Clone RT07795 Report

Search the DGRC for RT07795

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:77
Well:95
Vector:pCR2.1
Associated Gene/TranscriptCG8870-RA
Protein status:RT07795.pep: gold
Sequenced Size:1071

Clone Sequence Records

RT07795.complete Sequence

1071 bp assembled on 2010-07-20

GenBank Submission: BT124828.2

> RT07795.complete
ATGTTGTTCGGACTTATAGGATCATTTTTGCTTATGCTGCAAATAATTCT
TGTGCCTTATTCAAATGGTGCAGGGTGTCAATTTGATACGGAATGCGTGA
ATCTGGATAAGTGTCCCAGGACCAGAGCAGTTATGAACTCATCCAGGAAA
AATATAATAGGTCTTAGAAGATGCGGCACTAATAAAGTGTGCTGCCCCAA
GTGGGAAACGTATCTGCCACACGATACTTGTGGACAATCAAGAAGAAAAC
CTACGAAGGGCAAAATACCGGCGCTGAATGAGTTTCCCTGGATGGCCATG
CTGTTATATGGAAATAAAAACAATTTGTCCCAGAAGCTGGTACCAAAATG
TGGTGGATCCCTAATAAACAACTGGTACGTCCTGACCGCAGCGCACTGCG
TGGAGTATCCATTTATGGACTATCCGTATGCCCTCAAAACAGTGAGACTG
GGCGAACATAACACGTCCACAAATCCCGATCGGGCTATTGTGAATGGAAG
AAGACAGTACGCTCCTCTTTATATGGAAATTGAAGTGGACCAAATTATTA
CGCATGAACAATTCAACCGGGGAAGGCGGCTGATAAACGACATAGCACTC
GTGCGTCTTAAGTTTCCTGTGCGCTATACGAGAGCCATCCAACCTATTTG
CCTTCCAAGAGCCCAAAAATTGGCCGCGCATAAGCGAAAGTTTCAAGCAT
CCGGCTGGCCAGACATGGGACAAGGAATTGCAAGTGAGGTACTCTTGCGC
AGCTTCATCGCGGAACGGCATCCAGATGTGTGCAAATCAAATTATGACTT
TAATTTGGGCAGTCAGATATGTGCTGGTGGTCTGGATGGGAATGACACCA
GTCCCGGCGATTCCGGGGGACCCTTAATGGAGACCGTGATACGTGGAAAG
GTCACACTCACTTATGCAGCCGGCATAATCTCCTACGGACAGAAGCCCTG
CGTACTTAAAACTTGCAAGCCAGCATTTTACACAAAAACTTCATACTTTT
TTGAATGGATAAAATCGAAATTGCAAAGTCCATTTATCGACAGCGACAGC
AAATCTCGTACTAGAAAATAA

RT07795.complete Blast Records

Blast to MB8.fasta performed 2010-07-20 13:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8870-RA 1369 CG8870-RA 299..1369 1..1071 5355 100 Plus
CG8870.a 1067 CG8870.a 68..1067 72..1071 5000 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9205461..9206013 71..623 2735 99.6 Plus
chr3R 27901430 chr3R 9206090..9206536 623..1069 2235 100 Plus
chr3R 27901430 chr3R 9205335..9205408 1..74 370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13380266..13380818 71..623 2765 100 Plus
3R 32079331 3R 13380895..13381343 623..1071 2245 100 Plus
3R 32079331 3R 13380140..13380213 1..74 370 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13121097..13121649 71..623 2765 100 Plus
3R 31820162 3R 13121726..13122174 623..1071 2245 100 Plus
3R 31820162 3R 13120971..13121044 1..74 370 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:25:42 has no hits.

