Clone RT07891 Report

Search the DGRC for RT07891

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:78
Well:91
Vector:pCR2.1
Associated Gene/TranscriptCG34448-RA
Protein status:RT07891.pep: gold
Sequenced Size:1035

Clone Sequence Records

RT07891.complete Sequence

1035 bp assembled on 2010-04-26

GenBank Submission: BT124802.1

> RT07891.complete
ATGAGCATATACAGCACGCTGATCCTTCTTTTGACAATAGTCTCCGGTTT
CTGCAAAGGAGAAAATCATACGCGTGGCTGGCTGCCAGAGTTCTGTGTCG
TCGGCGAGCAAAAGTGTCCCAACTCGCGAGTTTCGTTTTGGCTTTACACC
AACCAAACACGCGACGATCCCATACAATTAGATCCTTTGAATCCGCAAAA
GGATGTCTTCCAGCCGCGTCTGCCACTCAAGATACTCATCCATGGATTTA
TAGGCAACAGGAACTTGACACCCAATTTGGAAGTTAGAGATGTGCTGCTC
CAAACTCAGCCTATAAATGTGATATCGGTGGACTATGGGACATTGGTTCG
ATGGCCGTGCTATTATCCTTGGGCTGTGAATAATGCACCAATTGTTTCTG
AGTGTCTGGCCCAGATGATAAATAATCTAATCTCAGCTGGCATCAGCAGA
CGTGAAGATATTCACTTGATAGGCTTCAGTTTGGGAGCACAAGTGGCTGG
AATGGTGGCCAACTATGTGAGCCAACCTCTGGCCAGGATTACTGGACTGG
ATCCTGCGGGTCCTGGCTTTATGATGCAGCCCTCCTTGCAGCAAAAACTG
GATGCCAGTGATGCCGACTTTGTGGACATCATACACACCGATCCGTTCTT
CTTCTCGATGCTGCCGCCAATGGGTCATGCAGACTTTTACCCCAATCTCG
ACCAGCTTAATCAGCGGGGATGCAGTTACATCAGCAACTGGAGATTTTAC
AACTGCAATCATTATCGGGCAGCCGTATACTACGGCGAATCAATAATCTC
GGAGAGGGGTTTTTGGGCCCAGCAATGCGGTGGATGGTTCGATTTCTTCT
CGCAGCGGTGCAGCCACTACTCCAATATGCCCAATACGCAAATGGGTTAC
TTTGTCTCAGAAGATGCGTCTGGCTCGTACTTTCTCACCACCCATGAGGT
TGCTCCTTTTGCCAAAGGACCTCTGGTTGAAGTCGAATTTGACGTTTCGG
AACTTCGAAATTTTACGGAAATAGAATTAAGATGA

RT07891.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG34448-RA 1052 CG34448-RA 1..1035 1..1035 5175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2416737..2417502 914..149 3800 99.7 Minus
chr2L 23010047 chr2L 2417561..2417712 152..1 760 100 Minus
chr2L 23010047 chr2L 2416557..2416676 1034..915 600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2416990..2417751 914..153 3810 100 Minus
2L 23513712 2L 2417814..2417965 152..1 760 100 Minus
2L 23513712 2L 2416809..2416929 1035..915 605 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2416990..2417751 914..153 3810 100 Minus
2L 23513712 2L 2417814..2417965 152..1 760 100 Minus
2L 23513712 2L 2416809..2416929 1035..915 605 100 Minus
Blast to na_te.dros performed on 2019-03-16 08:08:42 has no hits.

