Clone RT07885 Report

Search the DGRC for RT07885

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:78
Well:85
Vector:pCR2.1
Associated Gene/TranscriptCG33257-RA
Protein status:RT07885.pep: gold
Sequenced Size:993

Clone Sequence Records

RT07885.complete Sequence

993 bp assembled on 2010-04-26

GenBank Submission: BT124801.1

> RT07885.complete
ATGTACGGCCAAGGATTACGTTTTCTTCTCGCCCAGCTTGTTTTGGTGCT
CCTTTTGTCCAATGCCTTGGGTCGCCTGCACAAGAGGAATGGCTATCACT
ACCGACCGCAGCAACCGCCACCAATCCACCAAGGTGGTTACTTTGAGCCC
CATCTGCCGGCAGTAGAGCCTCCCGAGCCAGAGAAGCCACAACATAGCAC
CAAAAGCTACTACACCACATCGGGAGGTAGCTCCTCAGTTTCCAGCAAGG
GATCCGGTGGCTATAGCATTGGCAGCGGCCTGCGTTCCATTGCCCAGGGA
TCGGCGGATCAGGCTCACAGTGCAGTGACCAACCAGCATGCAGCTGCCAA
GCAGGCGGCCTATATAGCCCAGAATACACTGGCCCAAGCGGCTTCTCAGG
CGGCGGCCACTGCACAAGCGGCTCTGGTGGGCAAGCAGGTTGTTCTCCAG
GAGTTGGAGCAGCAGGCAGCCGAGGCCCAAAGATCTCTGTCCCGTGAGCT
AGAGCAACTGAAGGCGGCCAAGATCTCCGCGAGATTGGCACAGCAAACGG
CACAAGCGGCGCATCATCACATATCCGTGCTCACAGCTGCGGTAAATAAT
GCCAAATCCGTGGCCGAACAGGCTGAGCAAACCTCCACGGAGGTGAACAA
TCAACTGGCCTCCCAATCCCAGATGGTGGGTCAGTCCAAGAACCGATTAG
AGCAGGTTGAGGAGCAGTTGCACCAGGCGCGCGTAGACTATGCGGCCACC
AAGGAGTCCGCCCTTAAGGCGGCCAATTCCGCAGCTGCGGCTCAGGTGAA
TGCATCCAAGGCGGCCCAGCATGCCACGATCGGATTGCATGAGAGCACGA
ATCCATCAGCCCACGGGCACGATGGTCAGGAGTTGGGTGGCGAGGAGGAG
TCCTACGATGAGCACCTAGACACCAGTGGCGGGGAAGTGGGACACACTGG
CGGAGGAGAGGAACTATCCGAACATATTCGAGCTCCATATTAG

RT07885.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG33257-RA 1128 CG33257-RA 26..1018 1..993 4965 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16336430..16337381 42..993 4685 99.5 Plus
chr3L 24539361 chr3L 16336084..16336129 1..46 230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16346669..16347620 42..993 4745 99.9 Plus
3L 28110227 3L 16346323..16346368 1..46 230 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16339769..16340720 42..993 4745 99.8 Plus
3L 28103327 3L 16339423..16339468 1..46 230 100 Plus
Blast to na_te.dros performed on 2019-03-16 17:32:31 has no hits.

RT07885.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:33:34 Download gff for RT07885.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16336084..16336129 1..46 100 -> Plus
chr3L 16336435..16337381 47..993 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-26 16:09:19 Download gff for RT07885.complete
Subject Subject Range Query Range Percent Splice Strand
CG33257-RA 1..993 1..993 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:30:37 Download gff for RT07885.complete
Subject Subject Range Query Range Percent Splice Strand
CG33257-RA 1..993 1..993 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:34:46 Download gff for RT07885.complete
Subject Subject Range Query Range Percent Splice Strand
CG33257-RA 1..993 1..993 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:00:50 Download gff for RT07885.complete
Subject Subject Range Query Range Percent Splice Strand
CG33257-RA 1..993 1..993 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-26 16:09:18 Download gff for RT07885.complete
Subject Subject Range Query Range Percent Splice Strand
CG33257-RA 1..993 1..993 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:30:37 Download gff for RT07885.complete
Subject Subject Range Query Range Percent Splice Strand
CG33257-RA 1..993 1..993 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:46 Download gff for RT07885.complete
Subject Subject Range Query Range Percent Splice Strand
CG33257-RA 1..993 1..993 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:00:50 Download gff for RT07885.complete
Subject Subject Range Query Range Percent Splice Strand
CG33257-RA 1..993 1..993 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:33:34 Download gff for RT07885.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16346323..16346368 1..46 100 -> Plus
3L 16346674..16347620 47..993 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:33:34 Download gff for RT07885.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16346323..16346368 1..46 100 -> Plus
3L 16346674..16347620 47..993 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:33:34 Download gff for RT07885.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16346323..16346368 1..46 100 -> Plus
3L 16346674..16347620 47..993 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:46 Download gff for RT07885.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16339423..16339468 1..46 100 -> Plus
arm_3L 16339774..16340720 47..993 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:15:45 Download gff for RT07885.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16339774..16340720 47..993 100   Plus
3L 16339423..16339468 1..46 100 -> Plus

