BDGP Sequence Production Resources |
Search the DGRC for RT08066
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 80 |
Well: | 66 |
Vector: | pCR2.1 |
Associated Gene/Transcript | CG17906-RA |
Protein status: | RT08066.pep: gold |
Sequenced Size: | 828 |
828 bp assembled on 2010-04-26
GenBank Submission: BT124792.1
> RT08066.complete ATGGCTGATCCGAACGCAGAGTCCTGCTGCCAGCCCCTAAAGGAGGAGTT TCAGCGGTCAAAATTCTCGCTGCACCATGAAGATCCTGGTGTCTTCTGCC GATCACAATGGCAGAACGGAGAGCGGAATTTAATCTGGGTTCTATACCGA TGGCTTCTGGCTGCTTTCTTTGCCGCTGGAGTCATTGGCAGCATGATGCA GGATTTCAATGGCGGTCGATGGTTTATTTATCTCACGGATTGGGGATTTA CACTGTGTCTATTTACCTGCACTTACGGGGCTGTAATCGCTACTATTTAC TACTTCAATCAATCTTATTTTGCTCCCGGACATTGTGCTCTGAAAATTTA CTGGATCTCACACTACACCACTTCGGTACTATCCATGTTGATTACCACCG TCTTCTGGGCAGCTCTATCATTAACCATGCCAGAAGTGGCAGGTGAGCTT TACAACTTGTGGTGCCATGCATTCAACTCGATCTGCATGGTCTTCGACTG CTTTATGGTGGCTTATCCTAACCGTCTTATGCACTTTGTGTATCCCTTTT CGGTGGTGCTCATATTCTTGATGCATTCCCTTATTTACTATTGGGCCGGC GGAACCGACATCGACGGAAATCGCTTCATCTACTTCGCCCTGGACTGGGC TCGACCTGGTCTGGCGATTGGATTCGTTTGCGCGAGTTTGGCATTGATCT GTTGCTTTTCCCTCGTGGCCTTTGGAATTTACAGGTTGCGGATGTCAGTG TACAACTGTTGTGGCAAAAGGAAGGAGGAAGCACCAGCCTTAAAAGCTAC GCCCAATGAATCATCTCCAACTGTTTAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17906-RA | 828 | CG17906-RA | 1..828 | 1..828 | 4140 | 100 | Plus |
alien-RB | 2412 | alien-RB | 1525..1733 | 820..612 | 1045 | 100 | Minus |
alien-RB | 2412 | alien-RB | 1788..1978 | 611..421 | 940 | 99.4 | Minus |
alien-RB | 2412 | alien-RB | 2279..2412 | 322..189 | 670 | 100 | Minus |
alien-RB | 2412 | alien-RB | 2037..2139 | 424..322 | 515 | 100 | Minus |
CG9555-RA | 1574 | CG9555-RA | 617..882 | 284..549 | 355 | 75.5 | Plus |
CG9555-RA | 1574 | CG9555-RA | 361..528 | 28..195 | 345 | 80.3 | Plus |
CG9555-RA | 1574 | CG9555-RA | 949..1005 | 616..672 | 180 | 87.7 | Plus |
CG9555-RA | 1574 | CG9555-RA | 547..582 | 214..249 | 150 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 8993371..8993692 | 1..322 | 1595 | 99.7 | Plus |
chr2L | 23010047 | chr2L | 8994238..8994452 | 612..826 | 1075 | 100 | Plus |
chr2L | 23010047 | chr2L | 8993993..8994183 | 421..611 | 910 | 98.4 | Plus |
chr2L | 23010047 | chr2L | 8993832..8993931 | 322..421 | 500 | 100 | Plus |
chr2L | 23010047 | chr2L | 8991001..8991295 | 28..322 | 470 | 77.3 | Plus |
chr2L | 23010047 | chr2L | 8991759..8991883 | 425..549 | 295 | 82.4 | Plus |
chr2L | 23010047 | chr2L | 8992007..8992063 | 616..672 | 195 | 89.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8994463..8994784 | 1..322 | 1610 | 100 | Plus |
2L | 23513712 | 2L | 8995330..8995546 | 612..828 | 1085 | 100 | Plus |
2L | 23513712 | 2L | 8995085..8995275 | 421..611 | 940 | 99.5 | Plus |
2L | 23513712 | 2L | 8994924..8995026 | 322..424 | 515 | 100 | Plus |
2L | 23513712 | 2L | 8992090..8992384 | 28..322 | 440 | 76.6 | Plus |
2L | 23513712 | 2L | 8992850..8992974 | 425..549 | 265 | 80.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8994463..8994784 | 1..322 | 1610 | 100 | Plus |
