYKF DQFVMTGSQGARWLEHTIDINKMDEDFQVIFTATDARSQYGDIAIDDVKL MAAKECARRSTFIEEPKKPIEESDITDSLGYQMTDCSGRCGQDFVRGRYI NEGCRCQESCLVNGNCCLNYVKECHKDLVIAPYNELKFWRLWNLWSGDSN VTVVPK
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sr-CIV-PA | 406 | CG3212-PA | 1..406 | 1..406 | 2211 | 100 | Plus |
Sr-CI-PB | 629 | CG4099-PB | 8..393 | 6..386 | 1021 | 50.5 | Plus |
Sr-CI-PA | 629 | CG4099-PA | 8..393 | 6..386 | 1021 | 50.5 | Plus |
Sr-CII-PB | 599 | CG8856-PB | 5..391 | 3..380 | 985 | 49.9 | Plus |
Sr-CII-PA | 599 | CG8856-PA | 5..391 | 3..380 | 985 | 49.9 | Plus |