Clone RT07487 Report

Search the DGRC for RT07487

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:74
Well:87
Vector:pCR2.1
Associated Gene/TranscriptCG17147-RA
Protein status:RT07487.pep: wuzgold
Sequenced Size:1017

Clone Sequence Records

RT07487.complete Sequence

1017 bp assembled on 2010-04-23

GenBank Submission: BT124789.1

> RT07487.complete
ATGACTCCTAACCTCAAACTTGGAGTGCTTCTCGGATGCGTTCTCTTGTT
GGCTACCGTAGCTCTTTCGGCGAGTGTCGGTGAATACGAGGAGCTGTGTC
GCCTTTTCAAGAACGGGACCAAGGTTCGCAAGCCCGGCACCTGCGACCAG
TACATTCAGTGCTACGATGGCAACGGCACCGTCCTGACCTGCCCCTCCAA
CCAGTCCTTCAATCCCAGCAAGGGTAGTTGCGTGGACACGTTGGCCAACA
GCAACAAGTACTGCGGCAATCGCTGCGAGGGATTGGATGGCGAATGGGTG
GCCGATCCGACCGAGTGCCACAAGTACTTCTACTGCATGAACGGCGTACC
GCTGGCGGGGATGTGTCCCGTAGGCCAGCACTTCGATGAGCGCTCTCAGT
CCTGCCTGTACGGCGTGGACTCCATGTGCGTGGATGTGAACAACATTTGC
GAGCTGGTGGCGGAAAATACGAAGTTCCGGAATGAGAAGGACTGCGCCTA
CTACTATGAGTGTGACAAGACCGGTAACCATGCGTCCAAGAGCTGCACTG
TCACCTCCAAGAAGCGCGAGTATTTCGATGTGGAGAGCGGCAATTGCGTG
GAAGCCAATAAGGTGGAGTGCACCGCCCATTCGAAGGAGAACGTCTGCAC
CAGCAGCACAACAATGACATTCAAATCCGACCAAGCCACCTGCCGTGGAT
ACTTCGTATGCAAGGCCCTCTATCCCGTCGCCGACCTGGATCCACTGTGG
ACGCAGTGCCCCGAGGGCTACTTCTTCGACGAGGATCGGCAGCTCTGCGC
CAATCCCACCACAGTGGTGTGCACCCACAACAGATGCGACGGACGCGGCA
CGATGCTGGTGACCAGCAGCAGCAATAACTGTCACAACTACATCCGGTGT
GTGGACAACAAGGAGGTGACGGAGGAAACCTGCCACTGGGATCACTTCTT
CGACGAGACAGTGGAAGCGTGCTCCTCCAAGATCATCTACGATAAGTGTT
GCGATGGCCGGGACTAA

RT07487.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17147-RA 1017 CG17147-RA 1..1017 1..1017 5085 100 Plus
CG17147.a 1177 CG17147.a 131..1138 10..1017 5040 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20213458..20214462 11..1015 5010 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20224287..20225293 11..1017 5035 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20217387..20218393 11..1017 5035 100 Plus
Blast to na_te.dros performed 2019-03-15 23:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1507..1588 806..895 117 63.3 Plus

RT07487.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:31:43 Download gff for RT07487.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20213447..20214464 1..1017 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-23 14:37:52 Download gff for RT07487.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-3-RA 1..1015 1..1015 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-17 17:08:34 Download gff for RT07487.complete
Subject Subject Range Query Range Percent Splice Strand
CG17147-RA 1..1017 1..1017 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:06:01 Download gff for RT07487.complete
Subject Subject Range Query Range Percent Splice Strand
CG17147-RB 2..1014 6..1017 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:24 Download gff for RT07487.complete
Subject Subject Range Query Range Percent Splice Strand
CG17147-RB 2..1014 6..1017 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-23 14:37:52 Download gff for RT07487.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-3-RA 1..1015 1..1015 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-17 17:08:34 Download gff for RT07487.complete
Subject Subject Range Query Range Percent Splice Strand
CG17147-RA 1..1017 1..1017 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:06:01 Download gff for RT07487.complete
Subject Subject Range Query Range Percent Splice Strand
CG17147-RB 92..1105 1..1017 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:24 Download gff for RT07487.complete
Subject Subject Range Query Range Percent Splice Strand
CG17147-RB 92..1105 1..1017 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:31:43 Download gff for RT07487.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20224276..20225293 1..1017 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:31:43 Download gff for RT07487.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20224276..20225293 1..1017 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:31:43 Download gff for RT07487.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20224276..20225293 1..1017 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:01 Download gff for RT07487.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20217376..20218393 1..1017 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:13:26 Download gff for RT07487.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20217376..20218393 1..1017 99   Plus