2L | 23513712 | 2L | 8995330..8995546 | 612..828 | 1085 | 100 | Plus |
2L | 23513712 | 2L | 8995085..8995275 | 421..611 | 940 | 99.4 | Plus |
2L | 23513712 | 2L | 8994924..8995026 | 322..424 | 515 | 100 | Plus |
2L | 23513712 | 2L | 8992090..8992257 | 28..195 | 345 | 80.3 | Plus |
2L | 23513712 | 2L | 8992850..8992974 | 425..549 | 265 | 80.8 | Plus |
2L | 23513712 | 2L | 8993098..8993154 | 616..672 | 180 | 87.7 | Plus |
2L | 23513712 | 2L | 8992276..8992311 | 214..249 | 150 | 94.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 8993371..8993692 | 1..322 | 99 | -> | Plus |
chr2L | 8993833..8993934 | 323..424 | 99 | -> | Plus |
chr2L | 8993997..8994183 | 425..611 | 98 | -> | Plus |
chr2L | 8994238..8994454 | 612..828 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17906-RA | 1..826 | 1..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17906-RA | 1..828 | 1..828 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17906-RA | 1..828 | 1..828 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17906-RA | 1..828 | 1..828 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17906-RA | 1..826 | 1..826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17906-RA | 1..828 | 1..828 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17906-RA | 1..828 | 1..828 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17906-RA | 73..900 | 1..828 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8995089..8995275 | 425..611 | 100 | -> | Plus |
2L | 8995330..8995546 | 612..828 | 100 | Plus | |
2L | 8994463..8994784 | 1..322 | 100 | -> | Plus |
2L | 8994925..8995026 | 323..424 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8995089..8995275 | 425..611 | 100 | -> | Plus |
2L | 8995330..8995546 | 612..828 | 100 | Plus | |
2L | 8994463..8994784 | 1..322 | 100 | -> | Plus |
2L | 8994925..8995026 | 323..424 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8995089..8995275 | 425..611 | 100 | -> | Plus |
2L | 8995330..8995546 | 612..828 | 100 | Plus | |
2L | 8994463..8994784 | 1..322 | 100 | -> | Plus |
2L | 8994925..8995026 | 323..424 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 8995089..8995275 | 425..611 | 100 | -> | Plus |
arm_2L | 8995330..8995546 | 612..828 | 100 | Plus | |
arm_2L | 8994463..8994784 | 1..322 | 100 | -> | Plus |
arm_2L | 8994925..8995026 | 323..424 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8994463..8994784 | 1..322 | 100 | -> | Plus |
2L | 8994925..8995026 | 323..424 | 100 | -> | Plus |
2L | 8995089..8995275 | 425..611 | 100 | -> | Plus |
2L | 8995330..8995546 | 612..828 | 100 | Plus |
Translation from 0 to 827
> RT08066.pep MADPNAESCCQPLKEEFQRSKFSLHHEDPGVFCRSQWQNGERNLIWVLYR WLLAAFFAAGVIGSMMQDFNGGRWFIYLTDWGFTLCLFTCTYGAVIATIY YFNQSYFAPGHCALKIYWISHYTTSVLSMLITTVFWAALSLTMPEVAGEL YNLWCHAFNSICMVFDCFMVAYPNRLMHFVYPFSVVLIFLMHSLIYYWAG GTDIDGNRFIYFALDWARPGLAIGFVCASLALICCFSLVAFGIYRLRMSV YNCCGKRKEEAPALKATPNESSPTV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22686-PA | 273 | GF22686-PA | 1..271 | 1..271 | 1068 | 71.2 | Plus |
