Clone RT08066 Report

Search the DGRC for RT08066

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:80
Well:66
Vector:pCR2.1
Associated Gene/TranscriptCG17906-RA
Protein status:RT08066.pep: gold
Sequenced Size:828

Clone Sequence Records

RT08066.complete Sequence

828 bp assembled on 2010-04-26

GenBank Submission: BT124792.1

> RT08066.complete
ATGGCTGATCCGAACGCAGAGTCCTGCTGCCAGCCCCTAAAGGAGGAGTT
TCAGCGGTCAAAATTCTCGCTGCACCATGAAGATCCTGGTGTCTTCTGCC
GATCACAATGGCAGAACGGAGAGCGGAATTTAATCTGGGTTCTATACCGA
TGGCTTCTGGCTGCTTTCTTTGCCGCTGGAGTCATTGGCAGCATGATGCA
GGATTTCAATGGCGGTCGATGGTTTATTTATCTCACGGATTGGGGATTTA
CACTGTGTCTATTTACCTGCACTTACGGGGCTGTAATCGCTACTATTTAC
TACTTCAATCAATCTTATTTTGCTCCCGGACATTGTGCTCTGAAAATTTA
CTGGATCTCACACTACACCACTTCGGTACTATCCATGTTGATTACCACCG
TCTTCTGGGCAGCTCTATCATTAACCATGCCAGAAGTGGCAGGTGAGCTT
TACAACTTGTGGTGCCATGCATTCAACTCGATCTGCATGGTCTTCGACTG
CTTTATGGTGGCTTATCCTAACCGTCTTATGCACTTTGTGTATCCCTTTT
CGGTGGTGCTCATATTCTTGATGCATTCCCTTATTTACTATTGGGCCGGC
GGAACCGACATCGACGGAAATCGCTTCATCTACTTCGCCCTGGACTGGGC
TCGACCTGGTCTGGCGATTGGATTCGTTTGCGCGAGTTTGGCATTGATCT
GTTGCTTTTCCCTCGTGGCCTTTGGAATTTACAGGTTGCGGATGTCAGTG
TACAACTGTTGTGGCAAAAGGAAGGAGGAAGCACCAGCCTTAAAAGCTAC
GCCCAATGAATCATCTCCAACTGTTTAA

RT08066.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17906-RA 828 CG17906-RA 1..828 1..828 4140 100 Plus
alien-RB 2412 alien-RB 1525..1733 820..612 1045 100 Minus
alien-RB 2412 alien-RB 1788..1978 611..421 940 99.4 Minus
alien-RB 2412 alien-RB 2279..2412 322..189 670 100 Minus
alien-RB 2412 alien-RB 2037..2139 424..322 515 100 Minus
CG9555-RA 1574 CG9555-RA 617..882 284..549 355 75.5 Plus
CG9555-RA 1574 CG9555-RA 361..528 28..195 345 80.3 Plus
CG9555-RA 1574 CG9555-RA 949..1005 616..672 180 87.7 Plus
CG9555-RA 1574 CG9555-RA 547..582 214..249 150 94.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8993371..8993692 1..322 1595 99.7 Plus
chr2L 23010047 chr2L 8994238..8994452 612..826 1075 100 Plus
chr2L 23010047 chr2L 8993993..8994183 421..611 910 98.4 Plus
chr2L 23010047 chr2L 8993832..8993931 322..421 500 100 Plus
chr2L 23010047 chr2L 8991001..8991295 28..322 470 77.3 Plus
chr2L 23010047 chr2L 8991759..8991883 425..549 295 82.4 Plus
chr2L 23010047 chr2L 8992007..8992063 616..672 195 89.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8994463..8994784 1..322 1610 100 Plus
2L 23513712 2L 8995330..8995546 612..828 1085 100 Plus
2L 23513712 2L 8995085..8995275 421..611 940 99.5 Plus
2L 23513712 2L 8994924..8995026 322..424 515 100 Plus
2L 23513712 2L 8992090..8992384 28..322 440 76.6 Plus
2L 23513712 2L 8992850..8992974 425..549 265 80.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8994463..8994784 1..322 1610 100 Plus
2L 23513712 2L 8995330..8995546 612..828 1085 100 Plus
2L 23513712 2L 8995085..8995275 421..611 940 99.4 Plus
2L 23513712 2L 8994924..8995026 322..424 515 100 Plus
2L 23513712 2L 8992090..8992257 28..195 345 80.3 Plus
2L 23513712 2L 8992850..8992974 425..549 265 80.8 Plus
2L 23513712 2L 8993098..8993154 616..672 180 87.7 Plus
2L 23513712 2L 8992276..8992311 214..249 150 94.4 Plus
Blast to na_te.dros performed on 2019-03-16 17:32:22 has no hits.