RT07891.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:09:37 Download gff for RT07891.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2416557..2416676 915..1034 100 <- Minus
chr2L 2416737..2417498 153..914 99 <- Minus
chr2L 2417561..2417712 1..152 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-26 16:14:29 Download gff for RT07891.complete
Subject Subject Range Query Range Percent Splice Strand
CG34448-RA 1..1034 1..1034 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:30:39 Download gff for RT07891.complete
Subject Subject Range Query Range Percent Splice Strand
CG34448-RA 1..1034 1..1034 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:41:55 Download gff for RT07891.complete
Subject Subject Range Query Range Percent Splice Strand
CG34448-RA 1..1035 1..1035 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:35:37 Download gff for RT07891.complete
Subject Subject Range Query Range Percent Splice Strand
CG34448-RA 1..1035 1..1035 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-26 16:14:29 Download gff for RT07891.complete
Subject Subject Range Query Range Percent Splice Strand
CG34448-RA 1..1034 1..1034 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:30:39 Download gff for RT07891.complete
Subject Subject Range Query Range Percent Splice Strand
CG34448-RA 1..1034 1..1034 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:41:55 Download gff for RT07891.complete
Subject Subject Range Query Range Percent Splice Strand
CG34448-RA 1..1034 1..1034 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:35:37 Download gff for RT07891.complete
Subject Subject Range Query Range Percent Splice Strand
CG34448-RA 1..1034 1..1034 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:09:37 Download gff for RT07891.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2417814..2417965 1..152 100   Minus
2L 2416810..2416929 915..1034 100 <- Minus
2L 2416990..2417751 153..914 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:09:37 Download gff for RT07891.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2417814..2417965 1..152 100   Minus
2L 2416810..2416929 915..1034 100 <- Minus
2L 2416990..2417751 153..914 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:09:37 Download gff for RT07891.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2417814..2417965 1..152 100   Minus
2L 2416810..2416929 915..1034 100 <- Minus
2L 2416990..2417751 153..914 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:41:55 Download gff for RT07891.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2416810..2416929 915..1034 100 <- Minus
arm_2L 2416990..2417751 153..914 100 <- Minus
arm_2L 2417814..2417965 1..152 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:15:47 Download gff for RT07891.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2416990..2417751 153..914 100 <- Minus
2L 2417814..2417965 1..152 100   Minus
2L 2416810..2416929 915..1034 100 <- Minus

RT07891.pep Sequence

Translation from 0 to 1034

> RT07891.pep
MSIYSTLILLLTIVSGFCKGENHTRGWLPEFCVVGEQKCPNSRVSFWLYT
NQTRDDPIQLDPLNPQKDVFQPRLPLKILIHGFIGNRNLTPNLEVRDVLL
QTQPINVISVDYGTLVRWPCYYPWAVNNAPIVSECLAQMINNLISAGISR
REDIHLIGFSLGAQVAGMVANYVSQPLARITGLDPAGPGFMMQPSLQQKL
DASDADFVDIIHTDPFFFSMLPPMGHADFYPNLDQLNQRGCSYISNWRFY
NCNHYRAAVYYGESIISERGFWAQQCGGWFDFFSQRCSHYSNMPNTQMGY
FVSEDASGSYFLTTHEVAPFAKGPLVEVEFDVSELRNFTEIELR*

