Clone RT08049 Report

Search the DGRC for RT08049

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:80
Well:49
Vector:pCR2.1
Associated Gene/TranscriptCG14421-RA
Protein status:RT08049.pep: gold
Sequenced Size:717

Clone Sequence Records

RT08049.complete Sequence

717 bp assembled on 2011-03-21

GenBank Submission: BT126176.1

> RT08049.complete
ATGCATTTGTTGAAGGGACTTTTGATCGTGGCGTGCCTGGCTGCCTTTGC
CAGCGCCAAGCCCCAGAACTTCCAGATCTTCGGTCGCCAGCGAGATGAGC
CCGCCGCCCAAGGACGCCTGAGCGCCACTCAGCTGACCGATCTGTTAAAC
AGCCTGAAGGGCAGCAGCTCCTCCACTACAGCGGCTCCCACTACCACCAC
CTTGCCATCCACCTCCACGGTAACGACCTCGCCAACTGGACCCACCACCT
CAACCGGCACATCGACCACCACAACCACACCCACCACCACCTCACCCACT
GGAACCACCACCGCTCGCCAATTGGAGCCGCTCGATGATCAGGAGGACGA
CGACGAGGAGGAGCAACAATTGGGCCACCATCAGCGCTTCCAGCTGGAGG
ATCAGAACGATGACGAGGAGGAGCATACCCAGGTGGCCCGCTCGCAGGCC
AACCGCCGTCGCCAGGTGAACGCCCGCCGTCAGCGCCAGCGTCTGCAGCA
GAAGTACCGCCGCCGCCAGCAGCAGCAGCGTCGCCGTCGCCAGCAGCAGC
AGCAGAAGCGCCGCCAGCAGCAGAAGCGTCGCCAGCAGCAGCGCCGCAGG
AGGCAGCAGAACCAGAGGCGCCGCCAGCGCCGTAACCGCCGCACCAACAT
GCGCCTGGTCAGCCGCTTCCGCCAGAGCACCCCCAACCGGAACCGCGTCA
TCCGCATCGGCGCCTAA

RT08049.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2835395..2836055 55..715 3305 100 Plus
chrX 22417052 chrX 2835269..2835323 1..55 275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2941608..2942270 55..717 3315 100 Plus
X 23542271 X 2941482..2941536 1..55 275 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2949706..2950368 55..717 3315 100 Plus
X 23527363 X 2949580..2949634 1..55 275 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:38:33 has no hits.

RT08049.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:39:31 Download gff for RT08049.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2835933..2836057 593..717 100   Plus
chrX 2835269..2835323 1..55 100 -> Plus
chrX 2835396..2835509 56..169 100 == Plus
chrX 2835655..2835880 315..540 100 == Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-22 17:53:35 Download gff for RT08049.complete
Subject Subject Range Query Range Percent Splice Strand
CG14421-RA 1..717 1..717 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:58:34 Download gff for RT08049.complete
Subject Subject Range Query Range Percent Splice Strand
CG14421-RA 1..717 1..717 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:30:48 Download gff for RT08049.complete
Subject Subject Range Query Range Percent Splice Strand
CG14421-RA 1..717 1..717 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-22 17:53:35 Download gff for RT08049.complete
Subject Subject Range Query Range Percent Splice Strand
CG14421-RA 1..717 1..717 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:58:34 Download gff for RT08049.complete
Subject Subject Range Query Range Percent Splice Strand
CG14421-RA 75..791 1..717 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:48 Download gff for RT08049.complete
Subject Subject Range Query Range Percent Splice Strand
CG14421-RA 75..791 1..717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:39:31 Download gff for RT08049.complete
Subject Subject Range Query Range Percent Splice Strand
X 2941482..2941536 1..55 100 -> Plus
X 2941609..2942270 56..717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:39:31 Download gff for RT08049.complete
Subject Subject Range Query Range Percent Splice Strand
X 2941482..2941536 1..55 100 -> Plus
X 2941609..2942270 56..717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:39:31 Download gff for RT08049.complete
Subject Subject Range Query Range Percent Splice Strand
X 2941482..2941536 1..55 100 -> Plus
X 2941609..2942270 56..717 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:58:34 Download gff for RT08049.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2835515..2835569 1..55 100 -> Plus
arm_X 2835642..2836303 56..717 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:02:40 Download gff for RT08049.complete
Subject Subject Range Query Range Percent Splice Strand
X 2949707..2950368 56..717 100   Plus
X 2949580..2949634 1..55 100 -> Plus

