Clone RT07682 Report

Search the DGRC for RT07682

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:76
Well:82
Vector:pCR2.1
Associated Gene/TranscriptCG33965-RA
Protein status:RT07682.pep: gold
Sequenced Size:954

Clone Sequence Records

RT07682.complete Sequence

954 bp assembled on 2010-04-26

GenBank Submission: BT124798.1

> RT07682.complete
ATGAGTGGAAGTTCTCCCAATTCCATAAGGCCTCTGCCGCCGGGTCTGCA
AAAAGTGGCCATCGAAGAGCTGAACGAAGTGCCAAGTCGTGTGGAATCGG
ACATTGCTGCTCTGAAAGAATGGCTACAGAAGCAGCCCCATCTCTGCGCC
TGTCTCGAGGATCAGTTCCTGCTTAGTTTTCTTAGGGGATCGAAGTTTAG
TCTGGAGAAGGCCAAGCAGAAGATTGATCGATTCTATAGCCTGCAAGCGG
TCATTCCGGAGGTTTTCAACGATCAGCGATTGGTTGACAATGCCCAGGTG
TTGGAAATTATTCGACTGGGAGTGATCTTGCGCATTCCCCTCGATGAGGA
GGATACTGGACCAGCCGTGACTATTATTCGAGCTGGCTCCTACGACATCA
ATAAATTCAAGTTCCAGGACATCATACGTGTGGGCTCCATGTTCGGTGAG
ATCATGATGCTGGAGGATGACAATGCCTCCGTCAGTGGCTACCTGGAGAT
CATGGACATGAGTGGAGTGACGGGTGCAAATCTGTTTGCCCTCCAACCCC
AACTTCTCAGCAAATTCTCGGCCTATGCGGACGAGGCTATGCCAACGCGT
CAGAAGGGAATCCATTTCATCAATGTGCCCAAGGCATTCGAGACGGGTTT
TAAATCACTGCTTGGATGGTTTCCGGGAAAAATCAAGGAGAGGGTTTCCG
TTAGCTCCGATCCGGAAGCTATTTTCGAGCGAGTTCCTAAGCACTATCTT
CCTGAGGAGTACGGTGGCTCAAAGGGCACCATGAAGGATATCACCGACCA
GATGGAGGCAAAGCTCTGTAGCTATCGCAGCTACTTTGAGGACTGTCAGC
ATTTCGGAGCCCATGACAAGTTGCGCGAGGAAGCCTCAGTGCTGAACCCA
GACGAGAGTCACTTTGGCGTGGATGGCTCTTTTCGCCAGTTGGTCATCGA
CTGA

RT07682.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG33965-RA 1212 CG33965-RA 150..1103 1..954 4770 100 Plus
CG31636-RA 1612 CG31636-RA 588..1021 193..626 610 76 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1232798..1233173 320..695 1805 98.7 Plus
chr3L 24539361 chr3L 1232420..1232739 1..320 1525 98.4 Plus
chr3L 24539361 chr3L 1233226..1233486 693..953 1290 99.6 Plus
chr2L 23010047 chr2L 6656127..6656386 626..367 505 79.6 Minus
chr2L 23010047 chr2L 6656506..6656712 305..99 195 72.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1233276..1233651 320..695 1880 100 Plus
3L 28110227 3L 1232904..1233223 1..320 1600 100 Plus
3L 28110227 3L 1233704..1233965 693..954 1310 100 Plus
2L 23513712 2L 6657070..6657329 626..367 505 79.6 Minus
2L 23513712 2L 6657449..6657655 305..99 195 72.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1233276..1233651 320..695 1880 100 Plus
3L 28103327 3L 1232904..1233223 1..320 1600 100 Plus
3L 28103327 3L 1233704..1233965 693..954 1310 100 Plus
2L 23513712 2L 6657070..6657329 626..367 505 79.6 Minus
Blast to na_te.dros performed on 2019-03-16 08:08:25 has no hits.