RT07891.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14402-PA 389 GF14402-PA 151..387 48..303 1152 83.6 Plus
Dana\GF15520-PA 326 GF15520-PA 8..290 34..323 565 43.8 Plus
Dana\GF14403-PA 361 GF14403-PA 42..345 24..323 433 34.2 Plus
Dana\GF14541-PA 465 GF14541-PA 66..355 37..328 414 36.1 Plus
Dana\GF11422-PA 349 GF11422-PA 2..284 48..322 345 36 Plus
Dana\GF14402-PA 389 GF14402-PA 1..107 220..329 206 41.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24521-PA 322 GG24521-PA 1..322 1..341 1618 88.9 Plus
Dere\GG24519-PA 353 GG24519-PA 11..286 49..329 637 48.8 Plus
Dere\GG24523-PA 348 GG24523-PA 29..332 24..323 439 34.2 Plus
Dere\GG20104-PA 489 GG20104-PA 72..361 37..328 409 35.4 Plus
Dere\GG20643-PA 394 GG20643-PA 34..334 25..322 359 35.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11500-PA 334 GH11500-PA 10..333 7..334 1298 71.3 Plus
Dgri\GH11499-PA 384 GH11499-PA 1..321 3..329 744 48.6 Plus
Dgri\GH11187-PA 332 GH11187-PA 12..312 39..338 592 42.1 Plus
Dgri\GH13774-PA 475 GH13774-PA 64..363 37..336 450 37.7 Plus
Dgri\GH22562-PA 245 GH22562-PA 1..225 116..338 417 40.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG34448-PA 344 CG34448-PA 1..344 1..344 1864 100 Plus
CG34447-PA 389 CG34447-PA 3..322 5..329 730 47.7 Plus
CG34447-PB 389 CG34447-PB 3..322 5..329 730 47.7 Plus
CG14034-PC 338 CG14034-PC 33..311 39..323 531 41.8 Plus
CG14034-PB 338 CG14034-PB 33..311 39..323 531 41.8 Plus
CG18641-PC 369 CG18641-PC 39..353 13..323 454 33.6 Plus
CG13282-PB 484 CG13282-PB 70..354 37..323 420 36.1 Plus
CG13282-PA 484 CG13282-PA 70..354 37..323 420 36.1 Plus
CG6472-PB 389 CG6472-PB 29..329 25..322 361 35.8 Plus
CG7367-PD 358 CG7367-PD 74..351 41..323 325 30.6 Plus
CG7367-PB 358 CG7367-PB 74..351 41..323 325 30.6 Plus
CG7367-PC 389 CG7367-PC 105..382 41..323 325 30.6 Plus
CG10357-PC 321 CG10357-PC 55..316 76..323 292 30.3 Plus
CG6295-PA 338 CG6295-PA 64..337 44..323 281 32.2 Plus
CG5966-PA 540 CG5966-PA 68..396 34..322 272 28.7 Plus
CG4582-PA 432 CG4582-PA 140..413 52..320 271 29.9 Plus
CG6847-PB 1000 CG6847-PB 190..482 74..344 270 30.8 Plus
CG6847-PA 1000 CG6847-PA 190..482 74..344 270 30.8 Plus
CG6296-PA 676 CG6296-PA 63..346 36..325 257 28.5 Plus
CG6675-PC 386 CG6675-PC 143..384 70..323 254 32 Plus
CG6675-PB 390 CG6675-PB 147..388 70..323 254 32 Plus
CG5162-PB 411 CG5162-PB 126..369 69..320 254 30.9 Plus
CG5162-PA 411 CG5162-PA 126..369 69..320 254 30.9 Plus
CG18258-PA 468 CG18258-PA 149..449 22..322 254 29.2 Plus
CG4267-PB 374 CG4267-PB 92..354 61..323 252 30.2 Plus
CG4267-PA 374 CG4267-PA 92..354 61..323 252 30.2 Plus
CG5966-PB 436 CG5966-PB 3..292 63..322 252 28.2 Plus
CG6277-PA 341 CG6277-PA 68..337 44..320 251 29.6 Plus
CG5665-PB 376 CG5665-PB 149..358 105..322 250 31.7 Plus
CG6271-PA 341 CG6271-PA 68..337 44..320 243 28.9 Plus
CG17292-PD 340 CG17292-PD 13..323 32..335 242 27.7 Plus
CG17292-PC 340 CG17292-PC 13..323 32..335 242 27.7 Plus
CG17292-PB 340 CG17292-PB 13..323 32..335 242 27.7 Plus
CG17292-PA 340 CG17292-PA 13..323 32..335 242 27.7 Plus
CG6431-PC 351 CG6431-PC 54..291 37..276 242 28.8 Plus
CG6431-PB 346 CG6431-PB 51..286 39..276 237 29 Plus
CG1986-PB 404 CG1986-PB 91..345 72..320 231 28.7 Plus
CG1986-PA 404 CG1986-PA 91..345 72..320 231 28.7 Plus
CG10116-PA 289 CG10116-PA 24..282 46..323 226 29 Plus
CG5665-PC 395 CG5665-PC 149..377 105..322 220 29.2 Plus
sxe2-PB 387 CG4979-PB 100..318 70..288 215 29 Plus
sxe2-PA 387 CG4979-PA 100..318 70..288 215 29 Plus
CG17192-PA 337 CG17192-PA 60..335 41..322 212 27.6 Plus
CG17191-PA 337 CG17191-PA 63..335 44..322 206 29.2 Plus
CG6283-PA 339 CG6283-PA 57..337 36..322 205 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16996-PA 648 GI16996-PA 34..312 30..309 1116 70.4 Plus
Dmoj\GI16995-PA 380 GI16995-PA 1..321 1..327 724 48.5 Plus
Dmoj\GI17384-PA 365 GI17384-PA 3..307 7..336 578 39.9 Plus
Dmoj\GI17858-PA 371 GI17858-PA 57..353 28..339 510 39.4 Plus
Dmoj\GI16996-PA 648 GI16996-PA 325..632 20..323 452 34.4 Plus
Dmoj\GI17178-PA 468 GI17178-PA 58..348 37..328 430 37.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26468-PA 383 GL26468-PA 3..321 7..329 741 49.1 Plus
Dper\GL26469-PA 348 GL26469-PA 29..332 24..323 430 33.5 Plus
Dper\GL19328-PA 392 GL19328-PA 12..272 60..328 386 36.7 Plus
Dper\GL18504-PA 392 GL18504-PA 115..385 41..323 297 30.7 Plus
Dper\GL14903-PA 546 GL14903-PA 68..399 34..322 295 28.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28876-PA 340 GA28876-PA 19..340 16..337 1459 79.8 Plus
Dpse\GA28874-PA 383 GA28874-PA 3..321 7..329 742 49.1 Plus
Dpse\GA15027-PA 348 GA15027-PA 29..332 24..323 430 33.5 Plus
Dpse\GA12169-PA 474 GA12169-PA 62..354 33..328 406 35.6 Plus
Dpse\GA19265-PA 546 GA19265-PA 68..399 34..322 291 28.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18228-PA 344 GM18228-PA 1..344 1..344 1817 97.4 Plus
Dsec\GM12077-PA 172 GM12077-PA 1..167 139..305 892 98.2 Plus
Dsec\GM18227-PA 389 GM18227-PA 30..339 32..343 728 49.2 Plus
Dsec\GM18032-PA 324 GM18032-PA 19..297 39..323 533 41.5 Plus
Dsec\GM18230-PA 348 GM18230-PA 29..332 24..323 439 34.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22835-PA 309 GD22835-PA 1..305 1..305 1631 97.7 Plus
Dsim\GD17823-PA 389 GD17823-PA 1..322 3..329 733 48 Plus
Dsim\GD22660-PA 316 GD22660-PA 11..289 39..323 534 41.5 Plus
Dsim\GD21893-PA 484 GD21893-PA 70..359 37..328 411 35.4 Plus
Dsim\GD11231-PA 394 GD11231-PA 34..334 25..322 368 35.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24204-PA 336 GJ24204-PA 10..336 7..335 1320 72.6 Plus
Dvir\GJ24193-PA 384 GJ24193-PA 32..321 29..323 717 49.8 Plus
Dvir\GJ17356-PA 345 GJ17356-PA 26..313 33..323 514 39.3 Plus
Dvir\GJ24215-PA 350 GJ24215-PA 27..334 20..323 450 34.1 Plus
Dvir\GJ22109-PA 446 GJ22109-PA 37..327 37..328 434 36.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23737-PA 319 GK23737-PA 21..319 16..334 1255 71.2 Plus
Dwil\GK23736-PA 521 GK23736-PA 172..467 29..329 736 49.8 Plus
Dwil\GK23738-PA 339 GK23738-PA 20..323 24..323 428 34.5 Plus
Dwil\GK18152-PA 428 GK18152-PA 19..308 37..328 425 35.8 Plus
Dwil\GK22029-PA 364 GK22029-PA 12..315 25..322 335 33.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15108-PA 609 GE15108-PA 332..609 48..344 1399 88.9 Plus
Dyak\GE15105-PA 370 GE15105-PA 3..343 5..340 704 46.2 Plus
Dyak\GE15108-PA 609 GE15108-PA 11..311 49..343 661 47.7 Plus
Dyak\GE19008-PA 393 GE19008-PA 54..366 2..323 564 40.4 Plus
Dyak\GE15114-PA 348 GE15114-PA 29..332 24..323 438 34.2 Plus
Dyak\GE13160-PA 483 GE13160-PA 70..359 37..328 410 35.4 Plus

