Clone RT07727 Report

Search the DGRC for RT07727

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:77
Well:27
Vector:pCR2.1
Associated Gene/TranscriptCG32212-RA
Protein status:RT07727.pep: Imported from assembly
Sequenced Size:518

Clone Sequence Records

RT07727.complete Sequence

518 bp assembled on 2011-07-27

GenBank Submission: BT124808.2

> RT07727.complete
ACGGAAAAGTGAAAATGGTTAATCGTAACGGGAGACTGTCACAGCATTTA
TATGAACTAAATAAGTGCGAACAGGAGTCAGAGCTGACCACAATTTCGGG
TATAAATATGCTCCACGCAGAGGAGTGGGATATCAAAGAGCTTCTAGCCT
TCCGAAAAAGCACAACACAACGAAATATTCCACCATGTTCAAATACGCCG
TCCTTGTCCTGATAACCGTCGCCTGCGCTGCTGCCAAGCCCGATCTCCTG
GGTGCTGCCCTGGCGTACACTGGTCCTCTGGCTTACTCTGCTCCTCTAGA
CTACTCTGCTCTCGCTGCCGTGGTAACTGCTCCCACTCCACCTGTGACCG
CCACCAGTATCGCCAGGAACAACAATGGAATCGATGCTGCTTCTGAGATT
GCTTCCGTTGCTGCTCCAGTGGTGGCCAAGTACGCTGCTGCTTCTTTGGC
CTACCCTTCGCGTTTGGCCAACTCCGCTCCAATCAGCTGCGCCTCTGCTG
CTGCGCAGGTCATCATCA