RT07795.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:26:29 Download gff for RT07795.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9205335..9205407 1..73 100 -> Plus
chr3R 9205464..9206013 74..623 99 -> Plus
chr3R 9206091..9206538 624..1071 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-20 12:43:01 Download gff for RT07795.complete
Subject Subject Range Query Range Percent Splice Strand
CG8870-RA 1..1069 1..1069 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-17 17:08:13 Download gff for RT07795.complete
Subject Subject Range Query Range Percent Splice Strand
CG8870-RA 1..1071 1..1071 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:19:12 Download gff for RT07795.complete
Subject Subject Range Query Range Percent Splice Strand
CG8870-RA 1..1071 1..1071 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:05:09 Download gff for RT07795.complete
Subject Subject Range Query Range Percent Splice Strand
CG8870-RA 1..1071 1..1071 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-20 12:43:00 Download gff for RT07795.complete
Subject Subject Range Query Range Percent Splice Strand
CG8870-RA 1..1069 1..1069 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-17 17:08:13 Download gff for RT07795.complete
Subject Subject Range Query Range Percent Splice Strand
CG8870-RA 1..1071 1..1071 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:19:12 Download gff for RT07795.complete
Subject Subject Range Query Range Percent Splice Strand
CG8870-RA 1..1071 1..1071 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:05:09 Download gff for RT07795.complete
Subject Subject Range Query Range Percent Splice Strand
CG8870-RA 299..1369 1..1071 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:26:29 Download gff for RT07795.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13380140..13380212 1..73 100 -> Plus
3R 13380269..13380818 74..623 100 -> Plus
3R 13380896..13381343 624..1071 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:26:29 Download gff for RT07795.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13380140..13380212 1..73 100 -> Plus
3R 13380269..13380818 74..623 100 -> Plus
3R 13380896..13381343 624..1071 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:26:29 Download gff for RT07795.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13380140..13380212 1..73 100 -> Plus
3R 13380269..13380818 74..623 100 -> Plus
3R 13380896..13381343 624..1071 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:19:12 Download gff for RT07795.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9205862..9205934 1..73 100 -> Plus
arm_3R 9205991..9206540 74..623 100 -> Plus
arm_3R 9206618..9207065 624..1071 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:40:59 Download gff for RT07795.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13121100..13121649 74..623 100 -> Plus
3R 13121727..13122174 624..1071 100   Plus
3R 13120971..13121043 1..73 100 -> Plus

RT07795.pep Sequence

Translation from 0 to 1070

> RT07795.pep
MLFGLIGSFLLMLQIILVPYSNGAGCQFDTECVNLDKCPRTRAVMNSSRK
NIIGLRRCGTNKVCCPKWETYLPHDTCGQSRRKPTKGKIPALNEFPWMAM
LLYGNKNNLSQKLVPKCGGSLINNWYVLTAAHCVEYPFMDYPYALKTVRL
GEHNTSTNPDRAIVNGRRQYAPLYMEIEVDQIITHEQFNRGRRLINDIAL
VRLKFPVRYTRAIQPICLPRAQKLAAHKRKFQASGWPDMGQGIASEVLLR
SFIAERHPDVCKSNYDFNLGSQICAGGLDGNDTSPGDSGGPLMETVIRGK
VTLTYAAGIISYGQKPCVLKTCKPAFYTKTSYFFEWIKSKLQSPFIDSDS
KSRTRK*