RT07487.pep Sequence

Translation from 0 to 1016

> RT07487.pep
MTPNLKLGVLLGCVLLLATVALSASVGEYEELCRLFKNGTKVRKPGTCDQ
YIQCYDGNGTVLTCPSNQSFNPSKGSCVDTLANSNKYCGNRCEGLDGEWV
ADPTECHKYFYCMNGVPLAGMCPVGQHFDERSQSCLYGVDSMCVDVNNIC
ELVAENTKFRNEKDCAYYYECDKTGNHASKSCTVTSKKREYFDVESGNCV
EANKVECTAHSKENVCTSSTTMTFKSDQATCRGYFVCKALYPVADLDPLW
TQCPEGYFFDEDRQLCANPTTVVCTHNRCDGRGTMLVTSSSNNCHNYIRC
VDNKEVTEETCHWDHFFDETVEACSSKIIYDKCCDGRD*

RT07487.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25314-PA 336 GF25314-PA 1..336 1..338 1277 69.5 Plus
Dana\GF24498-PA 340 GF24498-PA 2..332 3..328 458 32.3 Plus
Dana\GF25313-PA 317 GF25313-PA 30..310 30..328 329 32.2 Plus
Dana\GF25312-PA 347 GF25312-PA 4..331 6..334 294 27.7 Plus
Dana\GF24479-PA 366 GF24479-PA 13..347 15..325 294 28.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16088-PA 336 GG16088-PA 17..335 18..337 1459 83.8 Plus
Dere\GG13869-PA 322 GG13869-PA 11..320 26..333 439 34.5 Plus
Dere\GG16087-PA 333 GG16087-PA 27..326 30..328 429 35.2 Plus
Dere\GG16084-PA 352 GG16084-PA 11..326 15..329 291 28.1 Plus
Dere\GG13335-PA 365 GG13335-PA 1..336 1..326 258 28.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16338-PA 304 GH16338-PA 1..304 32..338 907 57.9 Plus
Dgri\GH14443-PA 346 GH14443-PA 15..345 14..334 473 35 Plus
Dgri\GH11417-PA 302 GH11417-PA 1..297 35..329 397 33.9 Plus
Dgri\GH15115-PA 336 GH15115-PA 11..325 31..325 267 26.2 Plus
Dgri\GH15114-PA 309 GH15114-PA 2..293 30..324 226 26.2 Plus
Dgri\GH15114-PA 309 GH15114-PA 122..294 32..200 167 32.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17147-PB 337 CG17147-PB 3..337 4..338 1885 100 Plus
CG17145-PB 334 CG17145-PB 3..332 6..333 556 35.9 Plus
CG17145-PA 334 CG17145-PA 3..332 6..333 556 35.9 Plus
CG5883-PA 339 CG5883-PA 13..337 15..333 509 34.6 Plus
CG6996-PC 364 CG6996-PC 28..331 32..334 340 28.9 Plus
CG6996-PB 364 CG6996-PB 28..331 32..334 340 28.9 Plus
CG7017-PB 359 CG7017-PB 10..357 15..334 310 26.4 Plus
CG7017-PA 359 CG7017-PA 10..357 15..334 310 26.4 Plus
CG7298-PA 369 CG7298-PA 1..336 1..326 309 27.2 Plus
CG7290-PB 419 CG7290-PB 5..330 6..324 304 25.4 Plus
CG7290-PA 419 CG7290-PA 5..330 6..324 304 25.4 Plus
CG5897-PC 343 CG5897-PC 11..339 13..334 298 24.9 Plus
CG6933-PE 351 CG6933-PE 5..339 4..328 254 24.5 Plus
CG6933-PB 351 CG6933-PB 5..339 4..328 254 24.5 Plus
CG6933-PA 351 CG6933-PA 5..339 4..328 254 24.5 Plus
CG6933-PD 363 CG6933-PD 17..351 4..328 254 24.5 Plus
CG6933-PC 363 CG6933-PC 17..351 4..328 254 24.5 Plus
CG31077-PB 988 CG31077-PB 178..472 26..324 244 24.5 Plus
CG17826-PA 751 CG17826-PA 84..336 38..324 237 26.5 Plus
CG31077-PB 988 CG31077-PB 48..301 48..324 232 26.5 Plus
CG43896-PB 1324 CG43896-PB 149..461 29..324 232 26.2 Plus
CG43896-PD 2113 CG43896-PD 149..461 29..324 232 26.2 Plus
CG43896-PC 2113 CG43896-PC 149..461 29..324 232 26.2 Plus
CG43896-PB 1324 CG43896-PB 5..334 10..324 206 22.4 Plus
CG43896-PD 2113 CG43896-PD 5..334 10..324 206 22.4 Plus
CG43896-PC 2113 CG43896-PC 5..334 10..324 206 22.4 Plus
CG43896-PB 1324 CG43896-PB 543..819 32..334 205 24.3 Plus
CG43896-PD 2113 CG43896-PD 543..819 32..334 205 24.3 Plus
CG43896-PC 2113 CG43896-PC 543..819 32..334 205 24.3 Plus
CG17826-PA 751 CG17826-PA 280..548 20..324 201 25.7 Plus
CG31077-PB 988 CG31077-PB 59..369 19..337 200 24 Plus
CG17826-PA 751 CG17826-PA 388..664 22..324 200 25.9 Plus
CG17826-PA 751 CG17826-PA 176..442 22..324 196 25.6 Plus
CG43896-PD 2113 CG43896-PD 1632..1950 38..338 193 26.3 Plus
CG43896-PC 2113 CG43896-PC 1632..1950 38..338 193 26.3 Plus
CG17826-PA 751 CG17826-PA 41..285 48..324 187 23.6 Plus