RT08066.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:33:30 Download gff for RT08066.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8993371..8993692 1..322 99 -> Plus
chr2L 8993833..8993934 323..424 99 -> Plus
chr2L 8993997..8994183 425..611 98 -> Plus
chr2L 8994238..8994454 612..828 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-26 11:48:11 Download gff for RT08066.complete
Subject Subject Range Query Range Percent Splice Strand
CG17906-RA 1..826 1..826 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-17 17:08:37 Download gff for RT08066.complete
Subject Subject Range Query Range Percent Splice Strand
CG17906-RA 1..828 1..828 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:34:42 Download gff for RT08066.complete
Subject Subject Range Query Range Percent Splice Strand
CG17906-RA 1..828 1..828 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:00:44 Download gff for RT08066.complete
Subject Subject Range Query Range Percent Splice Strand
CG17906-RA 1..828 1..828 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-26 11:48:10 Download gff for RT08066.complete
Subject Subject Range Query Range Percent Splice Strand
CG17906-RA 1..826 1..826 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-17 17:08:37 Download gff for RT08066.complete
Subject Subject Range Query Range Percent Splice Strand
CG17906-RA 1..828 1..828 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:42 Download gff for RT08066.complete
Subject Subject Range Query Range Percent Splice Strand
CG17906-RA 1..828 1..828 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:00:44 Download gff for RT08066.complete
Subject Subject Range Query Range Percent Splice Strand
CG17906-RA 73..900 1..828 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:33:30 Download gff for RT08066.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8995089..8995275 425..611 100 -> Plus
2L 8995330..8995546 612..828 100   Plus
2L 8994463..8994784 1..322 100 -> Plus
2L 8994925..8995026 323..424 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:33:30 Download gff for RT08066.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8995089..8995275 425..611 100 -> Plus
2L 8995330..8995546 612..828 100   Plus
2L 8994463..8994784 1..322 100 -> Plus
2L 8994925..8995026 323..424 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:33:30 Download gff for RT08066.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8995089..8995275 425..611 100 -> Plus
2L 8995330..8995546 612..828 100   Plus
2L 8994463..8994784 1..322 100 -> Plus
2L 8994925..8995026 323..424 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:42 Download gff for RT08066.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8995089..8995275 425..611 100 -> Plus
arm_2L 8995330..8995546 612..828 100   Plus
arm_2L 8994463..8994784 1..322 100 -> Plus
arm_2L 8994925..8995026 323..424 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:15:21 Download gff for RT08066.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8994463..8994784 1..322 100 -> Plus
2L 8994925..8995026 323..424 100 -> Plus
2L 8995089..8995275 425..611 100 -> Plus
2L 8995330..8995546 612..828 100   Plus

