Clone Sequence Records
RT08049.complete Sequence
717 bp assembled on 2011-03-21
GenBank Submission: BT126176.1
> RT08049.complete
ATGCATTTGTTGAAGGGACTTTTGATCGTGGCGTGCCTGGCTGCCTTTGC
CAGCGCCAAGCCCCAGAACTTCCAGATCTTCGGTCGCCAGCGAGATGAGC
CCGCCGCCCAAGGACGCCTGAGCGCCACTCAGCTGACCGATCTGTTAAAC
AGCCTGAAGGGCAGCAGCTCCTCCACTACAGCGGCTCCCACTACCACCAC
CTTGCCATCCACCTCCACGGTAACGACCTCGCCAACTGGACCCACCACCT
CAACCGGCACATCGACCACCACAACCACACCCACCACCACCTCACCCACT
GGAACCACCACCGCTCGCCAATTGGAGCCGCTCGATGATCAGGAGGACGA
CGACGAGGAGGAGCAACAATTGGGCCACCATCAGCGCTTCCAGCTGGAGG
ATCAGAACGATGACGAGGAGGAGCATACCCAGGTGGCCCGCTCGCAGGCC
AACCGCCGTCGCCAGGTGAACGCCCGCCGTCAGCGCCAGCGTCTGCAGCA
GAAGTACCGCCGCCGCCAGCAGCAGCAGCGTCGCCGTCGCCAGCAGCAGC
AGCAGAAGCGCCGCCAGCAGCAGAAGCGTCGCCAGCAGCAGCGCCGCAGG
AGGCAGCAGAACCAGAGGCGCCGCCAGCGCCGTAACCGCCGCACCAACAT
GCGCCTGGTCAGCCGCTTCCGCCAGAGCACCCCCAACCGGAACCGCGTCA
TCCGCATCGGCGCCTAA
RT08049.complete Blast Records
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 2835395..2836055 | 55..715 | 3305 | 100 | Plus |
chrX | 22417052 | chrX | 2835269..2835323 | 1..55 | 275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2941608..2942270 | 55..717 | 3315 | 100 | Plus |
X | 23542271 | X | 2941482..2941536 | 1..55 | 275 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 2949706..2950368 | 55..717 | 3315 | 100 | Plus |
X | 23527363 | X | 2949580..2949634 | 1..55 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 22:38:33 has no hits.
RT08049.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:39:31 Download gff for
RT08049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 2835933..2836057 | 593..717 | 100 | | Plus |
chrX | 2835269..2835323 | 1..55 | 100 | -> | Plus |
chrX | 2835396..2835509 | 56..169 | 100 | == | Plus |
chrX | 2835655..2835880 | 315..540 | 100 | == | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-22 17:53:35 Download gff for
RT08049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14421-RA | 1..717 | 1..717 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:58:34 Download gff for
RT08049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14421-RA | 1..717 | 1..717 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:30:48 Download gff for
RT08049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14421-RA | 1..717 | 1..717 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-22 17:53:35 Download gff for
RT08049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14421-RA | 1..717 | 1..717 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:58:34 Download gff for
RT08049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14421-RA | 75..791 | 1..717 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:48 Download gff for
RT08049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14421-RA | 75..791 | 1..717 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:39:31 Download gff for
RT08049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2941482..2941536 | 1..55 | 100 | -> | Plus |
X | 2941609..2942270 | 56..717 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:39:31 Download gff for
RT08049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2941482..2941536 | 1..55 | 100 | -> | Plus |
X | 2941609..2942270 | 56..717 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:39:31 Download gff for
RT08049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2941482..2941536 | 1..55 | 100 | -> | Plus |
X | 2941609..2942270 | 56..717 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:58:34 Download gff for
RT08049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2835515..2835569 | 1..55 | 100 | -> | Plus |
arm_X | 2835642..2836303 | 56..717 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:02:40 Download gff for