CG31077-PB 988 CG31077-PB 644..970 35..324 180 20.9 Plus
CG43896-PB 1324 CG43896-PB 290..575 33..311 177 24.3 Plus
CG43896-PD 2113 CG43896-PD 290..575 33..311 177 24.3 Plus
CG43896-PC 2113 CG43896-PC 290..575 33..311 177 24.3 Plus
obst-J-PA 353 CG7348-PA 97..273 43..213 175 26.1 Plus
CG31077-PB 988 CG31077-PB 38..246 96..325 172 24.5 Plus
obst-J-PA 353 CG7348-PA 6..260 9..267 170 22.1 Plus
CG7252-PA 474 CG7252-PA 179..467 37..327 170 24.9 Plus
Muc68D-PB 1514 CG6004-PB 1314..1514 33..208 170 26.2 Plus
obst-J-PA 353 CG7348-PA 45..260 106..325 161 26.5 Plus
CG43896-PB 1324 CG43896-PB 42..215 164..338 159 25.1 Plus
CG43896-PD 2113 CG43896-PD 42..215 164..338 159 25.1 Plus
CG43896-PC 2113 CG43896-PC 42..215 164..338 159 25.1 Plus
CG43896-PD 2113 CG43896-PD 1147..1417 47..324 158 23.9 Plus
CG43896-PC 2113 CG43896-PC 1147..1417 47..324 158 23.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11529-PA 334 GI11529-PA 1..334 1..338 992 55.6 Plus
Dmoj\GI14568-PA 335 GI14568-PA 4..335 7..333 445 34.1 Plus
Dmoj\GI13577-PA 353 GI13577-PA 32..344 30..338 400 31.8 Plus
Dmoj\GI13766-PA 360 GI13766-PA 34..349 31..325 255 27.5 Plus
Dmoj\GI11528-PA 316 GI11528-PA 1..290 42..329 252 28.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25120-PA 338 GL25120-PA 8..332 8..335 1106 63 Plus
Dper\GL25119-PA 336 GL25119-PA 7..331 4..329 504 36.4 Plus
Dper\GL25071-PA 337 GL25071-PA 30..329 30..328 382 30.8 Plus
Dper\GL25118-PA 371 GL25118-PA 1..324 5..329 285 25.4 Plus
Dper\GL25052-PA 381 GL25052-PA 13..330 5..326 266 29.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23689-PA 338 GA23689-PA 9..332 9..335 1103 62.9 Plus
Dpse\GA14346-PA 336 GA14346-PA 7..331 4..329 508 36.4 Plus
Dpse\GA19200-PA 337 GA19200-PA 30..329 30..328 384 30.8 Plus
Dpse\GA20015-PA 369 GA20015-PA 1..324 5..329 290 25.7 Plus
Dpse\GA23596-PA 381 GA23596-PA 13..330 5..326 258 29.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22261-PA 338 GM22261-PA 3..338 4..338 1674 93.5 Plus
Dsec\GM24691-PA 340 GM24691-PA 8..338 9..333 451 33.8 Plus
Dsec\GM22260-PA 341 GM22260-PA 23..333 19..328 449 35.2 Plus
Dsec\GM22259-PA 360 GM22259-PA 11..326 15..329 281 27.3 Plus
Dsec\GM22242-PA 368 GM22242-PA 1..336 1..326 265 27.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14860-PA 338 GD14860-PA 3..338 4..338 1685 93.8 Plus
Dsim\GD14859-PA 334 GD14859-PA 3..326 6..328 473 35.3 Plus
Dsim\GD12761-PA 340 GD12761-PA 4..338 5..333 448 32.8 Plus
Dsim\GD14858-PA 358 GD14858-PA 11..326 15..329 286 26.5 Plus
Dsim\GD12764-PA 415 GD12764-PA 79..411 8..334 267 26.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11548-PA 334 GJ11548-PA 1..334 1..338 1048 58.1 Plus
Dvir\GJ17080-PA 329 GJ17080-PA 25..324 30..329 439 34.4 Plus
Dvir\GJ13911-PA 355 GJ13911-PA 34..346 30..338 404 33 Plus
Dvir\GJ13756-PA 477 GJ13756-PA 124..466 14..325 280 27.3 Plus
Dvir\GJ11547-PA 349 GJ11547-PA 24..331 24..329 268 26.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16942-PA 338 GK16942-PA 7..338 7..338 1062 61.6 Plus
Dwil\GK13618-PA 345 GK13618-PA 12..334 14..328 486 37.5 Plus
Dwil\GK16941-PA 323 GK16941-PA 7..323 19..333 483 36.4 Plus
Dwil\GK16940-PA 338 GK16940-PA 1..297 42..335 260 26.8 Plus
Dwil\GK17243-PA 721 GK17243-PA 372..711 15..326 234 26.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19650-PA 336 GE19650-PA 17..336 18..338 1480 85.4 Plus
Dyak\GE23067-PA 117 GE23067-PA 1..117 222..338 552 86.3 Plus
Dyak\GE19649-PA 334 GE19649-PA 6..326 9..328 434 35.1 Plus
Dyak\GE20161-PA 323 GE20161-PA 15..321 30..333 402 33.9 Plus
Dyak\GE19648-PA 358 GE19648-PA 11..326 15..329 289 27.4 Plus

