Clone RT07725 Report

Search the DGRC for RT07725

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:77
Well:25
Vector:pCR2.1
Associated Gene/TranscriptCG34144-RA
Protein status:RT07725.pep: wuzgold
Sequenced Size:510

Clone Sequence Records

RT07725.complete Sequence

510 bp assembled on 2010-04-26

GenBank Submission: BT124805.1

> RT07725.complete
ATGCCGGAAATACTGGATGCCATGGAAATGGAGGCGCCATCCGATGTTGT
GGACATCTCTGCGCGGGAGACAGCTGTCAACGTTATAACCATCATCGATG
CCAGCAGTATAAATAATAATAATAATAATAATAATAATAACAATAATAAT
AGCAACAGTACAACCAATAATAACCACCACAACAGCGGCGAACCGGAAAC
GGAAATCGGTGCAGTGCAGCTGCAGCAGCAGCAGCAGCAACAACAACAAC
AGCTGCATCTTCAGCCGGCTTCGAATTTCGTTGCCATTCCATTGTTGGAA
CGACGGCGTCGCAGTCACTGCCGCATCGCCCCCTTGGCGCCGATCATCTG
CATCCAGAACGGATCGCATCCGGAGGAGCTCGTCCGCTTGTCCCGCTCGC
GATCGTGCTTCCTTCGCATACGCAGGACCTTCATCAAACTTTTTGGCAAA
ATCATGGGCAGCAATAATCCCAGCGAAGCGGATCGATACGACTATTATGA
CTGTGAGTAA

RT07725.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG34144-RA 709 CG34144-RA 135..644 1..510 2550 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11189022..11189408 439..59 1810 98.4 Minus
chrX 22417052 chrX 11188485..11188553 508..440 345 100 Minus
chrX 22417052 chrX 11193773..11193830 58..1 290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11297842..11298222 439..59 1905 100 Minus
X 23542271 X 11297303..11297373 510..440 355 100 Minus
X 23542271 X 11302592..11302649 58..1 290 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11305940..11306320 439..59 1905 100 Minus
X 23527363 X 11305401..11305471 510..440 355 100 Minus
X 23527363 X 11310690..11310747 58..1 290 100 Minus
Blast to na_te.dros performed 2019-03-16 10:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2484 88..256 246 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2718..2841 145..268 195 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2298..2417 145..267 193 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2442 133..265 192 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6924 71..254 163 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2363 216..267 161 78.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6529..6583 213..265 135 74.5 Plus
TART-A 13424 TART-A 13424bp 116..158 226..268 125 76.7 Plus
TART-A 13424 TART-A 13424bp 11294..11336 226..268 125 76.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2881..2989 139..251 122 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2881..3001 148..269 121 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6438..6479 215..256 111 73.8 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2587..2697 162..271 111 59.3 Plus
BS 5142 BS BS 5142bp 2041..2078 225..262 109 76.3 Plus
TART-A 13424 TART-A 13424bp 910..937 232..259 104 85.7 Plus
TART-A 13424 TART-A 13424bp 12088..12115 232..259 104 85.7 Plus
TART-A 13424 TART-A 13424bp 12875..12935 191..250 104 65.6 Plus

RT07725.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:26:59 Download gff for RT07725.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11188483..11188553 440..510 100 <- Minus
chrX 11189022..11189408 59..439 98 <- Minus
chrX 11193773..11193830 1..58 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-26 16:56:14 Download gff for RT07725.complete
Subject Subject Range Query Range Percent Splice Strand
CG34144-RA 1..508 1..508 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-17 17:08:39 Download gff for RT07725.complete
Subject Subject Range Query Range Percent Splice Strand
CG34144-RA 1..510 1..510 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:41:22 Download gff for RT07725.complete
Subject Subject Range Query Range Percent Splice Strand
CG44422-RE 1..510 1..510 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:40 Download gff for RT07725.complete
Subject Subject Range Query Range Percent Splice Strand
CG44422-RE 1..510 1..510 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-26 16:56:13 Download gff for RT07725.complete
Subject Subject Range Query Range Percent Splice Strand
CG34144-RA 1..508 1..508 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-17 17:08:39 Download gff for RT07725.complete
Subject Subject Range Query Range Percent Splice Strand
CG34144-RA 1..510 1..510 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:22 Download gff for RT07725.complete
Subject Subject Range Query Range Percent Splice Strand
CG44422-RE 135..644 1..510 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:40 Download gff for RT07725.complete
Subject Subject Range Query Range Percent Splice Strand
CG44422-RE 135..644 1..510 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:26:59 Download gff for RT07725.complete
Subject Subject Range Query Range Percent Splice Strand
X 11297303..11297373 440..510 100 <- Minus
X 11297842..11298222 59..439 100 <- Minus
X 11302592..11302649 1..58 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:26:59 Download gff for RT07725.complete
Subject Subject Range Query Range Percent Splice Strand
X 11297303..11297373 440..510 100 <- Minus
X 11297842..11298222 59..439 100 <- Minus
X 11302592..11302649 1..58 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:26:59 Download gff for RT07725.complete
Subject Subject Range Query Range Percent Splice Strand
X 11297303..11297373 440..510 100 <- Minus
X 11297842..11298222 59..439 100 <- Minus
X 11302592..11302649 1..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:22 Download gff for RT07725.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11191336..11191406 440..510 100 <- Minus
arm_X 11191875..11192255 59..439 100 <- Minus
arm_X 11196625..11196682 1..58 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:15:51 Download gff for RT07725.complete
Subject Subject Range Query Range Percent Splice Strand
X 11305940..11306320 59..439 100 <- Minus
X 11310690..11310747 1..58 100   Minus
X 11305401..11305471 440..510 100 <- Minus

