Clone RT08523 Report

Search the DGRC for RT08523

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:85
Well:23
Vector:pCR2.1
Associated Gene/TranscriptCG13247-RA
Protein status:RT08523.pep: gold
Sequenced Size:1305

Clone Sequence Records

RT08523.complete Sequence

1305 bp assembled on 2010-06-04

GenBank Submission: BT125012.1

> RT08523.complete
CAAAAGTGTACACTATTTTTAGAGTTTGGTGGGAGGGTCCCATTCTAAAA
GTAGTTCCACGCACCAGAAGTCAAAAGACACGCCGACCAATAAATCCACG
TGAACGAGTGGCTCAAGGTGGTGCTCCCCAAATTGCCAATTTCCCAAGAT
TCGTCGACAGTTGTGTTTGGGTGTTTCAACAGAAGAGGATTCTTGGTGGA
TGGATATGATGACAGCTACGTGGATGCTGTGTCTTGTTCTCTGCTCCACG
GCGATGGCGACGGAGGAGGAATCGGGCAGTGGACTGTTCAACGTCACCGG
GAATCCCTTGGATACAGAAGCTGCTCCAAAACTGCCCAGCGAAGTGCAGA
AAGCTGTTTGCACTGTGACTGCGGGGGAGGTGAAGGCATCTGCCGAGGCT
GTCACCACAAAAACCCTTAAGGGAGTGTGTGGATCAGATGAAATGAACAT
GGCCTTCCGAAGTCTGGAGAACAAGCTCTACGAAGAGCTTCGTGTAATGA
AACTGATTTTGGTGCACTTAGCCAAGGCGAATGGACTTAAGCTCAATACA
GCCTTTTCCCCATCTGTGACCACTCCACCTCCGACTATGAGGCCAATCAC
TAGCGCTGCGGTGCCGCCAATCTTCAAGCCAATTGATCCTCCCAAGAAGC
TTTCCAATTCCACCAATTCGAAAGCCGAAGAGAACGAAGTTGCTCCAGAC
TTCGGACTTAAGAAGACTCCTACTCTGAAAAACTTGGATTCGAACGCAAA
TCTTGGAGCTCGTGAAAATGAAGTCGATAAGTTCAATAATACTGTACTGG
CCGATCAGGATGTAAAGTTGTTCACTTACTATTGGAAGTTGGAGAACGTT
ACGGAACTTATCAAAGCACCTAAATTGGCCACTGTCAGTAGTCCGATATT
CAGCTTTAAAGGCAAGTCCCTGCAACTAAAGTGCACTTTCCATCACATGA
ATCGCGAACTGCTGAACCTGCAACTGGGATACGGCGTCTTTAACCCAAAA
TCTAAAACTGGCCAAAGCAACAACATCTTGTTAGAAATGGACGGAATTTT
CCAGAACACTAAGTGGACCGAAGATATCCAGCTGAAGCACAAGATTTCCA
TACTGGATCAAAGTCACACCCAACGAAGAACGCAAGATCTCAGTTCACAG
GTGCTGAACAAGCTGGACACGGGTTTCTCTATCCCAAACAGTGTGCTCCT
CGGTAGCTCTTACATCAAGCAGAACGCGCTGTTGATCCAAATTCTTTTAT
ATTTGTGAATGACAAAACAATGTTTTTTTTCGAGCAATTAAAACAAAAAG
AGACC

RT08523.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13247-RA 1305 CG13247-RA 1..1305 1..1305 6525 100 Plus
Ide-RB 3626 Ide-RB 3460..3626 1305..1139 835 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20359866..20360343 435..912 2375 99.8 Plus
chr3L 24539361 chr3L 20359372..20359808 1..437 2185 100 Plus
chr3L 24539361 chr3L 20360406..20360805 906..1305 1985 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20370807..20371284 435..912 2390 100 Plus
3L 28110227 3L 20370313..20370749 1..437 2185 100 Plus
3L 28110227 3L 20371347..20371746 906..1305 1985 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20363907..20364384 435..912 2390 100 Plus
3L 28103327 3L 20363413..20363849 1..437 2185 100 Plus
3L 28103327 3L 20364447..20364846 906..1305 1985 99.7 Plus
Blast to na_te.dros performed on 2019-03-15 15:09:58 has no hits.