RT07682.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:09:29 Download gff for RT07682.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1232420..1232739 1..320 98 -> Plus
chr3L 1232799..1233171 321..693 98 -> Plus
chr3L 1233227..1233486 694..953 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-26 13:53:09 Download gff for RT07682.complete
Subject Subject Range Query Range Percent Splice Strand
CG33965-RA 1..953 1..953 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:30:31 Download gff for RT07682.complete
Subject Subject Range Query Range Percent Splice Strand
CG33965-RA 1..953 1..953 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:41:50 Download gff for RT07682.complete
Subject Subject Range Query Range Percent Splice Strand
CG33965-RA 1..954 1..954 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:35:20 Download gff for RT07682.complete
Subject Subject Range Query Range Percent Splice Strand
CG33965-RA 1..954 1..954 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-26 13:53:08 Download gff for RT07682.complete
Subject Subject Range Query Range Percent Splice Strand
CG33965-RA 1..953 1..953 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:30:31 Download gff for RT07682.complete
Subject Subject Range Query Range Percent Splice Strand
CG33965-RA 1..953 1..953 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:41:50 Download gff for RT07682.complete
Subject Subject Range Query Range Percent Splice Strand
CG33965-RA 23..975 1..953 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:35:20 Download gff for RT07682.complete
Subject Subject Range Query Range Percent Splice Strand
CG33965-RA 23..975 1..953 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:09:29 Download gff for RT07682.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1232904..1233223 1..320 100 -> Plus
3L 1233277..1233649 321..693 100 -> Plus
3L 1233705..1233964 694..953 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:09:29 Download gff for RT07682.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1232904..1233223 1..320 100 -> Plus
3L 1233277..1233649 321..693 100 -> Plus
3L 1233705..1233964 694..953 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:09:29 Download gff for RT07682.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1232904..1233223 1..320 100 -> Plus
3L 1233277..1233649 321..693 100 -> Plus
3L 1233705..1233964 694..953 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:41:50 Download gff for RT07682.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1232904..1233223 1..320 100 -> Plus
arm_3L 1233277..1233649 321..693 100 -> Plus
arm_3L 1233705..1233964 694..953 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:15:42 Download gff for RT07682.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1232904..1233223 1..320 100 -> Plus
3L 1233705..1233964 694..953 100   Plus
3L 1233277..1233649 321..693 100 -> Plus

RT07682.pep Sequence

Translation from 0 to 953

> RT07682.pep
MSGSSPNSIRPLPPGLQKVAIEELNEVPSRVESDIAALKEWLQKQPHLCA
CLEDQFLLSFLRGSKFSLEKAKQKIDRFYSLQAVIPEVFNDQRLVDNAQV
LEIIRLGVILRIPLDEEDTGPAVTIIRAGSYDINKFKFQDIIRVGSMFGE
IMMLEDDNASVSGYLEIMDMSGVTGANLFALQPQLLSKFSAYADEAMPTR
QKGIHFINVPKAFETGFKSLLGWFPGKIKERVSVSSDPEAIFERVPKHYL
PEEYGGSKGTMKDITDQMEAKLCSYRSYFEDCQHFGAHDKLREEASVLNP
DESHFGVDGSFRQLVID*