Dana\GF22683-PA | 275 | GF22683-PA | 1..275 | 1..275 | 1007 | 66.2 | Plus |
Dana\GF22137-PA | 320 | GF22137-PA | 5..276 | 7..269 | 411 | 32.6 | Plus |
Dana\GF15003-PA | 316 | GF15003-PA | 11..219 | 2..203 | 399 | 35.4 | Plus |
Dana\GF22126-PA | 275 | GF22126-PA | 5..256 | 7..247 | 394 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25323-PA | 271 | GG25323-PA | 1..271 | 1..275 | 1256 | 86.2 | Plus |
Dere\GG25322-PA | 275 | GG25322-PA | 1..275 | 1..275 | 1051 | 68.7 | Plus |
Dere\GG24041-PA | 275 | GG24041-PA | 5..256 | 7..247 | 393 | 35.3 | Plus |
Dere\GG24042-PA | 321 | GG24042-PA | 5..279 | 7..272 | 379 | 32.2 | Plus |
Dere\GG24237-PA | 219 | GG24237-PA | 11..219 | 3..204 | 346 | 36.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22258-PA | 277 | GH22258-PA | 1..274 | 1..275 | 878 | 60.4 | Plus |
Dgri\GH25087-PA | 303 | GH25087-PA | 27..300 | 1..275 | 877 | 60.4 | Plus |
Dgri\GH25119-PA | 326 | GH25119-PA | 5..279 | 7..272 | 417 | 33 | Plus |
Dgri\GH10829-PA | 272 | GH10829-PA | 22..270 | 13..256 | 373 | 31.3 | Plus |
Dgri\GH25118-PA | 276 | GH25118-PA | 5..261 | 7..252 | 338 | 32.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17906-PA | 275 | CG17906-PA | 1..275 | 1..275 | 1523 | 100 | Plus |
CG9555-PC | 275 | CG9555-PC | 1..275 | 1..275 | 1094 | 68.7 | Plus |
CG9555-PA | 275 | CG9555-PA | 1..275 | 1..275 | 1094 | 68.7 | Plus |
CG4480-PC | 272 | CG4480-PC | 23..271 | 13..256 | 496 | 36.9 | Plus |
CG4480-PB | 272 | CG4480-PB | 23..271 | 13..256 | 496 | 36.9 | Plus |
CG13101-PB | 318 | CG13101-PB | 13..264 | 12..254 | 446 | 34.6 | Plus |
CG13101-PA | 318 | CG13101-PA | 13..264 | 12..254 | 446 | 34.6 | Plus |
rost-PC | 275 | CG9552-PC | 8..256 | 10..247 | 420 | 34.5 | Plus |
rost-PB | 275 | CG9552-PB | 8..256 | 10..247 | 420 | 34.5 | Plus |
rost-PA | 275 | CG9552-PA | 8..256 | 10..247 | 420 | 34.5 | Plus |
CG43778-PD | 451 | CG43778-PD | 13..257 | 21..251 | 236 | 25.5 | Plus |
CG43778-PA | 963 | CG43778-PA | 525..769 | 21..251 | 236 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17453-PA | 274 | GI17453-PA | 1..273 | 1..272 | 831 | 57.1 | Plus |
Dmoj\GI11979-PA | 275 | GI11979-PA | 9..260 | 11..252 | 344 | 31.6 | Plus |
Dmoj\GI11990-PA | 292 | GI11990-PA | 10..263 | 11..274 | 310 | 30.5 | Plus |
Dmoj\GI17340-PA | 223 | GI17340-PA | 29..222 | 15..203 | 309 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26234-PA | 274 | GL26234-PA | 1..267 | 1..267 | 1013 | 66.7 | Plus |
Dper\GL26235-PA | 264 | GL26235-PA | 1..260 | 1..260 | 894 | 60.8 | Plus |
Dper\GL25740-PA | 273 | GL25740-PA | 11..271 | 3..256 | 457 | 36.8 | Plus |
Dper\GL25545-PA | 321 | GL25545-PA | 5..279 | 7..272 | 417 | 33.7 | Plus |
Dper\GL11487-PA | 266 | GL11487-PA | 5..256 | 7..247 | 396 | 34.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21876-PA | 274 | GA21876-PA | 1..267 | 1..267 | 1024 | 67.4 | Plus |
Dpse\GA28091-PA | 264 | GA28091-PA | 1..260 | 1..260 | 897 | 60.8 | Plus |