RT08049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2949707..2950368 | 56..717 | 100 | | Plus |
X | 2949580..2949634 | 1..55 | 100 | -> | Plus |
RT08049.pep Sequence
Translation from 0 to 716
> RT08049.pep
MHLLKGLLIVACLAAFASAKPQNFQIFGRQRDEPAAQGRLSATQLTDLLN
SLKGSSSSTTAAPTTTTLPSTSTVTTSPTGPTTSTGTSTTTTTPTTTSPT
GTTTARQLEPLDDQEDDDEEEQQLGHHQRFQLEDQNDDEEEHTQVARSQA
NRRRQVNARRQRQRLQQKYRRRQQQQRRRRQQQQQKRRQQQKRRQQQRRR
RQQNQRRRQRRNRRTNMRLVSRFRQSTPNRNRVIRIGA*
RT08049.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:32:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF22465-PA | 243 | GF22465-PA | 1..53 | 1..53 | 266 | 84.9 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG18638-PA | 236 | GG18638-PA | 1..236 | 1..238 | 365 | 77.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14421-PA | 238 | CG14421-PA | 1..238 | 1..238 | 1204 | 100 | Plus |
CG14420-PA | 293 | CG14420-PA | 1..272 | 1..232 | 349 | 34.1 | Plus |
CG14422-PA | 294 | CG14422-PA | 66..293 | 61..232 | 326 | 41.2 | Plus |
ImpE1-PC | 1616 | CG32356-PC | 203..348 | 56..197 | 193 | 32.2 | Plus |
ImpE1-PA | 1616 | CG32356-PA | 203..348 | 56..197 | 193 | 32.2 | Plus |
CG14453-PA | 133 | CG14453-PA | 28..131 | 51..206 | 184 | 34 | Plus |
pyr-PB | 766 | CG13194-PB | 173..316 | 56..202 | 183 | 32.9 | Plus |
CG14418-PB | 284 | CG14418-PB | 116..228 | 112..231 | 179 | 36.7 | Plus |
CG14418-PA | 327 | CG14418-PA | 159..271 | 112..231 | 179 | 36.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 476..611 | 106..232 | 176 | 27.7 | Plus |
Glt-PD | 1026 | CG9280-PD | 595..761 | 58..212 | 175 | 26.2 | Plus |
Glt-PA | 1026 | CG9280-PA | 595..761 | 58..212 | 175 | 26.2 | Plus |
CG2839-PA | 826 | CG2839-PA | 539..660 | 106..225 | 173 | 25.4 | Plus |
CG14419-PA | 195 | CG14419-PA | 6..195 | 3..204 | 171 | 25.8 | Plus |
CG14416-PA | 258 | CG14416-PA | 76..230 | 67..225 | 170 | 28.6 | Plus |
Mmp2-PC | 606 | CG1794-PC | 147..336 | 68..228 | 170 | 28.4 | Plus |
Mmp2-PD | 650 | CG1794-PD | 191..380 | 68..228 | 170 | 28.4 | Plus |
Mmp2-PB | 758 | CG1794-PB | 299..488 | 68..228 | 170 | 28.4 | Plus |
CG2839-PA | 826 | CG2839-PA | 558..677 | 113..232 | 169 | 24.2 | Plus |
CG2839-PA | 826 | CG2839-PA | 518..641 | 106..232 | 168 | 26.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 529..642 | 114..225 | 167 | 23.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 314..446 | 106..235 | 165 | 22.6 | Plus |
CG2839-PA | 826 | CG2839-PA | 563..677 | 106..218 | 164 | 24.3 | Plus |
CG2839-PA | 826 | CG2839-PA | 557..678 | 106..225 | 162 | 23.8 | Plus |
CG3546-PA | 630 | CG3546-PA | 411..546 | 82..208 | 161 | 30.9 | Plus |
CG6026-PB | 1555 | CG6026-PB | 309..500 | 56..225 | 161 | 25.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 593..714 | 106..225 | 159 | 22.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 386..507 | 114..232 | 158 | 23.6 | Plus |
CG44085-PH | 756 | CG44085-PH | 214..447 | 34..238 | 158 | 25.3 | Plus |
CG44085-PL | 833 | CG44085-PL | 291..524 | 34..238 | 158 | 25.3 | Plus |
CG44085-PI | 833 | CG44085-PI | 291..524 | 34..238 | 158 | 25.3 | Plus |
CG44085-PC | 836 | CG44085-PC | 291..524 | 34..238 | 158 | 25.3 | Plus |
CG44085-PF | 902 | CG44085-PF | 214..447 | 34..238 | 158 | 25.3 | Plus |
CG44085-PD | 918 | CG44085-PD | 214..447 | 34..238 | 158 | 25.3 | Plus |
CG44085-PG | 942 | CG44085-PG | 214..447 | 34..238 | 158 | 25.3 | Plus |
CG44085-PK | 979 | CG44085-PK | 291..524 | 34..238 | 158 | 25.3 | Plus |
CG44085-PJ | 979 | CG44085-PJ | 291..524 | 34..238 | 158 | 25.3 | Plus |
CG44085-PN | 1007 | CG44085-PN | 291..524 | 34..238 | 158 | 25.3 | Plus |
CG44085-PP | 2246 | CG44085-PP | 187..420 | 34..238 | 158 | 25.3 | Plus |