RT08049.pep Sequence

Translation from 0 to 716

> RT08049.pep
MHLLKGLLIVACLAAFASAKPQNFQIFGRQRDEPAAQGRLSATQLTDLLN
SLKGSSSSTTAAPTTTTLPSTSTVTTSPTGPTTSTGTSTTTTTPTTTSPT
GTTTARQLEPLDDQEDDDEEEQQLGHHQRFQLEDQNDDEEEHTQVARSQA
NRRRQVNARRQRQRLQQKYRRRQQQQRRRRQQQQQKRRQQQKRRQQQRRR
RQQNQRRRQRRNRRTNMRLVSRFRQSTPNRNRVIRIGA*

RT08049.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22465-PA 243 GF22465-PA 1..53 1..53 266 84.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18638-PA 236 GG18638-PA 1..236 1..238 365 77.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG14421-PA 238 CG14421-PA 1..238 1..238 1204 100 Plus
CG14420-PA 293 CG14420-PA 1..272 1..232 349 34.1 Plus
CG14422-PA 294 CG14422-PA 66..293 61..232 326 41.2 Plus
ImpE1-PC 1616 CG32356-PC 203..348 56..197 193 32.2 Plus
ImpE1-PA 1616 CG32356-PA 203..348 56..197 193 32.2 Plus
CG14453-PA 133 CG14453-PA 28..131 51..206 184 34 Plus
pyr-PB 766 CG13194-PB 173..316 56..202 183 32.9 Plus
CG14418-PB 284 CG14418-PB 116..228 112..231 179 36.7 Plus
CG14418-PA 327 CG14418-PA 159..271 112..231 179 36.7 Plus
CG2839-PA 826 CG2839-PA 476..611 106..232 176 27.7 Plus
Glt-PD 1026 CG9280-PD 595..761 58..212 175 26.2 Plus
Glt-PA 1026 CG9280-PA 595..761 58..212 175 26.2 Plus
CG2839-PA 826 CG2839-PA 539..660 106..225 173 25.4 Plus
CG14419-PA 195 CG14419-PA 6..195 3..204 171 25.8 Plus
CG14416-PA 258 CG14416-PA 76..230 67..225 170 28.6 Plus
Mmp2-PC 606 CG1794-PC 147..336 68..228 170 28.4 Plus
Mmp2-PD 650 CG1794-PD 191..380 68..228 170 28.4 Plus
Mmp2-PB 758 CG1794-PB 299..488 68..228 170 28.4 Plus
CG2839-PA 826 CG2839-PA 558..677 113..232 169 24.2 Plus
CG2839-PA 826 CG2839-PA 518..641 106..232 168 26.8 Plus
CG2839-PA 826 CG2839-PA 529..642 114..225 167 23.7 Plus
CG2839-PA 826 CG2839-PA 314..446 106..235 165 22.6 Plus
CG2839-PA 826 CG2839-PA 563..677 106..218 164 24.3 Plus
CG2839-PA 826 CG2839-PA 557..678 106..225 162 23.8 Plus
CG3546-PA 630 CG3546-PA 411..546 82..208 161 30.9 Plus
CG6026-PB 1555 CG6026-PB 309..500 56..225 161 25.5 Plus
CG2839-PA 826 CG2839-PA 593..714 106..225 159 22.1 Plus
CG2839-PA 826 CG2839-PA 386..507 114..232 158 23.6 Plus
CG44085-PH 756 CG44085-PH 214..447 34..238 158 25.3 Plus
CG44085-PL 833 CG44085-PL 291..524 34..238 158 25.3 Plus
CG44085-PI 833 CG44085-PI 291..524 34..238 158 25.3 Plus
CG44085-PC 836 CG44085-PC 291..524 34..238 158 25.3 Plus
CG44085-PF 902 CG44085-PF 214..447 34..238 158 25.3 Plus
CG44085-PD 918 CG44085-PD 214..447 34..238 158 25.3 Plus
CG44085-PG 942 CG44085-PG 214..447 34..238 158 25.3 Plus
CG44085-PK 979 CG44085-PK 291..524 34..238 158 25.3 Plus
CG44085-PJ 979 CG44085-PJ 291..524 34..238 158 25.3 Plus
CG44085-PN 1007 CG44085-PN 291..524 34..238 158 25.3 Plus
CG44085-PP 2246 CG44085-PP 187..420 34..238 158 25.3 Plus