RT07795.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16252-PA 399 GF16252-PA 42..399 31..343 400 32.5 Plus
Dana\GF18202-PA 393 GF18202-PA 141..392 94..342 379 38.3 Plus
Dana\GF23198-PA 392 GF23198-PA 136..392 92..343 372 34.5 Plus
Dana\GF16189-PA 413 GF16189-PA 119..403 75..355 343 33.9 Plus
Dana\GF17450-PA 360 GF17450-PA 39..360 31..343 332 30.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19643-PA 337 GG19643-PA 1..337 1..341 1202 67.2 Plus
Dere\GG11215-PA 345 GG11215-PA 10..343 8..341 518 38 Plus
Dere\GG24123-PA 302 GG24123-PA 1..295 44..343 449 39.7 Plus
Dere\GG11217-PA 407 GG11217-PA 139..407 87..343 432 39.6 Plus
Dere\GG12412-PA 311 GG12412-PA 66..310 93..342 418 43.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17456-PA 395 GH17456-PA 121..395 76..343 411 36.2 Plus
Dgri\GH14281-PA 578 GH14281-PA 322..577 92..342 400 36 Plus
Dgri\GH19111-PA 344 GH19111-PA 93..343 94..342 386 38.5 Plus
Dgri\GH17229-PA 387 GH17229-PA 135..387 94..343 382 36.2 Plus
Dgri\GH20292-PA 242 GH20292-PA 4..239 96..341 357 36 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8870-PA 356 CG8870-PA 1..356 1..356 1918 100 Plus
CG31220-PB 363 CG31220-PB 27..362 26..342 549 41 Plus
CG10232-PD 509 CG10232-PD 188..508 26..342 520 38.5 Plus
CG16710-PB 372 CG16710-PB 30..362 26..337 517 39.1 Plus
CG31219-PB 345 CG31219-PB 8..344 9..342 506 40 Plus
CG12133-PB 340 CG12133-PB 38..321 64..341 458 42.4 Plus
CG18754-PB 341 CG18754-PB 28..339 24..341 429 36.3 Plus
CG18754-PC 296 CG18754-PC 9..294 45..341 412 37.4 Plus
SPE-PA 400 CG16705-PA 138..399 87..342 404 41.1 Plus
MP1-PA 390 CG1102-PA 39..390 32..343 394 31.8 Plus
MP1-PC 399 CG1102-PC 83..399 55..343 389 33.7 Plus
MP1-PE 400 CG1102-PE 83..400 58..343 389 34 Plus
ea-PB 261 CG4920-PB 5..261 92..343 380 36 Plus
ea-PA 392 CG4920-PA 136..392 92..343 380 36 Plus
CG3505-PA 360 CG3505-PA 40..360 32..343 351 30.9 Plus
CG9737-PA 424 CG9737-PA 153..411 87..342 343 35.3 Plus
CG11313-PC 367 CG11313-PC 3..366 5..342 328 32.5 Plus
CG11313-PD 370 CG11313-PD 3..369 5..342 319 32.5 Plus
CG9733-PB 417 CG9733-PB 158..417 81..343 316 34.1 Plus
CG9733-PA 418 CG9733-PA 159..418 81..343 316 34.1 Plus
CG30289-PA 316 CG30289-PA 28..275 75..341 304 34.2 Plus
Sp7-PF 391 CG3066-PF 136..385 83..337 304 35.2 Plus
Sp7-PE 391 CG3066-PE 136..385 83..337 304 35.2 Plus
Sp7-PA 391 CG3066-PA 136..385 83..337 304 35.2 Plus
grass-PA 335 CG5896-PA 41..332 59..343 303 30.1 Plus
grass-PB 377 CG5896-PB 83..374 59..343 303 30.1 Plus
Ser7-PA 397 CG2045-PA 121..394 74..343 298 31.8 Plus
CG30088-PB 281 CG30088-PB 47..278 86..343 290 32.8 Plus
CG30087-PA 277 CG30087-PA 37..271 79..338 280 32.2 Plus
CG30082-PB 280 CR30082-PB 17..273 66..339 273 32.5 Plus
CG5909-PA 381 CG5909-PA 122..381 77..342 272 29.5 Plus
teq-PD 1450 CG4821-PD 1196..1448 75..346 271 28.7 Plus
teq-PF 2379 CG4821-PF 2125..2377 75..346 271 28.7 Plus
teq-PG 2792 CG4821-PG 2538..2790 75..346 271 28.7 Plus
CG1299-PB 442 CG1299-PB 190..439 82..342 268 31.9 Plus
CG1299-PA 511 CG1299-PA 259..508 82..342 268 31.9 Plus
CG30414-PC 305 CG30414-PC 24..295 71..342 266 30.6 Plus
CG30414-PB 305 CG30414-PB 24..295 71..342 266 30.6 Plus
CG30083-PB 279 CG30083-PB 46..273 96..355 259 31 Plus
CG32260-PC 395 CG32260-PC 137..394 76..343 259 29.3 Plus
CG32260-PA 575 CG32260-PA 317..574 76..343 259 29.3 Plus
CG30286-PB 277 CG30286-PB 43..277 92..346 250 31.9 Plus
CG18735-PA 364 CG18735-PA 73..311 76..337 248 30.6 Plus
CG17572-PA 385 CG17572-PA 60..378 17..337 248 28.4 Plus
CG30287-PA 284 CG30287-PA 22..278 69..338 243 30.2 Plus
CG4386-PA 372 CG4386-PA 130..356 87..339 243 29.6 Plus
CG30002-PB 311 CG30002-PB 63..305 85..341 241 33.1 Plus
CG1773-PA 317 CG1773-PA 59..305 81..341 241 32.6 Plus
CG9294-PB 352 CG9294-PB 104..336 87..339 241 30.7 Plus
CG11841-PA 319 CG11841-PA 58..314 70..341 239 31.3 Plus
CG30090-PA 291 CG30090-PA 43..278 87..342 238 32.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22780-PA 412 GI22780-PA 137..411 76..342 411 39.1 Plus
Dmoj\GI24877-PA 392 GI24877-PA 136..391 92..342 379 34.2 Plus
Dmoj\GI10853-PA 285 GI10853-PA 15..284 77..342 363 35.1 Plus
Dmoj\GI15987-PA 407 GI15987-PA 79..405 38..354 362 32.7 Plus
Dmoj\GI23202-PA 376 GI23202-PA 82..367 59..337 335 33 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13651-PA 382 GL13651-PA 28..382 24..343 499 37.4 Plus
Dper\GL13652-PA 401 GL13652-PA 48..401 32..343 426 33.6 Plus
Dper\GL12316-PA 391 GL12316-PA 139..390 94..342 377 37.5 Plus
Dper\GL23240-PA 395 GL23240-PA 139..394 92..342 371 34.6 Plus
Dper\GL12453-PA 383 GL12453-PA 93..382 42..342 353 35.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26978-PA 382 GA26978-PA 28..382 24..343 500 37.4 Plus
Dpse\GA14092-PA 403 GA14092-PA 50..403 32..343 431 33.9 Plus
Dpse\GA10711-PA 391 GA10711-PA 139..390 94..342 383 37.9 Plus
Dpse\GA18526-PA 395 GA18526-PA 139..394 92..342 373 34.6 Plus
Dpse\GA17488-PB 370 GA17488-PB 48..370 32..343 354 32.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26855-PA 367 GM26855-PA 1..366 1..342 579 39.1 Plus
Dsec\GM26514-PA 368 GM26514-PA 10..367 8..346 537 38.6 Plus
Dsec\GM21170-PA 377 GM21170-PA 37..322 63..341 502 43 Plus
Dsec\GM26516-PA 400 GM26516-PA 138..399 87..342 425 41.5 Plus
Dsec\GM26515-PA 296 GM26515-PA 9..294 45..341 405 35.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18905-PA 338 GD18905-PA 1..336 1..348 1377 75.4 Plus
Dsim\GD18360-PA 332 GD18360-PA 3..331 18..342 559 40.8 Plus
Dsim\GD21023-PA 368 GD21023-PA 10..362 8..341 523 38.6 Plus
Dsim\GD19305-PA 287 GD19305-PA 4..286 63..342 513 43.8 Plus
Dsim\GD10703-PA 377 GD10703-PA 37..328 63..347 466 40.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22783-PA 401 GJ22783-PA 46..400 26..342 404 33.4 Plus
Dvir\GJ24520-PA 877 GJ24520-PA 621..876 92..342 387 34.8 Plus
Dvir\GJ14460-PA 396 GJ14460-PA 144..396 94..343 367 36.7 Plus
Dvir\GJ18716-PA 398 GJ18716-PA 65..387 48..341 360 33 Plus
Dvir\GJ10951-PA 386 GJ10951-PA 119..386 72..343 347 34.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11130-PA 392 GK11130-PA 47..392 32..343 389 31.4 Plus
Dwil\GK10951-PA 391 GK10951-PA 139..390 94..342 369 37.6 Plus
Dwil\GK25542-PA 285 GK25542-PA 2..265 87..343 358 34.9 Plus
Dwil\GK13188-PA 395 GK13188-PA 42..395 32..343 358 31.6 Plus
Dwil\GK25360-PA 410 GK25360-PA 146..405 92..342 358 34.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26269-PA 304 GE26269-PA 2..304 49..351 1153 69.3 Plus
Dyak\GE25617-PA 310 GE25617-PA 4..309 47..342 558 40.8 Plus
Dyak\GE10379-PA 366 GE10379-PA 28..361 26..341 558 40.8 Plus
Dyak\GE25618-PA 298 GE25618-PA 14..297 62..342 541 46 Plus
Dyak\GE10381-PA 322 GE10381-PA 2..320 24..341 481 37.2 Plus