Dpse\GA18212-PA | 273 | GA18212-PA | 11..271 | 3..256 | 462 | 37.2 | Plus |
Dpse\GA12046-PA | 321 | GA12046-PA | 5..279 | 7..272 | 417 | 33.7 | Plus |
Dpse\GA24744-PA | 266 | GA24744-PA | 5..256 | 7..247 | 396 | 34.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17336-PA | 275 | GM17336-PA | 1..275 | 1..275 | 1440 | 97.1 | Plus |
Dsec\GM17325-PA | 275 | GM17325-PA | 1..275 | 1..275 | 1061 | 69.5 | Plus |
Dsec\GM12606-PA | 321 | GM12606-PA | 5..279 | 7..272 | 424 | 33.6 | Plus |
Dsec\GM12594-PA | 275 | GM12594-PA | 5..256 | 7..247 | 388 | 34.1 | Plus |
Dsec\GM14654-PA | 219 | GM14654-PA | 23..219 | 13..204 | 362 | 38.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23581-PA | 424 | GD23581-PA | 1..211 | 1..211 | 1080 | 93.8 | Plus |
Dsim\GD23580-PA | 275 | GD23580-PA | 1..275 | 1..275 | 1066 | 69.8 | Plus |
Dsim\GD22370-PA | 321 | GD22370-PA | 5..279 | 7..272 | 420 | 32.9 | Plus |
Dsim\GD22369-PA | 275 | GD22369-PA | 5..256 | 7..247 | 387 | 34.1 | Plus |
Dsim\GD21983-PA | 219 | GD21983-PA | 23..219 | 13..204 | 358 | 37.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14352-PA | 277 | GJ14352-PA | 1..277 | 1..275 | 899 | 61.7 | Plus |
Dvir\GJ14118-PA | 322 | GJ14118-PA | 5..294 | 7..274 | 418 | 33.7 | Plus |
Dvir\GJ14112-PA | 275 | GJ14112-PA | 9..260 | 11..252 | 338 | 32 | Plus |
Dvir\GJ16087-PA | 217 | GJ16087-PA | 22..216 | 14..203 | 304 | 32.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15331-PA | 271 | GK15331-PA | 1..263 | 1..273 | 843 | 57.5 | Plus |
Dwil\GK23992-PA | 263 | GK23992-PA | 1..261 | 1..260 | 795 | 56.7 | Plus |
Dwil\GK18074-PA | 268 | GK18074-PA | 16..266 | 11..259 | 446 | 39 | Plus |
Dwil\GK14787-PA | 325 | GK14787-PA | 5..279 | 7..272 | 424 | 33.7 | Plus |
Dwil\GK14786-PA | 275 | GK14786-PA | 4..260 | 6..252 | 370 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18818-PA | 275 | GE18818-PA | 1..275 | 1..275 | 1389 | 93.5 | Plus |
Dyak\GE18817-PA | 275 | GE18817-PA | 1..275 | 1..275 | 1066 | 69.8 | Plus |
Dyak\GE10665-PA | 321 | GE10665-PA | 5..279 | 7..272 | 422 | 33 | Plus |
Dyak\GE10654-PA | 275 | GE10654-PA | 5..256 | 7..247 | 393 | 34.5 | Plus |
Dyak\GE24809-PA | 219 | GE24809-PA | 23..219 | 13..204 | 388 | 38.1 | Plus |
Translation from 1 to 825
> RT08066.hyp MADPNAESCCQPLKEEFQRSKFSLHHEDPGVFCRSQWQNGERNLIWVLYR WLLAAFFAAGVIGSMMQDFNGGRWFIYLTDWGFTLCLFTCTYGAVIATIY YFNQSYFAPGHCALKIYWISHYTTSVLSMLITTVFWAALSLTMPEVAGEL YNLWCHAFNSICMVFDCFMVAYPNRLMHFVYPFSVVLIFLMHSLIYYWAG GTDIDGNRFIYFALDWARPGLAIGFVCASLALICCFSLVAFGIYRLRMSV YNCCGKRKEEAPALKATPNESSPTV
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17906-PA | 275 | CG17906-PA | 1..275 | 1..275 | 1523 | 100 | Plus |
CG9555-PC | 275 | CG9555-PC | 1..275 | 1..275 | 1094 | 68.7 | Plus |
CG9555-PA | 275 | CG9555-PA | 1..275 | 1..275 | 1094 | 68.7 | Plus |
CG4480-PC | 272 | CG4480-PC | 23..271 | 13..256 | 496 | 36.9 | Plus |
CG4480-PB | 272 | CG4480-PB | 23..271 | 13..256 | 496 | 36.9 | Plus |