RT07727.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32212-RA 520 CG32212-RA 1..517 1..517 2585 100 Plus
nc_13497.b 846 nc_13497.b 36..356 517..197 1605 100 Minus
nc_13497.a 962 nc_13497.a 44..364 517..197 1605 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19477460..19477780 197..517 1590 99.7 Plus
chr3L 24539361 chr3L 19477205..19477401 1..197 985 100 Plus
chr3L 24539361 chr3L 19413254..19413472 197..406 700 89 Plus
chr3L 24539361 chr3L 19456092..19456364 480..217 685 84.2 Minus
chr3L 24539361 chr3L 19467778..19467996 197..406 685 88.6 Plus
chr3L 24539361 chr3L 19464617..19464860 451..217 615 84.4 Minus
chr3L 24539361 chr3L 19462053..19462295 217..450 610 84.4 Plus
chr3L 24539361 chr3L 19461588..19461782 197..1 545 86.3 Minus
chr3L 24539361 chr3L 19465131..19465325 1..197 545 86.3 Plus
chr3L 24539361 chr3L 19413016..19413195 15..197 455 85.8 Plus
chr3L 24539361 chr3L 19467540..19467721 13..197 435 84.9 Plus
chr3L 24539361 chr3L 19456661..19456834 13..197 375 82.7 Plus
chr3L 24539361 chr3L 19467996..19468069 444..517 340 97.3 Plus
chr3L 24539361 chr3L 19413472..19413539 444..511 325 98.5 Plus
chr3L 24539361 chr3L 19456952..19457104 274..417 310 81.7 Plus
chr3L 24539361 chr3L 19465443..19465595 274..417 295 81 Plus
chr3L 24539361 chr3L 19461318..19461470 417..274 295 81 Minus
chr3L 24539361 chr3L 19461431..19461509 295..217 275 89.9 Minus
chr3L 24539361 chr3L 19465404..19465482 217..295 275 89.9 Plus
chr3L 24539361 chr3L 19414231..19414275 410..454 195 95.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19488025..19488345 197..517 1605 100 Plus
3L 28110227 3L 19487770..19487966 1..197 985 100 Plus
3L 28110227 3L 19478353..19478571 197..406 715 89.5 Plus
3L 28110227 3L 19423829..19424047 197..406 700 89 Plus
3L 28110227 3L 19466670..19466942 480..217 670 83.9 Minus
3L 28110227 3L 19475194..19475437 451..217 615 84.4 Minus
3L 28110227 3L 19472630..19472872 217..450 610 84.4 Plus
3L 28110227 3L 19472165..19472359 197..1 545 86.3 Minus
3L 28110227 3L 19475708..19475902 1..197 545 86.3 Plus
3L 28110227 3L 19423591..19423770 15..197 455 85.8 Plus
3L 28110227 3L 19467239..19467412 13..197 375 82.7 Plus
3L 28110227 3L 19478117..19478296 13..197 370 83.8 Plus
3L 28110227 3L 19424047..19424120 444..517 340 97.3 Plus
3L 28110227 3L 19478571..19478644 444..517 340 97.3 Plus
3L 28110227 3L 19467530..19467682 274..417 295 81 Plus
3L 28110227 3L 19471895..19472047 417..274 295 81 Minus
3L 28110227 3L 19476020..19476172 274..417 280 80.4 Plus
3L 28110227 3L 19467491..19467569 217..295 275 89.9 Plus
3L 28110227 3L 19472008..19472086 295..217 275 89.9 Minus
3L 28110227 3L 19475981..19476059 217..295 275 89.9 Plus
3L 28110227 3L 19424825..19424869 410..454 195 95.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19481125..19481445 197..517 1605 100 Plus
3L 28103327 3L 19480870..19481066 1..197 985 100 Plus
3L 28103327 3L 19471453..19471615 197..359 635 92.6 Plus
3L 28103327 3L 19416929..19417091 197..359 620 92 Plus
3L 28103327 3L 19468808..19469002 1..197 560 87.3 Plus
3L 28103327 3L 19465265..19465459 197..1 560 87.3 Minus
3L 28103327 3L 19416691..19416870 15..197 480 86.8 Plus
3L 28103327 3L 19465730..19465872 217..359 430 86.7 Plus
3L 28103327 3L 19459900..19460042 359..217 430 86.7 Minus
3L 28103327 3L 19468395..19468537 359..217 430 86.7 Minus
3L 28103327 3L 19460375..19460512 58..197 380 87.1 Plus
3L 28103327 3L 19459770..19459892 480..358 375 86.9 Minus
3L 28103327 3L 19471217..19471363 13..162 370 85.3 Plus
3L 28103327 3L 19417147..19417220 444..517 340 97.2 Plus
3L 28103327 3L 19471671..19471744 444..517 340 97.2 Plus
3L 28103327 3L 19468294..19468387 451..358 320 89.3 Minus
3L 28103327 3L 19465880..19465972 358..450 315 89.2 Plus
3L 28103327 3L 19465108..19465186 295..217 275 89.8 Minus
3L 28103327 3L 19469081..19469159 217..295 275 89.8 Plus
3L 28103327 3L 19460591..19460669 217..295 275 89.8 Plus
3L 28103327 3L 19460630..19460715 274..359 235 84.8 Plus
3L 28103327 3L 19469120..19469205 274..359 235 84.8 Plus
3L 28103327 3L 19465062..19465147 359..274 235 84.8 Minus
3L 28103327 3L 19471623..19471671 358..406 215 95.9 Plus
3L 28103327 3L 19417099..19417147 358..406 215 95.9 Plus
3L 28103327 3L 19417925..19417969 410..454 195 95.5 Plus
3L 28103327 3L 19460724..19460782 359..417 190 88.1 Plus
3L 28103327 3L 19464995..19465053 417..359 190 88.1 Minus
3L 28103327 3L 19469213..19469272 358..417 180 86.6 Plus
3L 28103327 3L 19460339..19460380 13..54 150 90.4 Plus
3L 28103327 3L 19468216..19468257 451..410 150 90.4 Minus
3L 28103327 3L 19468256..19468293 450..413 145 92.1 Minus
Blast to na_te.dros performed 2019-03-15 10:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2757..2819 446..381 142 72.7 Minus