RT07891.hyp Sequence

Translation from 1 to 1032

> RT07891.hyp
MSIYSTLILLLTIVSGFCKGENHTRGWLPEFCVVGEQKCPNSRVSFWLYT
NQTRDDPIQLDPLNPQKDVFQPRLPLKILIHGFIGNRNLTPNLEVRDVLL
QTQPINVISVDYGTLVRWPCYYPWAVNNAPIVSECLAQMINNLISAGISR
REDIHLIGFSLGAQVAGMVANYVSQPLARITGLDPAGPGFMMQPSLQQKL
DASDADFVDIIHTDPFFFSMLPPMGHADFYPNLDQLNQRGCSYISNWRFY
NCNHYRAAVYYGESIISERGFWAQQCGGWFDFFSQRCSHYSNMPNTQMGY
FVSEDASGSYFLTTHEVAPFAKGPLVEVEFDVSELRNFTEIELR

RT07891.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG34448-PA 344 CG34448-PA 1..344 1..344 1864 100 Plus
CG34447-PA 389 CG34447-PA 3..322 5..329 730 47.7 Plus
CG34447-PB 389 CG34447-PB 3..322 5..329 730 47.7 Plus
CG14034-PC 338 CG14034-PC 33..311 39..323 531 41.8 Plus
CG14034-PB 338 CG14034-PB 33..311 39..323 531 41.8 Plus