BDGP Sequence Production Resources |
Search the DGRC for RT07973
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 79 |
Well: | 73 |
Vector: | pCR2.1 |
Associated Gene/Transcript | CG34444-RA |
Protein status: | RT07973.pep: gold |
Sequenced Size: | 888 |
888 bp assembled on 2010-07-19
GenBank Submission: BT124847.2
> RT07973.complete ATGGATGGTCGTGGAACATTCCTAGTTCTTCTGATTTTTGGTTTTTTCAG GAACTCACAGGAAAAATTTGTTTGGTGTACGGGTGGAGCATCTTCGCTTT TTGTGGCCATCGCTTTGCCTTTGGACTTACGGTTTGAAAAAGCCTTTTTG TCCTATAATTTTGAAGTGTCCTACGATTTACCAAGATCGTGGAAACAGAA ACCACCGTTTTTGCGACATGGAAATGGCACGAATGATGAAAGTTTACTGA GTGATCACCATGGCCATCATCAGAATGATGATTTCGTTTACGATGACTAT TACGATGATGATCAAAACTCTGGTAATAAGCACAAACACAAACACCATCC ACATCATCATGATAAGAAAAAGAAGAAGAGTAAGCCTAAGCCCGGTTCTG TTATCAAGCCACAGAAAAATAAGCCCAAGCATAAGCATAAGAAAAAGCAC AAGTCAAAGCCAAAGCCACCGCCAGAAGTGGATGAGGATGACTACAAGGA CTTCTTTCAGGGATTTCCCTTGGATGGCATGGGTGAATCTGTGGGCAGAG ATCGCCAGAGTAGGTCACTACTCTCACGCACTAAGTTCTATTATATAATC AACCATCGGTTCGAATTGCATGGATTAGGCGCAGGCGACAGCTGTTTATT AAGACTGATTTGTGAGGCAAATAGCTACCAATTGGGAGATCTCAATGGTG TGCTAGGCAGCTTAATACATGTAATGTTCAGTCCCAGCAGCTCTCGGTAT GAGGAATTACCTAAGCGTTACTACATCGCAGAATTGGATGGTCGGAATGG CAACTGCGGAGGCTATCGAGTGCAATGTGAGCATAGTGTTCTCGACATGA TCACGCAACCTGTGAAAAATAAAAACAAAATGCACTAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG34444-RA | 996 | CG34444-RA | 102..989 | 1..888 | 4440 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 10256888..10257293 | 213..618 | 2030 | 100 | Plus |
chr2R | 21145070 | chr2R | 10257353..10257621 | 618..886 | 1345 | 100 | Plus |
chr2R | 21145070 | chr2R | 10256707..10256824 | 96..213 | 590 | 100 | Plus |
chr2R | 21145070 | chr2R | 10256546..10256641 | 1..96 | 465 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 14369584..14369989 | 213..618 | 2030 | 100 | Plus |
2R | 25286936 | 2R | 14370049..14370319 | 618..888 | 1355 | 100 | Plus |
2R | 25286936 | 2R | 14369403..14369520 | 96..213 | 590 | 100 | Plus |
2R | 25286936 | 2R | 14369242..14369337 | 1..96 | 480 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 14370783..14371188 | 213..618 | 2030 | 100 | Plus |
2R | 25260384 | 2R | 14371248..14371518 | 618..888 | 1355 | 100 | Plus |
2R | 25260384 | 2R | 14370602..14370719 | 96..213 | 590 | 100 | Plus |
2R | 25260384 | 2R | 14370441..14370536 | 1..96 | 480 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 10256546..10256641 | 1..96 | 98 | -> | Plus |
chr2R | 10257353..10257623 | 618..888 | 100 | Plus | |
chr2R | 10256708..10256824 | 97..213 | 100 | -> | Plus |
chr2R | 10256889..10257292 | 214..617 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34444-RA | 1..886 | 1..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34444-RA | 1..888 | 1..888 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34444-RA | 1..888 | 1..888 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34444-RA | 1..888 | 1..888 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34444-RA | 1..886 | 1..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34444-RA | 1..888 | 1..888 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34444-RA | 26..913 | 1..888 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34444-RA | 26..913 | 1..888 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14370049..14370319 | 618..888 | 100 | Plus | |
2R | 14369242..14369337 | 1..96 | 100 | -> | Plus |
2R | 14369404..14369520 | 97..213 | 100 | -> | Plus |
2R | 14369585..14369988 | 214..617 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14370049..14370319 | 618..888 | 100 | Plus | |
2R | 14369242..14369337 | 1..96 | 100 | -> | Plus |
2R | 14369404..14369520 | 97..213 | 100 | -> | Plus |
2R | 14369585..14369988 | 214..617 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14370049..14370319 | 618..888 | 100 | Plus | |
2R | 14369242..14369337 | 1..96 | 100 | -> | Plus |
2R | 14369404..14369520 | 97..213 | 100 | -> | Plus |
2R | 14369585..14369988 | 214..617 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 10257554..10257824 | 618..888 | 100 | Plus | |
arm_2R | 10256747..10256842 | 1..96 | 100 | -> | Plus |
arm_2R | 10256909..10257025 | 97..213 | 100 | -> | Plus |
