BDGP Sequence Production Resources |
Search the DGRC for RT08523
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 85 |
Well: | 23 |
Vector: | pCR2.1 |
Associated Gene/Transcript | CG13247-RA |
Protein status: | RT08523.pep: gold |
Sequenced Size: | 1305 |
1305 bp assembled on 2010-06-04
GenBank Submission: BT125012.1
> RT08523.complete CAAAAGTGTACACTATTTTTAGAGTTTGGTGGGAGGGTCCCATTCTAAAA GTAGTTCCACGCACCAGAAGTCAAAAGACACGCCGACCAATAAATCCACG TGAACGAGTGGCTCAAGGTGGTGCTCCCCAAATTGCCAATTTCCCAAGAT TCGTCGACAGTTGTGTTTGGGTGTTTCAACAGAAGAGGATTCTTGGTGGA TGGATATGATGACAGCTACGTGGATGCTGTGTCTTGTTCTCTGCTCCACG GCGATGGCGACGGAGGAGGAATCGGGCAGTGGACTGTTCAACGTCACCGG GAATCCCTTGGATACAGAAGCTGCTCCAAAACTGCCCAGCGAAGTGCAGA AAGCTGTTTGCACTGTGACTGCGGGGGAGGTGAAGGCATCTGCCGAGGCT GTCACCACAAAAACCCTTAAGGGAGTGTGTGGATCAGATGAAATGAACAT GGCCTTCCGAAGTCTGGAGAACAAGCTCTACGAAGAGCTTCGTGTAATGA AACTGATTTTGGTGCACTTAGCCAAGGCGAATGGACTTAAGCTCAATACA GCCTTTTCCCCATCTGTGACCACTCCACCTCCGACTATGAGGCCAATCAC TAGCGCTGCGGTGCCGCCAATCTTCAAGCCAATTGATCCTCCCAAGAAGC TTTCCAATTCCACCAATTCGAAAGCCGAAGAGAACGAAGTTGCTCCAGAC TTCGGACTTAAGAAGACTCCTACTCTGAAAAACTTGGATTCGAACGCAAA TCTTGGAGCTCGTGAAAATGAAGTCGATAAGTTCAATAATACTGTACTGG CCGATCAGGATGTAAAGTTGTTCACTTACTATTGGAAGTTGGAGAACGTT ACGGAACTTATCAAAGCACCTAAATTGGCCACTGTCAGTAGTCCGATATT CAGCTTTAAAGGCAAGTCCCTGCAACTAAAGTGCACTTTCCATCACATGA ATCGCGAACTGCTGAACCTGCAACTGGGATACGGCGTCTTTAACCCAAAA TCTAAAACTGGCCAAAGCAACAACATCTTGTTAGAAATGGACGGAATTTT CCAGAACACTAAGTGGACCGAAGATATCCAGCTGAAGCACAAGATTTCCA TACTGGATCAAAGTCACACCCAACGAAGAACGCAAGATCTCAGTTCACAG GTGCTGAACAAGCTGGACACGGGTTTCTCTATCCCAAACAGTGTGCTCCT CGGTAGCTCTTACATCAAGCAGAACGCGCTGTTGATCCAAATTCTTTTAT ATTTGTGAATGACAAAACAATGTTTTTTTTCGAGCAATTAAAACAAAAAG AGACC
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 20359866..20360343 | 435..912 | 2375 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 20359372..20359808 | 1..437 | 2185 | 100 | Plus |
chr3L | 24539361 | chr3L | 20360406..20360805 | 906..1305 | 1985 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 20370807..20371284 | 435..912 | 2390 | 100 | Plus |
3L | 28110227 | 3L | 20370313..20370749 | 1..437 | 2185 | 100 | Plus |
3L | 28110227 | 3L | 20371347..20371746 | 906..1305 | 1985 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 20363907..20364384 | 435..912 | 2390 | 100 | Plus |
3L | 28103327 | 3L | 20363413..20363849 | 1..437 | 2185 | 100 | Plus |
3L | 28103327 | 3L | 20364447..20364846 | 906..1305 | 1985 | 99.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20359372..20359808 | 1..437 | 100 | -> | Plus |
chr3L | 20359869..20360342 | 438..911 | 99 | -> | Plus |
chr3L | 20360412..20360805 | 912..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13247-RA | 1..1005 | 254..1258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13247-RA | 1..1005 | 254..1258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13247-RA | 1..1005 | 254..1258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13247-RA | 1..1005 | 254..1258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13247-RA | 1..1005 | 254..1258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13247-RA | 1..1005 | 254..1258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13247-RA | 1..1305 | 1..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13247-RA | 1..1305 | 1..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20370313..20370749 | 1..437 | 100 | -> | Plus |