RT08066.pep Sequence

Translation from 0 to 827

> RT08066.pep
MADPNAESCCQPLKEEFQRSKFSLHHEDPGVFCRSQWQNGERNLIWVLYR
WLLAAFFAAGVIGSMMQDFNGGRWFIYLTDWGFTLCLFTCTYGAVIATIY
YFNQSYFAPGHCALKIYWISHYTTSVLSMLITTVFWAALSLTMPEVAGEL
YNLWCHAFNSICMVFDCFMVAYPNRLMHFVYPFSVVLIFLMHSLIYYWAG
GTDIDGNRFIYFALDWARPGLAIGFVCASLALICCFSLVAFGIYRLRMSV
YNCCGKRKEEAPALKATPNESSPTV*

RT08066.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22686-PA 273 GF22686-PA 1..271 1..271 1068 71.2 Plus
Dana\GF22683-PA 275 GF22683-PA 1..275 1..275 1007 66.2 Plus
Dana\GF22137-PA 320 GF22137-PA 5..276 7..269 411 32.6 Plus
Dana\GF15003-PA 316 GF15003-PA 11..219 2..203 399 35.4 Plus
Dana\GF22126-PA 275 GF22126-PA 5..256 7..247 394 34.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25323-PA 271 GG25323-PA 1..271 1..275 1256 86.2 Plus
Dere\GG25322-PA 275 GG25322-PA 1..275 1..275 1051 68.7 Plus
Dere\GG24041-PA 275 GG24041-PA 5..256 7..247 393 35.3 Plus
Dere\GG24042-PA 321 GG24042-PA 5..279 7..272 379 32.2 Plus
Dere\GG24237-PA 219 GG24237-PA 11..219 3..204 346 36.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22258-PA 277 GH22258-PA 1..274 1..275 878 60.4 Plus
Dgri\GH25087-PA 303 GH25087-PA 27..300 1..275 877 60.4 Plus
Dgri\GH25119-PA 326 GH25119-PA 5..279 7..272 417 33 Plus
Dgri\GH10829-PA 272 GH10829-PA 22..270 13..256 373 31.3 Plus
Dgri\GH25118-PA 276 GH25118-PA 5..261 7..252 338 32.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17906-PA 275 CG17906-PA 1..275 1..275 1523 100 Plus
CG9555-PC 275 CG9555-PC 1..275 1..275 1094 68.7 Plus
CG9555-PA 275 CG9555-PA 1..275 1..275 1094 68.7 Plus
CG4480-PC 272 CG4480-PC 23..271 13..256 496 36.9 Plus
CG4480-PB 272 CG4480-PB 23..271 13..256 496 36.9 Plus
CG13101-PB 318 CG13101-PB 13..264 12..254 446 34.6 Plus
CG13101-PA 318 CG13101-PA 13..264 12..254 446 34.6 Plus
rost-PC 275 CG9552-PC 8..256 10..247 420 34.5 Plus
rost-PB 275 CG9552-PB 8..256 10..247 420 34.5 Plus
rost-PA 275 CG9552-PA 8..256 10..247 420 34.5 Plus
CG43778-PD 451 CG43778-PD 13..257 21..251 236 25.5 Plus
CG43778-PA 963 CG43778-PA 525..769 21..251 236 25.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17453-PA 274 GI17453-PA 1..273 1..272 831 57.1 Plus
Dmoj\GI11979-PA 275 GI11979-PA 9..260 11..252 344 31.6 Plus
Dmoj\GI11990-PA 292 GI11990-PA 10..263 11..274 310 30.5 Plus
Dmoj\GI17340-PA 223 GI17340-PA 29..222 15..203 309 33 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26234-PA 274 GL26234-PA 1..267 1..267 1013 66.7 Plus
Dper\GL26235-PA 264 GL26235-PA 1..260 1..260 894 60.8 Plus
Dper\GL25740-PA 273 GL25740-PA 11..271 3..256 457 36.8 Plus
Dper\GL25545-PA 321 GL25545-PA 5..279 7..272 417 33.7 Plus