arm_2R | 10257090..10257493 | 214..617 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14370784..14371187 | 214..617 | 100 | -> | Plus |
2R | 14371248..14371518 | 618..888 | 100 | Plus | |
2R | 14370441..14370536 | 1..96 | 100 | -> | Plus |
2R | 14370603..14370719 | 97..213 | 100 | -> | Plus |
Translation from 0 to 887
> RT07973.pep MDGRGTFLVLLIFGFFRNSQEKFVWCTGGASSLFVAIALPLDLRFEKAFL SYNFEVSYDLPRSWKQKPPFLRHGNGTNDESLLSDHHGHHQNDDFVYDDY YDDDQNSGNKHKHKHHPHHHDKKKKKSKPKPGSVIKPQKNKPKHKHKKKH KSKPKPPPEVDEDDYKDFFQGFPLDGMGESVGRDRQSRSLLSRTKFYYII NHRFELHGLGAGDSCLLRLICEANSYQLGDLNGVLGSLIHVMFSPSSSRY EELPKRYYIAELDGRNGNCGGYRVQCEHSVLDMITQPVKNKNKMH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13499-PA | 217 | GF13499-PA | 32..190 | 155..289 | 271 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20447-PA | 189 | GG20447-PA | 32..175 | 155..288 | 279 | 43.2 | Plus |
Dere\GG20448-PA | 397 | GG20448-PA | 309..360 | 56..107 | 203 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19744-PA | 408 | GH19744-PA | 194..395 | 30..287 | 330 | 32.9 | Plus |
Dgri\GH19744-PA | 408 | GH19744-PA | 1..197 | 35..288 | 300 | 29.5 | Plus |
Dgri\GH14426-PA | 208 | GH14426-PA | 88..205 | 176..285 | 145 | 34.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG34444-PA | 295 | CG34444-PA | 1..295 | 1..295 | 1626 | 100 | Plus |
CG34442-PA | 245 | CG34442-PA | 16..228 | 12..285 | 281 | 28.4 | Plus |
CG34184-PA | 224 | CG34184-PA | 64..209 | 155..288 | 279 | 42.6 | Plus |
CG34443-PA | 239 | CG34443-PA | 119..229 | 179..290 | 277 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20278-PA | 799 | GI20278-PA | 670..788 | 162..288 | 384 | 56.7 | Plus |
Dmoj\GI20278-PA | 799 | GI20278-PA | 443..550 | 185..293 | 288 | 50.5 | Plus |
Dmoj\GI20278-PA | 799 | GI20278-PA | 92..197 | 183..289 | 278 | 48.6 | Plus |
Dmoj\GI20278-PA | 799 | GI20278-PA | 253..358 | 183..289 | 275 | 49.5 | Plus |
Dmoj\GI13557-PA | 211 | GI13557-PA | 73..208 | 160..285 | 166 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10688-PA | 298 | GL10688-PA | 3..298 | 7..295 | 734 | 56.5 | Plus |
Dper\GL10687-PA | 397 | GL10687-PA | 277..386 | 179..289 | 273 | 47.7 | Plus |
Dper\GL24802-PA | 218 | GL24802-PA | 72..217 | 160..288 | 151 | 32.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24448-PA | 298 | GA24448-PA | 3..287 | 7..288 | 737 | 58 | Plus |
Dpse\GA24447-PA | 433 | GA24447-PA | 319..422 | 185..289 | 271 | 49.5 | Plus |
Dpse\GA24447-PA | 433 | GA24447-PA | 113..219 | 183..289 | 270 | 49.1 | Plus |
Dpse\GA12769-PA | 218 | GA12769-PA | 72..217 | 160..288 | 149 | 32.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21535-PA | 479 | GM21535-PA | 310..479 | 56..223 | 381 | 74.1 | Plus |
Dsec\GM19477-PA | 187 | GM19477-PA | 69..172 | 185..288 | 275 | 50.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11043-PA | 196 | GD11043-PA | 34..181 | 155..288 | 276 | 39.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22007-PA | 262 | GJ22007-PA | 4..250 | 5..288 | 611 | 49.6 | Plus |
Dvir\GJ22006-PA | 369 | GJ22006-PA | 164..358 | 33..289 | 333 | 32.3 | Plus |
Dvir\GJ11918-PA | 215 | GJ11918-PA | 77..212 | 160..285 | 160 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21474-PA | 413 | GK21474-PA | 299..400 | 185..287 | 279 | 52.4 | Plus |
Dwil\GK21474-PA | 413 | GK21474-PA | 92..198 | 183..289 | 262 | 47.2 | Plus |
Dwil\GK16780-PA | 214 | GK16780-PA | 88..211 | 160..285 | 154 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18111-PA | 195 | GE18111-PA | 82..180 | 190..288 | 273 | 53 | Plus |
Translation from 1 to 885
> RT07973.hyp MDGRGTFLVLLIFGFFRNSQEKFVWCTGGASSLFVAIALPLDLRFEKAFL SYNFEVSYDLPRSWKQKPPFLRHGNGTNDESLLSDHHGHHQNDDFVYDDY YDDDQNSGNKHKHKHHPHHHDKKKKKSKPKPGSVIKPQKNKPKHKHKKKH KSKPKPPPEVDEDDYKDFFQGFPLDGMGESVGRDRQSRSLLSRTKFYYII NHRFELHGLGAGDSCLLRLICEANSYQLGDLNGVLGSLIHVMFSPSSSRY EELPKRYYIAELDGRNGNCGGYRVQCEHSVLDMITQPVKNKNKMH
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG34444-PA | 295 | CG34444-PA | 1..295 | 1..295 | 1626 | 100 | Plus |
CG34442-PA | 245 | CG34442-PA | 16..228 | 12..285 | 281 | 28.4 | Plus |
CG34184-PA | 224 | CG34184-PA | 64..209 | 155..288 | 279 | 42.6 | Plus |
CG34443-PA | 239 | CG34443-PA | 119..229 | 179..290 | 277 | 50 | Plus |