Clone Sequence Records
RT07312.complete Sequence
346 bp assembled on 2010-04-27
GenBank Submission: BT124842.1
> RT07312.complete
ATGGGAGTTGCTACCAAAATCTTTCGTTCGCACGTTCAAGGCAGCAAAAA
AGCAAAAGCAACAGCCACATCAAGAAGCGCAACAAGAAGGCCAAGAACAG
TACGGTACAGTAAGGACTGCCTGTGCGGAATGTTGTGTAAAAATAAATAC
GCCTAATTGGAACTGCCCTGCAAGCCTCACTGTACTTCAGCCCAAAGGAG
ATGGCGTTTGGCGAGCAGGGAGCAAGTGGAGGAGACCCGGGGAGCTGTAG
ACACCGAAACCGAAACAGTAACATCCTGGCGGAAAAGTACTCACATACAT
ATGTACATGTGTACTTGCGCGACGAGTCTAATACCAATAATCCTTT
RT07312.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:16:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34052-RA | 451 | CG34052-RA | 1..346 | 1..346 | 1730 | 100 | Plus |
CG34052.b | 952 | CG34052.b | 1..346 | 1..346 | 1730 | 100 | Plus |
CG34052.a | 616 | CG34052.a | 49..390 | 1..346 | 1645 | 98.8 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:19:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 2215762..2215969 | 346..141 | 975 | 99 | Minus |
chrX | 22417052 | chrX | 2216034..2216174 | 140..1 | 655 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2321855..2322060 | 346..141 | 1030 | 100 | Minus |
X | 23542271 | X | 2322125..2322264 | 140..1 | 700 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 2329953..2330158 | 346..141 | 1030 | 100 | Minus |
X | 23527363 | X | 2330223..2330362 | 140..1 | 700 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 15:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X-element | 4740 | X-element ROXELEMENT 4740bp | 1540..1582 | 42..82 | 110 | 79.1 | Plus |
Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 680..716 | 312..277 | 101 | 78.4 | Minus |
RT07312.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:20:01 Download gff for
RT07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 2215762..2215969 | 141..346 | 99 | <- | Minus |
chrX | 2216034..2216174 | 1..140 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-27 10:50:44 Download gff for
RT07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34052-RA | 1..156 | 1..156 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:24:16 Download gff for
RT07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34052-RA | 1..156 | 1..156 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-27 10:50:44 Download gff for
RT07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34052-RA | 1..346 | 1..346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:24:16 Download gff for
RT07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34052-RA | 1..346 | 1..346 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:20:01 Download gff for
RT07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2321855..2322060 | 141..346 | 100 | <- | Minus |
X | 2322125..2322264 | 1..140 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:20:01 Download gff for
RT07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2321855..2322060 | 141..346 | 100 | <- | Minus |
X | 2322125..2322264 | 1..140 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:20:01 Download gff for
RT07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2321855..2322060 | 141..346 | 100 | <- | Minus |
X | 2322125..2322264 | 1..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:43:08 Download gff for
RT07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2215888..2216093 | 141..346 | 100 | <- | Minus |
arm_X | 2216158..2216297 | 1..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:43:08 Download gff for
RT07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2215888..2216093 | 141..346 | 100 | <- | Minus |
arm_X | 2216158..2216297 | 1..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:43:08 Download gff for
RT07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2215888..2216093 | 141..346 | 100 | <- | Minus |
arm_X | 2216158..2216297 | 1..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:56:17 Download gff for
RT07312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2329953..2330158 | 141..346 | 100 | <- | Minus |
X | 2330223..2330362 | 1..140 | 100 | | Minus |
RT07312.pep Sequence
Translation from 0 to 155
> RT07312.pep
MGVATKIFRSHVQGSKKAKATATSRSATRRPRTVRYSKDCLCGMLCKNKY
A*
RT07312.pep Blast Records
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM19482-PA | 48 | GM19482-PA | 1..44 | 1..44 | 212 | 93.2 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD17976-PA | 48 | GD17976-PA | 1..44 | 1..44 | 206 | 88.6 | Plus |
RT07312.hyp Sequence
Translation from 1 to 249
> RT07312.hyp
WELLPKSFVRTFKAAKKQKQQPHQEAQQEGQEQYGTVRTACAECCVKINT
PNWNCPASLTVLQPKGDGVWRAGSKWRRPGEL*
Sequence RT07312.hyp has no blast hits.