Clone Sequence Records
RT07515.complete Sequence
381 bp assembled on 2011-07-27
GenBank Submission: BT124786.2
> RT07515.complete
ATGAAATTGAGCTACACCTGTGGCGCCCCAGCGGATTCAGGGGCTCCCAC
TTTGAACGAGGCAAAGCCAGATGATTCCGATGAGTCCGTAGAGACCTCTC
CACCGACCTACTGGAACAGTGGGTATTGGATAACGACCACACCGCTGCCG
CCGATCACCAACTTGCCGGGTGCGGACAAGGAGGTCCTGTGCCAATTTCT
GGGTTTCTTCGAGGCATTTAGAATGCTACTCTTCACGCTTCTCTGGGGCG
CTAACATGGAGTTCTGTCCAACGCGGAGAAGCACGTCGCCAGCGAGCTTC
GAGAGGAAATTGAAAGGCAGCGCAACTCATCCTCGGACCGCAAGTACATG
GAAATGGACCCAACGCAAGCGAACGCAATAG
RT07515.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 16:46:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14673-RA | 381 | CG14673-RA | 1..380 | 1..380 | 1900 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 1452152..1452524 | 381..9 | 1865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:50:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5626494..5626866 | 381..9 | 1865 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:13:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 5367325..5367697 | 381..9 | 1865 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-15 10:50:31 has no hits.
RT07515.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:51:36 Download gff for
RT07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 1452152..1452524 | 9..381 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-23 14:37:48 Download gff for
RT07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14673-RA | 1..379 | 1..379 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-07-27 09:25:26 Download gff for
RT07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14673-RA | 1..381 | 1..381 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-23 14:37:47 Download gff for
RT07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14673-RA | 1..379 | 1..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-27 09:25:25 Download gff for
RT07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14673-RA | 1..381 | 1..381 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:36 Download gff for
RT07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5626494..5626866 | 9..381 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:36 Download gff for
RT07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5626494..5626866 | 9..381 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:36 Download gff for
RT07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5626494..5626866 | 9..381 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:26:24 Download gff for
RT07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1452216..1452588 | 9..381 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:26:24 Download gff for
RT07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1452216..1452588 | 9..381 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:26:24 Download gff for
RT07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1452216..1452588 | 9..381 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:09:54 Download gff for
RT07515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5367325..5367697 | 9..381 | 100 | | Minus |
RT07515.pep Sequence
Translation from 0 to 380
> RT07515.pep
MKLSYTCGAPADSGAPTLNEAKPDDSDESVETSPPTYWNSGYWITTTPLP
PITNLPGADKEVLCQFLGFFEAFRMLLFTLLWGANMEFCPTRRSTSPASF
ERKLKGSATHPRTASTWKWTQRKRTQ*
RT07515.pep Blast Records
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM10609-PA | 238 | GM10609-PA | 12..119 | 3..114 | 375 | 63.4 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD19597-PA | 238 | GD19597-PA | 12..119 | 3..114 | 376 | 63.4 | Plus |
RT07515.hyp Sequence
Translation from 9 to 378
> RT07515.hyp
SYTCGAPADSGAPTLNEAKPDDSDESVETSPPTYWNSGYWITTTPLPPIT
NLPGADKEVLCQFLGFFEAFRMLLFTLLWGANMEFCPTRRSTSPASFERK
LKGSATHPRTASTWKWTQRKRTQ
Sequence RT07515.hyp has no blast hits.
RT07515.hyp2 Sequence
Translation from 9 to 380
> RT07515.hyp2
SYTCGAPADSGAPTLNEAKPDDSDESVETSPPTYWNSGYWITTTPLPPIT
NLPGADKEVLCQFLGFFEAFRMLLFTLLWGANMEFCPTRRSTSPASFERK
LKGSATHPRTASTWKWTQRKRTQ*
Sequence RT07515.hyp2 has no blast hits.