RT07682.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24440-PA 318 GF24440-PA 2..318 1..317 1431 82.3 Plus
Dana\GF15442-PA 313 GF15442-PA 4..313 9..317 1166 70.3 Plus
Dana\GF24441-PA 310 GF24441-PA 3..310 8..317 696 44.7 Plus
Dana\GF12489-PA 311 GF12489-PA 2..311 4..317 666 42.7 Plus
Dana\GF12490-PA 308 GF12490-PA 4..308 9..317 614 40.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14765-PA 317 GG14765-PA 1..317 1..317 1575 93.1 Plus
Dere\GG23602-PA 313 GG23602-PA 2..313 7..317 1144 67.9 Plus
Dere\GG14766-PA 324 GG14766-PA 17..324 8..317 676 42.8 Plus
Dere\GG25270-PA 313 GG25270-PA 1..313 1..317 670 42 Plus
Dere\GG15223-PA 311 GG15223-PA 5..311 9..317 614 40.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15438-PA 318 GH15438-PA 1..318 1..317 1282 74.8 Plus
Dgri\GH13581-PA 314 GH13581-PA 6..314 9..317 1132 67.3 Plus
Dgri\GH14848-PA 311 GH14848-PA 4..311 9..317 645 40.3 Plus
Dgri\GH22856-PA 316 GH22856-PA 11..316 8..317 638 40.3 Plus
Dgri\GH15199-PA 308 GH15199-PA 2..308 6..317 609 40.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG33965-PA 317 CG33965-PA 1..317 1..317 1633 100 Plus
CG31636-PB 313 CG31636-PB 2..313 7..317 1088 67.3 Plus
CG31636-PA 313 CG31636-PA 2..313 7..317 1088 67.3 Plus
CG33966-PA 310 CG33966-PA 3..310 8..317 671 43.4 Plus
CG12926-PA 313 CG12926-PA 1..313 1..317 660 42 Plus
CG33514-PA 311 CG33514-PA 5..311 9..317 609 41 Plus
CG30339-PA 308 CG30339-PA 3..308 8..317 604 41.6 Plus
CG10301-PB 306 CG10301-PB 3..303 10..314 474 34.4 Plus
CG2663-PC 308 CG2663-PC 4..308 9..317 420 32.7 Plus
CG2663-PA 308 CG2663-PA 4..308 9..317 420 32.7 Plus
CG10300-PA 311 CG10300-PA 3..311 7..317 411 32.4 Plus
CG1902-PC 312 CG1902-PC 4..312 9..317 359 29.1 Plus
CG1902-PA 312 CG1902-PA 4..312 9..317 359 29.1 Plus
CG10657-PA 334 CG10657-PA 31..334 12..317 295 28.7 Plus
Cralbp-PA 324 CG10546-PA 11..324 12..317 230 24.8 Plus
pinta-PB 273 CG13848-PB 19..239 28..256 225 28.4 Plus
pinta-PA 273 CG13848-PA 19..239 28..256 225 28.4 Plus
CG3823-PA 295 CG3823-PA 17..295 35..317 213 25.2 Plus
CG10237-PD 301 CG10237-PD 30..301 17..290 208 22.7 Plus
CG10237-PA 301 CG10237-PA 30..301 17..290 208 22.7 Plus
CG10237-PE 306 CG10237-PE 35..306 17..290 208 22.7 Plus
CG10237-PC 306 CG10237-PC 35..306 17..290 208 22.7 Plus
CG10237-PB 324 CG10237-PB 53..324 17..290 208 22.7 Plus
CG11550-PA 298 CG11550-PA 20..298 34..317 195 20.8 Plus
CG5973-PF 311 CG5973-PF 32..273 13..257 175 21.5 Plus
CG5973-PE 311 CG5973-PE 32..273 13..257 175 21.5 Plus
CG5973-PG 311 CG5973-PG 32..273 13..257 175 21.5 Plus
CG5973-PD 311 CG5973-PD 32..273 13..257 175 21.5 Plus
CG5973-PC 311 CG5973-PC 32..273 13..257 175 21.5 Plus
CG5973-PB 311 CG5973-PB 32..273 13..257 175 21.5 Plus
CG5973-PA 311 CG5973-PA 32..273 13..257 175 21.5 Plus
CG5958-PA 294 CG5958-PA 18..261 12..257 167 26.2 Plus
CG3091-PC 303 CG3091-PC 8..286 18..281 167 21.6 Plus
CG3091-PA 303 CG3091-PA 8..286 18..281 167 21.6 Plus
CG10026-PD 290 CG10026-PD 15..286 12..286 159 22.1 Plus
CG10026-PC 290 CG10026-PC 15..286 12..286 159 22.1 Plus
CG10026-PA 290 CG10026-PA 15..286 12..286 159 22.1 Plus
CG10026-PB 299 CG10026-PB 24..295 12..286 159 22.1 Plus
CG3191-PC 309 CG3191-PC 35..292 32..285 159 21.9 Plus
CG3191-PA 309 CG3191-PA 35..292 32..285 159 21.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13038-PA 318 GI13038-PA 10..318 9..317 1256 76.1 Plus
Dmoj\GI24205-PA 314 GI24205-PA 6..314 9..317 1082 64.4 Plus
Dmoj\GI21233-PA 313 GI21233-PA 1..313 1..317 634 40.1 Plus
Dmoj\GI13701-PA 312 GI13701-PA 5..312 9..317 621 43.2 Plus
Dmoj\GI16717-PA 308 GI16717-PA 5..308 9..317 598 40.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16161-PA 313 GL16161-PA 4..313 9..317 1349 81 Plus
Dper\GL26205-PA 313 GL26205-PA 2..313 7..317 1149 67.3 Plus
Dper\GL16163-PA 311 GL16163-PA 2..311 6..317 687 42.8 Plus
Dper\GL17330-PA 311 GL17330-PA 2..311 4..317 669 42.7 Plus
Dper\GL17331-PA 308 GL17331-PA 4..308 9..317 613 41.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28410-PA 313 GA28410-PA 4..313 9..317 1353 81.3 Plus
Dpse\GA16352-PA 313 GA16352-PA 2..313 7..317 1149 67.3 Plus
Dpse\GA28411-PA 311 GA28411-PA 2..311 6..317 687 42.8 Plus
Dpse\GA11913-PA 311 GA11913-PA 2..311 4..317 666 42.7 Plus
Dpse\GA15770-PA 308 GA15770-PA 4..308 9..317 618 41.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14385-PA 317 GM14385-PA 1..317 1..317 1621 95.9 Plus
Dsec\GM13594-PA 274 GM13594-PA 3..274 46..317 1344 93.4 Plus
Dsec\GM14034-PA 313 GM14034-PA 2..313 7..317 1129 67.6 Plus
Dsec\GM20588-PA 313 GM20588-PA 1..313 1..317 662 41.6 Plus
Dsec\GM14386-PA 290 GM14386-PA 3..290 8..317 627 41.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22558-PA 313 GD22558-PA 2..313 7..317 1127 67.6 Plus
Dsim\GD13840-PA 311 GD13840-PA 5..311 9..317 621 41 Plus
Dsim\GD10061-PA 308 GD10061-PA 3..308 8..317 605 41.9 Plus
Dsim\GD21031-PA 306 GD21031-PA 3..306 10..317 490 34.4 Plus
Dsim\GD10059-PA 212 GD10059-PA 1..177 1..179 425 45.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12134-PA 318 GJ12134-PA 10..318 9..317 1347 79.9 Plus
Dvir\GJ21474-PA 314 GJ21474-PA 6..314 9..317 1105 67 Plus
Dvir\GJ12135-PA 310 GJ12135-PA 3..310 8..317 660 40.2 Plus
Dvir\GJ14041-PA 311 GJ14041-PA 4..311 9..317 630 44.5 Plus
Dvir\GJ20838-PA 316 GJ20838-PA 10..316 7..317 621 41.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21130-PA 318 GK21130-PA 3..318 4..317 1307 75.3 Plus
Dwil\GK18277-PA 317 GK18277-PA 8..317 9..317 1153 69 Plus
Dwil\GK15622-PA 313 GK15622-PA 1..313 1..317 685 42.6 Plus
Dwil\GK21135-PA 310 GK21135-PA 4..310 9..317 647 41.3 Plus
Dwil\GK15623-PA 309 GK15623-PA 5..309 9..317 614 39.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21128-PA 317 GE21128-PA 1..317 1..317 1598 94.6 Plus
Dyak\GE18422-PA 313 GE18422-PA 2..313 7..317 1130 67.3 Plus
Dyak\GE21129-PA 310 GE21129-PA 3..310 8..317 697 43.7 Plus
Dyak\GE22148-PA 313 GE22148-PA 1..313 1..317 674 42 Plus
Dyak\GE22159-PA 308 GE22159-PA 4..308 9..317 625 43.3 Plus