Dper\GL11487-PA 266 GL11487-PA 5..256 7..247 396 34.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21876-PA 274 GA21876-PA 1..267 1..267 1024 67.4 Plus
Dpse\GA28091-PA 264 GA28091-PA 1..260 1..260 897 60.8 Plus
Dpse\GA18212-PA 273 GA18212-PA 11..271 3..256 462 37.2 Plus
Dpse\GA12046-PA 321 GA12046-PA 5..279 7..272 417 33.7 Plus
Dpse\GA24744-PA 266 GA24744-PA 5..256 7..247 396 34.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17336-PA 275 GM17336-PA 1..275 1..275 1440 97.1 Plus
Dsec\GM17325-PA 275 GM17325-PA 1..275 1..275 1061 69.5 Plus
Dsec\GM12606-PA 321 GM12606-PA 5..279 7..272 424 33.6 Plus
Dsec\GM12594-PA 275 GM12594-PA 5..256 7..247 388 34.1 Plus
Dsec\GM14654-PA 219 GM14654-PA 23..219 13..204 362 38.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23581-PA 424 GD23581-PA 1..211 1..211 1080 93.8 Plus
Dsim\GD23580-PA 275 GD23580-PA 1..275 1..275 1066 69.8 Plus
Dsim\GD22370-PA 321 GD22370-PA 5..279 7..272 420 32.9 Plus
Dsim\GD22369-PA 275 GD22369-PA 5..256 7..247 387 34.1 Plus
Dsim\GD21983-PA 219 GD21983-PA 23..219 13..204 358 37.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14352-PA 277 GJ14352-PA 1..277 1..275 899 61.7 Plus
Dvir\GJ14118-PA 322 GJ14118-PA 5..294 7..274 418 33.7 Plus
Dvir\GJ14112-PA 275 GJ14112-PA 9..260 11..252 338 32 Plus
Dvir\GJ16087-PA 217 GJ16087-PA 22..216 14..203 304 32.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15331-PA 271 GK15331-PA 1..263 1..273 843 57.5 Plus
Dwil\GK23992-PA 263 GK23992-PA 1..261 1..260 795 56.7 Plus
Dwil\GK18074-PA 268 GK18074-PA 16..266 11..259 446 39 Plus
Dwil\GK14787-PA 325 GK14787-PA 5..279 7..272 424 33.7 Plus
Dwil\GK14786-PA 275 GK14786-PA 4..260 6..252 370 33.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18818-PA 275 GE18818-PA 1..275 1..275 1389 93.5 Plus
Dyak\GE18817-PA 275 GE18817-PA 1..275 1..275 1066 69.8 Plus
Dyak\GE10665-PA 321 GE10665-PA 5..279 7..272 422 33 Plus
Dyak\GE10654-PA 275 GE10654-PA 5..256 7..247 393 34.5 Plus
Dyak\GE24809-PA 219 GE24809-PA 23..219 13..204 388 38.1 Plus

RT08066.hyp Sequence

Translation from 1 to 825

> RT08066.hyp
MADPNAESCCQPLKEEFQRSKFSLHHEDPGVFCRSQWQNGERNLIWVLYR
WLLAAFFAAGVIGSMMQDFNGGRWFIYLTDWGFTLCLFTCTYGAVIATIY
YFNQSYFAPGHCALKIYWISHYTTSVLSMLITTVFWAALSLTMPEVAGEL
YNLWCHAFNSICMVFDCFMVAYPNRLMHFVYPFSVVLIFLMHSLIYYWAG
GTDIDGNRFIYFALDWARPGLAIGFVCASLALICCFSLVAFGIYRLRMSV
YNCCGKRKEEAPALKATPNESSPTV

RT08066.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17906-PA 275 CG17906-PA 1..275 1..275 1523 100 Plus
CG9555-PC 275 CG9555-PC 1..275 1..275 1094 68.7 Plus
CG9555-PA 275 CG9555-PA 1..275 1..275 1094 68.7 Plus
CG4480-PC 272 CG4480-PC 23..271 13..256 496 36.9 Plus
CG4480-PB 272 CG4480-PB 23..271 13..256 496 36.9 Plus