RT07795.hyp Sequence

Translation from 1 to 1068

> RT07795.hyp
MLFGLIGSFLLMLQIILVPYSNGAGCQFDTECVNLDKCPRTRAVMNSSRK
NIIGLRRCGTNKVCCPKWETYLPHDTCGQSRRKPTKGKIPALNEFPWMAM
LLYGNKNNLSQKLVPKCGGSLINNWYVLTAAHCVEYPFMDYPYALKTVRL
GEHNTSTNPDRAIVNGRRQYAPLYMEIEVDQIITHEQFNRGRRLINDIAL
VRLKFPVRYTRAIQPICLPRAQKLAAHKRKFQASGWPDMGQGIASEVLLR
SFIAERHPDVCKSNYDFNLGSQICAGGLDGNDTSPGDSGGPLMETVIRGK
VTLTYAAGIISYGQKPCVLKTCKPAFYTKTSYFFEWIKSKLQSPFIDSDS
KSRTRK

RT07795.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8870-PA 356 CG8870-PA 1..356 1..356 1918 100 Plus
CG31220-PB 363 CG31220-PB 27..362 26..342 549 41 Plus
CG10232-PD 509 CG10232-PD 188..508 26..342 520 38.5 Plus
CG16710-PB 372 CG16710-PB 30..362 26..337 517 39.1 Plus
CG31219-PB 345 CG31219-PB 8..344 9..342 506 40 Plus