CG2839-PA | 826 | CG2839-PA | 508..623 | 113..230 | 157 | 28.3 | Plus |
CG2839-PA | 826 | CG2839-PA | 471..587 | 119..232 | 156 | 25.6 | Plus |
CG2839-PA | 826 | CG2839-PA | 587..713 | 106..232 | 156 | 20.5 | Plus |
CG14418-PB | 284 | CG14418-PB | 123..279 | 106..233 | 155 | 30.1 | Plus |
CG14418-PA | 327 | CG14418-PA | 166..322 | 106..233 | 155 | 30.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 507..624 | 114..225 | 155 | 25.4 | Plus |
Glt-PD | 1026 | CG9280-PD | 594..724 | 81..213 | 155 | 27.8 | Plus |
Glt-PA | 1026 | CG9280-PA | 594..724 | 81..213 | 155 | 27.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 420..541 | 113..230 | 154 | 26.4 | Plus |
CG2839-PA | 826 | CG2839-PA | 605..718 | 106..218 | 154 | 22.8 | Plus |
CG44085-PM | 864 | CG44085-PM | 227..409 | 63..238 | 154 | 25.1 | Plus |
CG44085-PO | 2381 | CG44085-PO | 227..409 | 63..238 | 154 | 25.1 | Plus |
vn-PC | 618 | CG10491-PC | 233..323 | 132..218 | 153 | 37.4 | Plus |
vn-PA | 623 | CG10491-PA | 233..323 | 132..218 | 153 | 37.4 | Plus |
Smr-PF | 3601 | CG4013-PF | 4..210 | 51..219 | 153 | 20.8 | Plus |
Smr-PE | 3601 | CG4013-PE | 4..210 | 51..219 | 153 | 20.8 | Plus |
Smr-PD | 3601 | CG4013-PD | 4..210 | 51..219 | 153 | 20.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 360..495 | 106..232 | 152 | 22.1 | Plus |
CG32767-PG | 1280 | CG32767-PG | 386..486 | 131..231 | 152 | 33.7 | Plus |
CG32767-PH | 1281 | CG32767-PH | 386..486 | 131..231 | 152 | 33.7 | Plus |
CG32767-PF | 1281 | CG32767-PF | 386..486 | 131..231 | 152 | 33.7 | Plus |
CG32767-PE | 1281 | CG32767-PE | 386..486 | 131..231 | 152 | 33.7 | Plus |
CG32767-PD | 1281 | CG32767-PD | 386..486 | 131..231 | 152 | 33.7 | Plus |
CG32767-PC | 1281 | CG32767-PC | 386..486 | 131..231 | 152 | 33.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 308..424 | 106..218 | 151 | 22.2 | Plus |
Ptip-PA | 2294 | CG32133-PA | 194..260 | 139..210 | 151 | 40.3 | Plus |
CG2839-PA | 826 | CG2839-PA | 408..525 | 114..225 | 150 | 23.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 569..689 | 106..218 | 149 | 23.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 623..730 | 106..211 | 149 | 20.4 | Plus |
CG12491-PA | 157 | CG12491-PA | 37..156 | 55..199 | 149 | 26.2 | Plus |
CG34105-PA | 157 | CG34105-PA | 37..156 | 55..199 | 149 | 26.2 | Plus |
CG14418-PB | 284 | CG14418-PB | 93..213 | 107..231 | 147 | 33.6 | Plus |
CG14418-PA | 327 | CG14418-PA | 136..256 | 107..231 | 147 | 33.6 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:33:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM19257-PA | 238 | GM19257-PA | 1..238 | 1..238 | 471 | 93.3 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:33:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD24740-PA | 238 | GD24740-PA | 1..238 | 1..238 | 521 | 94.1 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK25532-PA | 256 | GK25532-PA | 1..100 | 1..90 | 158 | 53 | Plus |
RT08049.hyp Sequence
Translation from 1 to 716
> RT08049.hyp
MHLLKGLLIVACLAAFASAKPQNFQIFGRQRDEPAAQGRLSATQLTDLLN
SLKGSSSSTTAAPTTTTLPSTSTVTTSPTGPTTSTGTSTTTTTPTTTSPT
GTTTARQLEPLDDQEDDDEEEQQLGHHQRFQLEDQNDDEEEHTQVARSQA
NRRRQVNARRQRQRLQQKYRRRQQQQRRRRQQQQQKRRQQQKRRQQQRRR
RQQNQRRRQRRNRRTNMRLVSRFRQSTPNRNRVIRIGA*
RT08049.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14421-PA | 238 | CG14421-PA | 1..238 | 1..238 | 1204 | 100 | Plus |
CG14420-PA | 293 | CG14420-PA | 1..272 | 1..232 | 349 | 34.1 | Plus |
CG14422-PA | 294 | CG14422-PA | 66..293 | 61..232 | 326 | 41.2 | Plus |
ImpE1-PC | 1616 | CG32356-PC | 203..348 | 56..197 | 193 | 32.2 | Plus |
ImpE1-PA | 1616 | CG32356-PA | 203..348 | 56..197 | 193 | 32.2 | Plus |