CG2839-PA 826 CG2839-PA 508..623 113..230 157 28.3 Plus
CG2839-PA 826 CG2839-PA 471..587 119..232 156 25.6 Plus
CG2839-PA 826 CG2839-PA 587..713 106..232 156 20.5 Plus
CG14418-PB 284 CG14418-PB 123..279 106..233 155 30.1 Plus
CG14418-PA 327 CG14418-PA 166..322 106..233 155 30.1 Plus
CG2839-PA 826 CG2839-PA 507..624 114..225 155 25.4 Plus
Glt-PD 1026 CG9280-PD 594..724 81..213 155 27.8 Plus
Glt-PA 1026 CG9280-PA 594..724 81..213 155 27.8 Plus
CG2839-PA 826 CG2839-PA 420..541 113..230 154 26.4 Plus
CG2839-PA 826 CG2839-PA 605..718 106..218 154 22.8 Plus
CG44085-PM 864 CG44085-PM 227..409 63..238 154 25.1 Plus
CG44085-PO 2381 CG44085-PO 227..409 63..238 154 25.1 Plus
vn-PC 618 CG10491-PC 233..323 132..218 153 37.4 Plus
vn-PA 623 CG10491-PA 233..323 132..218 153 37.4 Plus
Smr-PF 3601 CG4013-PF 4..210 51..219 153 20.8 Plus
Smr-PE 3601 CG4013-PE 4..210 51..219 153 20.8 Plus
Smr-PD 3601 CG4013-PD 4..210 51..219 153 20.8 Plus
CG2839-PA 826 CG2839-PA 360..495 106..232 152 22.1 Plus
CG32767-PG 1280 CG32767-PG 386..486 131..231 152 33.7 Plus
CG32767-PH 1281 CG32767-PH 386..486 131..231 152 33.7 Plus
CG32767-PF 1281 CG32767-PF 386..486 131..231 152 33.7 Plus
CG32767-PE 1281 CG32767-PE 386..486 131..231 152 33.7 Plus
CG32767-PD 1281 CG32767-PD 386..486 131..231 152 33.7 Plus
CG32767-PC 1281 CG32767-PC 386..486 131..231 152 33.7 Plus
CG2839-PA 826 CG2839-PA 308..424 106..218 151 22.2 Plus
Ptip-PA 2294 CG32133-PA 194..260 139..210 151 40.3 Plus
CG2839-PA 826 CG2839-PA 408..525 114..225 150 23.7 Plus
CG2839-PA 826 CG2839-PA 569..689 106..218 149 23.1 Plus
CG2839-PA 826 CG2839-PA 623..730 106..211 149 20.4 Plus
CG12491-PA 157 CG12491-PA 37..156 55..199 149 26.2 Plus
CG34105-PA 157 CG34105-PA 37..156 55..199 149 26.2 Plus
CG14418-PB 284 CG14418-PB 93..213 107..231 147 33.6 Plus
CG14418-PA 327 CG14418-PA 136..256 107..231 147 33.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19257-PA 238 GM19257-PA 1..238 1..238 471 93.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24740-PA 238 GD24740-PA 1..238 1..238 521 94.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25532-PA 256 GK25532-PA 1..100 1..90 158 53 Plus

RT08049.hyp Sequence

Translation from 1 to 716

> RT08049.hyp
MHLLKGLLIVACLAAFASAKPQNFQIFGRQRDEPAAQGRLSATQLTDLLN
SLKGSSSSTTAAPTTTTLPSTSTVTTSPTGPTTSTGTSTTTTTPTTTSPT
GTTTARQLEPLDDQEDDDEEEQQLGHHQRFQLEDQNDDEEEHTQVARSQA
NRRRQVNARRQRQRLQQKYRRRQQQQRRRRQQQQQKRRQQQKRRQQQRRR
RQQNQRRRQRRNRRTNMRLVSRFRQSTPNRNRVIRIGA*

RT08049.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14421-PA 238 CG14421-PA 1..238 1..238 1204 100 Plus
CG14420-PA 293 CG14420-PA 1..272 1..232 349 34.1 Plus
CG14422-PA 294 CG14422-PA 66..293 61..232 326 41.2 Plus
ImpE1-PC 1616 CG32356-PC 203..348 56..197 193 32.2 Plus
ImpE1-PA 1616 CG32356-PA 203..348 56..197 193 32.2 Plus