RT07725.pep Sequence

Translation from 0 to 509

> RT07725.pep
MPEILDAMEMEAPSDVVDISARETAVNVITIIDASSINNNNNNNNNNNNN
SNSTTNNNHHNSGEPETEIGAVQLQQQQQQQQQQLHLQPASNFVAIPLLE
RRRRSHCRIAPLAPIICIQNGSHPEELVRLSRSRSCFLRIRRTFIKLFGK
IMGSNNPSEADRYDYYDCE*

RT07725.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22356-PA 296 GF22356-PA 123..211 89..167 346 78.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18866-PA 162 GG18866-PA 1..162 1..169 537 81.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12225-PA 254 GH12225-PA 115..195 92..167 283 74.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG44422-PE 363 CG44422-PE 1..167 1..167 866 100 Plus
CG44422-PF 673 CG44422-PF 1..167 1..167 866 100 Plus
Rbp9-PH 439 CG3151-PH 63..125 20..82 148 46 Plus
Rbp9-PG 439 CG3151-PG 63..125 20..82 148 46 Plus
Rbp9-PF 439 CG3151-PF 63..125 20..82 148 46 Plus
Rbp9-PE 439 CG3151-PE 63..125 20..82 148 46 Plus
Rbp9-PK 444 CG3151-PK 63..125 20..82 148 46 Plus
Rbp9-PI 444 CG3151-PI 63..125 20..82 148 46 Plus
Rbp9-PB 444 CG3151-PB 63..125 20..82 148 46 Plus
Rbp9-PC 444 CG3151-PC 63..125 20..82 148 46 Plus
Rbp9-PJ 684 CG3151-PJ 63..125 20..82 148 46 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15756-PA 197 GI15756-PA 93..169 92..162 273 71.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20297-PA 178 GL20297-PA 1..178 1..169 404 64.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28722-PA 182 GA28722-PA 1..182 1..169 390 63.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11252-PA 166 GM11252-PA 1..166 1..169 543 81.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15996-PA 157 GD15996-PA 1..157 10..169 506 83.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18615-PA 175 GJ18615-PA 99..157 92..146 179 67.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16518-PA 166 GK16518-PA 81..166 91..169 267 73.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17307-PA 172 GE17307-PA 1..172 1..169 536 84.2 Plus

RT07725.hyp Sequence

Translation from 1 to 507

> RT07725.hyp
MPEILDAMEMEAPSDVVDISARETAVNVITIIDASSINNNNNNNNNNNNN
SNSTTNNNHHNSGEPETEIGAVQLQQQQQQQQQQLHLQPASNFVAIPLLE
RRRRSHCRIAPLAPIICIQNGSHPEELVRLSRSRSCFLRIRRTFIKLFGK
IMGSNNPSEADRYDYYDCE

RT07725.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG44422-PE 363 CG44422-PE 1..167 1..167 866 100 Plus
CG44422-PF 673 CG44422-PF 1..167 1..167 866 100 Plus
Rbp9-PH 439 CG3151-PH 63..125 20..82 148 46 Plus
Rbp9-PG 439 CG3151-PG 63..125 20..82 148 46 Plus
Rbp9-PF 439 CG3151-PF 63..125 20..82 148 46 Plus