RT07487.hyp Sequence

Translation from 0 to 1014

> RT07487.hyp
SFVDLKLGVLLGCVLLLATVALSASVGEYEELCRLFKNGTKVRKPGTCDQ
YIQCYDGNGTVLTCPSNQSFNPSKGSCVDTLANSNKYCGNRCEGLDGEWV
ADPTECHKYFYCMNGVPLAGMCPVGQHFDERSQSCLYGVDSMCVDVNNIC
ELVAENTKFRNEKDCAYYYECDKTGNHASKSCTVTSKKREYFDVESGNCV
EANKVECTAHSKENVCTSSTTMTFKSDQATCRGYFVCKALYPVADLDPLW
TQCPEGYFFDEDRQLCANPTTVVCTHNRCDGRGTMLVTSSSNNCHNYIRC
VDNKEVTEETCHWDHFFDETVEACSSKIIYDKCCDGRD

RT07487.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17147-PB 337 CG17147-PB 2..337 3..338 1881 99.4 Plus
CG17145-PB 334 CG17145-PB 3..332 6..333 556 35.9 Plus
CG17145-PA 334 CG17145-PA 3..332 6..333 556 35.9 Plus
CG5883-PA 339 CG5883-PA 13..337 15..333 509 34.6 Plus
CG6996-PC 364 CG6996-PC 1..331 3..334 344 28.2 Plus