RT07682.hyp Sequence

Translation from 1 to 951

> RT07682.hyp
MSGSSPNSIRPLPPGLQKVAIEELNEVPSRVESDIAALKEWLQKQPHLCA
CLEDQFLLSFLRGSKFSLEKAKQKIDRFYSLQAVIPEVFNDQRLVDNAQV
LEIIRLGVILRIPLDEEDTGPAVTIIRAGSYDINKFKFQDIIRVGSMFGE
IMMLEDDNASVSGYLEIMDMSGVTGANLFALQPQLLSKFSAYADEAMPTR
QKGIHFINVPKAFETGFKSLLGWFPGKIKERVSVSSDPEAIFERVPKHYL
PEEYGGSKGTMKDITDQMEAKLCSYRSYFEDCQHFGAHDKLREEASVLNP
DESHFGVDGSFRQLVID

RT07682.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG33965-PA 317 CG33965-PA 1..317 1..317 1633 100 Plus
CG31636-PB 313 CG31636-PB 2..313 7..317 1088 67.3 Plus
CG31636-PA 313 CG31636-PA 2..313 7..317 1088 67.3 Plus
CG33966-PA 310 CG33966-PA 3..310 8..317 671 43.4 Plus
CG12926-PA 313 CG12926-PA 1..313 1..317 660 42 Plus