Clone RT07379 Report

Search the DGRC for RT07379

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:73
Well:79
Vector:pCR2.1
Associated Gene/TranscriptCG13653-RA
Protein status:RT07379.pep: gold
Sequenced Size:937

Clone Sequence Records

RT07379.complete Sequence

937 bp assembled on 2010-04-27

GenBank Submission: BT124843.1

> RT07379.complete
CACAACCACCGAACGAAGCACATCGATCTGAAGATGCAGTTGGGAAAAGC
TATCATTCTGATTTTGCTGGCGGCCATCCAGCAAAGCTGCCTGGCTCTCT
ACATCAAGAGCGCGGAGAAGAATCCAGCCAAGACTGGGCCCAAGGACGAT
TGGGGCGTCTTCAAGAACACACTCGGACTAAGCCAAGAAAAAGTTGAACT
GCTAAAATCGCAAAAGGACCAACAAGGCACTAAGGAGCTGCTCAATCGAT
TCATTCTGGAGAACCCAAAGGCACTGCCGAAGGCCAAGCCACAACCCGAT
CAGTTCATGGGACTCTACAGATCCATCCTGAAGAAGCTGACGGCATCCAA
GCGCATGCTGAAGACCTCGTTGAACTTTGAACTGGCCGACAGGCCACACA
AGACCCTAAAAAGGCCGCGCCGTAAGATCGCCGTCAAGATGGTTTCCGAT
ATGCCATCATGGAAGATCGAGAGCCTGCTGAACTCATTCTATCTGAAGCA
CGGAATTCCACGCAACGCCGAGGAGCACGATTATCCCGATCTTGACATGG
CCAGGGATACTGATTACGAATCCGATAATTTCTACGACGACGAGGGAGAT
GTGGGTCTAACGGCCAAGACGCGCCAGAACACTGAGTACGGATCCTTCCA
GGACCTCATTATGCAGGCCAAGATGAACGAGTGGGAGCGGGAGAGCGAAG
AAACCAAATTGCACGGCCCCGACAATGATGACTACATCTAAATCCCTAGA
CTATCGATGATGGAGGGCTGTGCAATAGAGGTTCATATGCTGGCATTGGA
CTTGTCTTTAGGCTAGAGTAGTTTATAATGCCAGAAACGCGCTTTAAATC
AAACGATTGTTTGAGTATTTATTAACATAGCATAGCATATAACTTTCATA
TTTTTTTTTCAACATGAAAATTATAAATAAAGTGACT

RT07379.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13653.c 1646 CG13653.c 710..1646 1..937 4685 100 Plus
CG13653.b 1332 CG13653.b 396..1332 1..937 4685 100 Plus
CG13653-RA 938 CG13653-RA 2..938 1..937 4685 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21018870..21019616 192..937 3640 99.5 Plus
chr3R 27901430 chr3R 21018611..21018803 1..193 965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25195786..25196531 192..937 3730 100 Plus
3R 32079331 3R 25195527..25195719 1..193 965 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24936617..24937362 192..937 3730 100 Plus
3R 31820162 3R 24936358..24936550 1..193 965 100 Plus
Blast to na_te.dros performed 2019-03-15 23:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Paris 1730 Dvir\Paris TV1 1730bp Derived from Z49253. 329..375 231..185 109 70.2 Minus

RT07379.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:06:26 Download gff for RT07379.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21018611..21018803 1..193 100 -> Plus
chr3R 21018872..21019616 194..937 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-27 10:50:45 Download gff for RT07379.complete
Subject Subject Range Query Range Percent Splice Strand
CG13653-RA 1..708 34..741 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:24:17 Download gff for RT07379.complete
Subject Subject Range Query Range Percent Splice Strand
CG13653-RA 1..708 34..741 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:26:48 Download gff for RT07379.complete
Subject Subject Range Query Range Percent Splice Strand
CG13653-RA 1..708 34..741 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:18:28 Download gff for RT07379.complete
Subject Subject Range Query Range Percent Splice Strand
CG13653-RA 1..708 34..741 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-27 10:50:45 Download gff for RT07379.complete
Subject Subject Range Query Range Percent Splice Strand
CG13653-RA 1..708 34..741 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:24:17 Download gff for RT07379.complete
Subject Subject Range Query Range Percent Splice Strand
CG13653-RA 1..708 34..741 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:26:48 Download gff for RT07379.complete
Subject Subject Range Query Range Percent Splice Strand
CG13653-RA 1..937 1..937 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:18:28 Download gff for RT07379.complete
Subject Subject Range Query Range Percent Splice Strand
CG13653-RA 1..937 1..937 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:06:26 Download gff for RT07379.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25195527..25195719 1..193 100 -> Plus
3R 25195788..25196531 194..937 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:06:26 Download gff for RT07379.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25195527..25195719 1..193 100 -> Plus
3R 25195788..25196531 194..937 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:06:26 Download gff for RT07379.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25195527..25195719 1..193 100 -> Plus
3R 25195788..25196531 194..937 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:26:48 Download gff for RT07379.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21021249..21021441 1..193 100 -> Plus
arm_3R 21021510..21022253 194..937 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:56:19 Download gff for RT07379.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24936619..24937362 194..937 100   Plus
3R 24936358..24936550 1..193 100 -> Plus

RT07379.hyp Sequence

Translation from 0 to 740

> RT07379.hyp
HNHRTKHIDLKMQLGKAIILILLAAIQQSCLALYIKSAEKNPAKTGPKDD
WGVFKNTLGLSQEKVELLKSQKDQQGTKELLNRFILENPKALPKAKPQPD
QFMGLYRSILKKLTASKRMLKTSLNFELADRPHKTLKRPRRKIAVKMVSD
MPSWKIESLLNSFYLKHGIPRNAEEHDYPDLDMARDTDYESDNFYDDEGD
VGLTAKTRQNTEYGSFQDLIMQAKMNEWERESEETKLHGPDNDDYI*

RT07379.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13653-PA 235 CG13653-PA 1..235 12..246 1223 100 Plus

RT07379.pep Sequence

Translation from 0 to 740

> RT07379.pep
HNHRTKHIDLKMQLGKAIILILLAAIQQSCLALYIKSAEKNPAKTGPKDD
WGVFKNTLGLSQEKVELLKSQKDQQGTKELLNRFILENPKALPKAKPQPD
QFMGLYRSILKKLTASKRMLKTSLNFELADRPHKTLKRPRRKIAVKMVSD
MPSWKIESLLNSFYLKHGIPRNAEEHDYPDLDMARDTDYESDNFYDDEGD
VGLTAKTRQNTEYGSFQDLIMQAKMNEWERESEETKLHGPDNDDYI*

RT07379.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17897-PA 244 GF17897-PA 1..244 12..246 903 74 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11372-PA 234 GG11372-PA 1..234 12..246 1197 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19570-PA 272 GH19570-PA 1..272 12..246 617 51.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13653-PA 235 CG13653-PA 1..235 12..246 1223 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23867-PA 270 GI23867-PA 43..270 49..246 522 50.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21911-PA 255 GL21911-PA 4..255 17..246 721 59.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27976-PA 249 GA27976-PA 4..249 17..246 736 61.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17815-PA 235 GM17815-PA 1..235 12..246 1235 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21184-PA 235 GD21184-PA 1..235 12..246 1227 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23605-PA 262 GJ23605-PA 1..262 12..246 658 50.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13893-PA 249 GK13893-PA 7..249 17..246 686 58.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23569-PA 236 GE23569-PA 1..236 12..246 1075 92.4 Plus