3L | 20370810..20371283 | 438..911 | 100 | -> | Plus |
3L | 20371353..20371746 | 912..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20370313..20370749 | 1..437 | 100 | -> | Plus |
3L | 20370810..20371283 | 438..911 | 100 | -> | Plus |
3L | 20371353..20371746 | 912..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20370313..20370749 | 1..437 | 100 | -> | Plus |
3L | 20370810..20371283 | 438..911 | 100 | -> | Plus |
3L | 20371353..20371746 | 912..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20363413..20363849 | 1..437 | 100 | -> | Plus |
arm_3L | 20363910..20364383 | 438..911 | 100 | -> | Plus |
arm_3L | 20364453..20364846 | 912..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20363413..20363849 | 1..437 | 100 | -> | Plus |
3L | 20363910..20364383 | 438..911 | 100 | -> | Plus |
3L | 20364453..20364846 | 912..1305 | 100 | Plus |
Translation from 199 to 1257
> RT08523.hyp MDMMTATWMLCLVLCSTAMATEEESGSGLFNVTGNPLDTEAAPKLPSEVQ KAVCTVTAGEVKASAEAVTTKTLKGVCGSDEMNMAFRSLENKLYEELRVM KLILVHLAKANGLKLNTAFSPSVTTPPPTMRPITSAAVPPIFKPIDPPKK LSNSTNSKAEENEVAPDFGLKKTPTLKNLDSNANLGARENEVDKFNNTVL ADQDVKLFTYYWKLENVTELIKAPKLATVSSPIFSFKGKSLQLKCTFHHM NRELLNLQLGYGVFNPKSKTGQSNNILLEMDGIFQNTKWTEDIQLKHKIS ILDQSHTQRRTQDLSSQVLNKLDTGFSIPNSVLLGSSYIKQNALLIQILL YL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13247-PA | 334 | CG13247-PA | 1..334 | 19..352 | 1700 | 100 | Plus |
Translation from 199 to 1257
> RT08523.pep MDMMTATWMLCLVLCSTAMATEEESGSGLFNVTGNPLDTEAAPKLPSEVQ KAVCTVTAGEVKASAEAVTTKTLKGVCGSDEMNMAFRSLENKLYEELRVM KLILVHLAKANGLKLNTAFSPSVTTPPPTMRPITSAAVPPIFKPIDPPKK LSNSTNSKAEENEVAPDFGLKKTPTLKNLDSNANLGARENEVDKFNNTVL ADQDVKLFTYYWKLENVTELIKAPKLATVSSPIFSFKGKSLQLKCTFHHM NRELLNLQLGYGVFNPKSKTGQSNNILLEMDGIFQNTKWTEDIQLKHKIS ILDQSHTQRRTQDLSSQVLNKLDTGFSIPNSVLLGSSYIKQNALLIQILL YL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10334-PA | 351 | GF10334-PA | 8..351 | 9..352 | 1161 | 66.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16107-PA | 348 | GG16107-PA | 1..348 | 4..352 | 1637 | 90 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16971-PA | 338 | GH16971-PA | 4..338 | 8..352 | 795 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13247-PC | 352 | CG13247-PC | 1..352 | 1..352 | 1798 | 100 | Plus |
CG13247-PB | 352 | CG13247-PB | 1..352 | 1..352 | 1798 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11837-PA | 346 | GI11837-PA | 4..346 | 8..352 | 777 | 49 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11880-PA | 302 | GL11880-PA | 16..302 | 8..352 | 785 | 50.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12150-PA | 331 | GA12150-PA | 16..331 | 8..352 | 823 | 52.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22283-PA | 334 | GM22283-PA | 1..334 | 19..352 | 1692 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14881-PA | 334 | GD14881-PA | 1..334 | 19..352 | 1689 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13535-PA | 324 | GJ13535-PA | 4..324 | 8..352 | 807 | 49.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16957-PA | 364 | GK16957-PA | 1..364 | 3..352 | 821 | 52.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19672-PA | 348 | GE19672-PA | 1..348 | 4..352 | 1674 | 91.7 | Plus |