RT07727.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:51:37 Download gff for RT07727.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19477460..19477780 197..517 99   Plus
chr3L 19477205..19477400 1..196 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-26 16:56:18 Download gff for RT07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG32212-RA 1..333 185..517 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-07-27 09:25:26 Download gff for RT07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG32212-RA 1..333 185..518 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:26:26 Download gff for RT07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG32212-RA 1..333 185..518 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:13:08 Download gff for RT07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG32212-RA 1..333 185..518 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-26 16:56:18 Download gff for RT07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG32212-RA 1..333 185..517 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-27 09:25:26 Download gff for RT07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG32212-RA 1..333 185..517 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:26:26 Download gff for RT07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG32212-RA 1..517 1..517 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:08 Download gff for RT07727.complete
Subject Subject Range Query Range Percent Splice Strand
CG32212-RA 211..727 1..517 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:37 Download gff for RT07727.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19487770..19487965 1..196 100 -> Plus
3L 19488025..19488345 197..517 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:37 Download gff for RT07727.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19487770..19487965 1..196 100 -> Plus
3L 19488025..19488345 197..517 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:37 Download gff for RT07727.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19487770..19487965 1..196 100 -> Plus
3L 19488025..19488345 197..517 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:26:26 Download gff for RT07727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19481125..19481445 197..517 100   Plus
arm_3L 19480870..19481065 1..196 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:09:56 Download gff for RT07727.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19480870..19481065 1..196 100 -> Plus
3L 19481125..19481445 197..517 100   Plus

RT07727.pep Sequence

Translation from 184 to 517

> RT07727.pep
MFKYAVLVLITVACAAAKPDLLGAALAYTGPLAYSAPLDYSALAAVVTAP
TPPVTATSIARNNNGIDAASEIASVAAPVVAKYAAASLAYPSRLANSAPI
SCASAAAQVII

RT07727.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23675-PA 108 GF23675-PA 1..97 1..101 171 65.1 Plus
Dana\GF23677-PA 132 GF23677-PA 1..83 1..80 157 71.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13407-PA 135 GG13407-PA 1..75 1..83 204 66.3 Plus
Dere\GG13406-PA 105 GG13406-PA 1..105 1..111 179 54.1 Plus
Dere\GG16035-PA 121 GG16035-PA 1..69 1..83 172 59.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG32212-PA 111 CG32212-PA 1..111 1..111 535 100 Plus
CG14096-PA 122 CG14096-PA 1..110 1..107 325 69.1 Plus
CG12519-PB 131 CG12519-PB 1..131 1..111 318 61.8 Plus
CG12519-PA 131 CG12519-PA 1..131 1..111 318 61.8 Plus
CG18294-PA 141 CG18294-PA 1..115 1..107 307 66.1 Plus
CG32214-PC 116 CG32214-PC 1..116 1..111 299 64.8 Plus
CG32214-PB 116 CG32214-PB 1..116 1..111 299 64.8 Plus
825-Oak-PB 129 CG32208-PB 1..129 1..111 286 59.3 Plus
CG32213-PB 129 CG32213-PB 1..129 1..111 283 58.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11789-PA 104 GI11789-PA 1..100 1..106 132 48.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12281-PA 135 GD12281-PA 1..120 1..104 148 64.2 Plus
Dsim\GD12284-PA 170 GD12284-PA 36..103 1..65 132 76.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23008-PA 147 GE23008-PA 26..147 1..111 139 61.1 Plus

RT07727.hyp Sequence

Translation from 184 to 517

> RT07727.hyp
MFKYAVLVLITVACAAAKPDLLGAALAYTGPLAYSAPLDYSALAAVVTAP
TPPVTATSIARNNNGIDAASEIASVAAPVVAKYAAASLAYPSRLANSAPI
SCASAAAQVII

RT07727.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG32212-PA 111 CG32212-PA 1..111 1..111 535 100 Plus
CG14096-PA 122 CG14096-PA 1..110 1..107 325 69.1 Plus
CG12519-PB 131 CG12519-PB 1..131 1..111 318 61.8 Plus
CG12519-PA 131 CG12519-PA 1..131 1..111 318 61.8 Plus
CG18294-PA 141 CG18294-PA 1..115 1..107 307 66.1 Plus