RT08523.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:10:35 Download gff for RT08523.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20359372..20359808 1..437 100 -> Plus
chr3L 20359869..20360342 438..911 99 -> Plus
chr3L 20360412..20360805 912..1305 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-06-04 14:17:51 Download gff for RT08523.complete
Subject Subject Range Query Range Percent Splice Strand
CG13247-RA 1..1005 254..1258 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 22:01:29 Download gff for RT08523.complete
Subject Subject Range Query Range Percent Splice Strand
CG13247-RA 1..1005 254..1258 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:05:43 Download gff for RT08523.complete
Subject Subject Range Query Range Percent Splice Strand
CG13247-RA 1..1005 254..1258 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:29:53 Download gff for RT08523.complete
Subject Subject Range Query Range Percent Splice Strand
CG13247-RA 1..1005 254..1258 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-04 14:17:51 Download gff for RT08523.complete
Subject Subject Range Query Range Percent Splice Strand
CG13247-RA 1..1005 254..1258 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 22:01:29 Download gff for RT08523.complete
Subject Subject Range Query Range Percent Splice Strand
CG13247-RA 1..1005 254..1258 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:05:43 Download gff for RT08523.complete
Subject Subject Range Query Range Percent Splice Strand
CG13247-RA 1..1305 1..1305 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:29:53 Download gff for RT08523.complete
Subject Subject Range Query Range Percent Splice Strand
CG13247-RA 1..1305 1..1305 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:10:35 Download gff for RT08523.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20370313..20370749 1..437 100 -> Plus
3L 20370810..20371283 438..911 100 -> Plus
3L 20371353..20371746 912..1305 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:10:35 Download gff for RT08523.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20370313..20370749 1..437 100 -> Plus
3L 20370810..20371283 438..911 100 -> Plus
3L 20371353..20371746 912..1305 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:10:35 Download gff for RT08523.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20370313..20370749 1..437 100 -> Plus
3L 20370810..20371283 438..911 100 -> Plus
3L 20371353..20371746 912..1305 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:05:43 Download gff for RT08523.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20363413..20363849 1..437 100 -> Plus
arm_3L 20363910..20364383 438..911 100 -> Plus
arm_3L 20364453..20364846 912..1305 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:39:19 Download gff for RT08523.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20363413..20363849 1..437 100 -> Plus
3L 20363910..20364383 438..911 100 -> Plus
3L 20364453..20364846 912..1305 100   Plus

RT08523.hyp Sequence

Translation from 199 to 1257

> RT08523.hyp
MDMMTATWMLCLVLCSTAMATEEESGSGLFNVTGNPLDTEAAPKLPSEVQ
KAVCTVTAGEVKASAEAVTTKTLKGVCGSDEMNMAFRSLENKLYEELRVM
KLILVHLAKANGLKLNTAFSPSVTTPPPTMRPITSAAVPPIFKPIDPPKK
LSNSTNSKAEENEVAPDFGLKKTPTLKNLDSNANLGARENEVDKFNNTVL
ADQDVKLFTYYWKLENVTELIKAPKLATVSSPIFSFKGKSLQLKCTFHHM
NRELLNLQLGYGVFNPKSKTGQSNNILLEMDGIFQNTKWTEDIQLKHKIS
ILDQSHTQRRTQDLSSQVLNKLDTGFSIPNSVLLGSSYIKQNALLIQILL
YL*

RT08523.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13247-PA 334 CG13247-PA 1..334 19..352 1700 100 Plus

RT08523.pep Sequence

Translation from 199 to 1257

> RT08523.pep
MDMMTATWMLCLVLCSTAMATEEESGSGLFNVTGNPLDTEAAPKLPSEVQ
KAVCTVTAGEVKASAEAVTTKTLKGVCGSDEMNMAFRSLENKLYEELRVM
KLILVHLAKANGLKLNTAFSPSVTTPPPTMRPITSAAVPPIFKPIDPPKK
LSNSTNSKAEENEVAPDFGLKKTPTLKNLDSNANLGARENEVDKFNNTVL
ADQDVKLFTYYWKLENVTELIKAPKLATVSSPIFSFKGKSLQLKCTFHHM
NRELLNLQLGYGVFNPKSKTGQSNNILLEMDGIFQNTKWTEDIQLKHKIS
ILDQSHTQRRTQDLSSQVLNKLDTGFSIPNSVLLGSSYIKQNALLIQILL
YL*

RT08523.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10334-PA 351 GF10334-PA 8..351 9..352 1161 66.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16107-PA 348 GG16107-PA 1..348 4..352 1637 90 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16971-PA 338 GH16971-PA 4..338 8..352 795 48.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13247-PC 352 CG13247-PC 1..352 1..352 1798 100 Plus
CG13247-PB 352 CG13247-PB 1..352 1..352 1798 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11837-PA 346 GI11837-PA 4..346 8..352 777 49 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11880-PA 302 GL11880-PA 16..302 8..352 785 50.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12150-PA 331 GA12150-PA 16..331 8..352 823 52.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22283-PA 334 GM22283-PA 1..334 19..352 1692 95.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14881-PA 334 GD14881-PA 1..334 19..352 1689 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13535-PA 324 GJ13535-PA 4..324 8..352 807 49.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16957-PA 364 GK16957-PA 1..364 3..352 821 52.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19672-PA 348 GE19672-PA 1..348 4..352 1674 91.7 Plus