RT07885.pep Sequence

Translation from 0 to 992

> RT07885.pep
MYGQGLRFLLAQLVLVLLLSNALGRLHKRNGYHYRPQQPPPIHQGGYFEP
HLPAVEPPEPEKPQHSTKSYYTTSGGSSSVSSKGSGGYSIGSGLRSIAQG
SADQAHSAVTNQHAAAKQAAYIAQNTLAQAASQAAATAQAALVGKQVVLQ
ELEQQAAEAQRSLSRELEQLKAAKISARLAQQTAQAAHHHISVLTAAVNN
AKSVAEQAEQTSTEVNNQLASQSQMVGQSKNRLEQVEEQLHQARVDYAAT
KESALKAANSAAAAQVNASKAAQHATIGLHESTNPSAHGHDGQELGGEEE
SYDEHLDTSGGEVGHTGGGEELSEHIRAPY*

RT07885.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24190-PA 332 GF24190-PA 1..332 1..330 1165 85.3 Plus
Dana\GF16671-PA 319 GF16671-PA 8..303 10..291 405 44.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15995-PA 330 GG15995-PA 1..330 1..330 1628 97 Plus
Dere\GG17459-PA 302 GG17459-PA 69..286 70..291 374 51.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15884-PA 348 GH15884-PA 1..346 1..327 744 62.9 Plus
Dgri\GH14118-PA 352 GH14118-PA 128..330 88..294 365 49.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG33257-PA 330 CG33257-PA 1..330 1..330 1655 100 Plus
CG11693-PB 323 CG11693-PB 7..322 10..306 526 43.5 Plus
CG11693-PA 318 CG11693-PA 16..317 24..306 519 44.2 Plus
CG14840-PA 300 CG14840-PA 7..265 13..271 263 30.1 Plus
CG11694-PA 261 CG11694-PA 41..249 76..277 235 31.6 Plus
CG14839-PA 282 CG14839-PA 86..254 97..265 228 32.5 Plus
CG14354-PA 298 CG14354-PA 67..239 96..268 217 30.6 Plus
CG34459-PC 305 CG34459-PC 124..295 97..268 202 28.5 Plus
CG34459-PB 305 CG34459-PB 124..295 97..268 202 28.5 Plus
CG34459-PA 305 CG34459-PA 124..295 97..268 202 28.5 Plus
CG14841-PA 274 CG14841-PA 48..262 59..270 199 28.4 Plus
CG12985-PA 370 CG12985-PA 125..293 97..265 173 26.6 Plus
CG11698-PA 262 CG11698-PA 54..222 97..265 155 25.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16535-PA 326 GI16535-PA 1..323 1..323 797 69.9 Plus
Dmoj\GI10645-PA 337 GI10645-PA 117..322 90..299 385 52.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17854-PA 346 GL17854-PA 1..344 1..330 965 76.1 Plus
Dper\GL24120-PA 338 GL24120-PA 119..321 88..294 347 51.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28516-PA 346 GA28516-PA 1..344 1..330 964 75.8 Plus
Dpse\GA11145-PA 334 GA11145-PA 115..317 88..294 349 51.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25626-PA 330 GM25626-PA 1..330 1..330 1644 97.9 Plus
Dsec\GM26353-PA 324 GM26353-PA 90..311 69..294 351 50 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14630-PA 330 GD14630-PA 1..330 1..330 1654 98.2 Plus
Dsim\GD20875-PA 318 GD20875-PA 103..310 88..299 351 50.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12787-PA 325 GJ12787-PA 1..321 1..325 782 68.6 Plus
Dvir\GJ23002-PA 327 GJ23002-PA 72..317 55..301 409 49.2 Plus
Dvir\GJ20562-PA 352 GJ20562-PA 76..232 96..252 151 34.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14104-PA 318 GK14104-PA 4..302 6..294 400 44.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23181-PA 329 GE23181-PA 1..329 1..330 1601 96.4 Plus
Dyak\GE19559-PA 329 GE19559-PA 1..329 1..330 1601 96.4 Plus
Dyak\GE24858-PA 324 GE24858-PA 76..316 55..299 344 46.9 Plus

RT07885.hyp Sequence

Translation from 1 to 992

> RT07885.hyp
MYGQGLRFLLAQLVLVLLLSNALGRLHKRNGYHYRPQQPPPIHQGGYFEP
HLPAVEPPEPEKPQHSTKSYYTTSGGSSSVSSKGSGGYSIGSGLRSIAQG
SADQAHSAVTNQHAAAKQAAYIAQNTLAQAASQAAATAQAALVGKQVVLQ
ELEQQAAEAQRSLSRELEQLKAAKISARLAQQTAQAAHHHISVLTAAVNN
AKSVAEQAEQTSTEVNNQLASQSQMVGQSKNRLEQVEEQLHQARVDYAAT
KESALKAANSAAAAQVNASKAAQHATIGLHESTNPSAHGHDGQELGGEEE
SYDEHLDTSGGEVGHTGGGEELSEHIRAPY*

RT07885.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG33257-PA 330 CG33257-PA 1..330 1..330 1655 100 Plus
CG11693-PB 323 CG11693-PB 7..322 10..306 526 43.5 Plus
CG11693-PA 318 CG11693-PA 16..317 24..306 519 44.2 Plus
CG14840-PA 300 CG14840-PA 7..265 13..271 263 30.1 Plus
CG11694-PA 261 CG11694-PA 41..249 76..277 235 31.6 Plus