Clone RT08607 Report

Search the DGRC for RT08607

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:86
Well:7
Vector:pCR2.1
Associated Gene/TranscriptCG18094-RA
Protein status:RT08607.pep: gold
Sequenced Size:1138

Clone Sequence Records

RT08607.complete Sequence

1138 bp assembled on 2010-06-02

GenBank Submission: BT124970.1

> RT08607.complete
ATGACTACTAAAACTGGAACTTATAGACCTTCGGCTAGCCTTATTGTAGC
CGCCAAAGAGGATTCTTTAGAGGACTACGACTACAGATTATTGTTGATTA
AACGAACTGAAAAAACTTCCTATGCATTGAACCATTGCGTCTTTCCTGGC
GGCGTCTTCGATCCTATAGAAGATCAATCTGCGAAATGGATAACTTTTTT
CAAATCCTTTGGGGTGACCGATGAACAATTAAAAATGTGTAGGCACAATC
AGGATTCTCCAAGGCCTGAGTTTCTATCCGGTGGAGACCATATTTCAAGG
GACATTGCACTGCGACTGACTGCGCTCAGGGAAACCTTTGAAGAGGTGGG
CATCTTGATTTGCACAGAACAGGACGACATACAAAAATGGGATTCTAAAT
CGGGTCATCCTAGAACCGTGCTTCTCGAGTCAAGCGAACACTTCGAATGG
CAACATCGGGTTCACAATGATGCCTCACAGTTTCTGGAACTCTTTCGGCA
TTATAAAGTCATTCCCAATATCTGGTCTCTTCAGGAATGGTCCATTTGGA
GGACAGCAGCCACTGCCAATCGGAAATATGACACTGTTTATTATATCACC
ATGTTAGATAAGTACACCAGGAATATAAAGCTGCTTCTGGAACCGCACGA
GGTGGCTTCGGCCCACTGGTTGAGTCCGATCGAGGCTTGGTCGAGCTCAC
AGAAAGCCATTATTTGGCTCCCGTTCATGCTGCTCTATGACATCGCTCGT
CTGATGAACTTCTATAGCTTTCAGGAGCTTCTCAACTTCTCCCGCCAAAG
GAGCTGCAATGGAAGCACAATGGTGCAGCCCGTCTACTATCGCTGCGATG
ACTGCATGTTTGGAGTTCTTCCTGGTGATGAGCTCTATCCCAAAGAACCA
GGCGCTTGTACACAAACAATTATCTTGTCGGGATCGGTGGACGACCTTCA
TCGAAAGTCCAAGCAATACAATCGCTATATCGTCTACGACTTCCACAAGG
TCGTACTGGCCTCCAATATACCGCCCTGCGATGGGCATCTGCCACTGCAG
CCTCTTGTCAATAACAAGCTAGCCAAGTTGTAGTAAAAGAATATAGTTTT
AATAGAAAATATATATATTTCCTCTTGCGCTACAACAA

RT08607.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG18094-RA 1395 CG18094-RA 206..1343 1..1138 5690 100 Plus
CG10189-RA 1285 CG10189-RA 1244..1285 1138..1097 210 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19489173..19490221 88..1136 5245 100 Plus
chr2L 23010047 chr2L 19489025..19489115 1..91 440 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19490634..19491684 88..1138 5255 100 Plus
2L 23513712 2L 19490486..19490576 1..91 440 98.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19490634..19491684 88..1138 5255 100 Plus
2L 23513712 2L 19490486..19490576 1..91 440 98.9 Plus
Blast to na_te.dros performed 2019-03-16 17:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 1125..1221 1022..1117 122 59.8 Plus

RT08607.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:46:28 Download gff for RT08607.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19489025..19489111 1..87 100 -> Plus
chr2L 19489173..19490221 88..1136 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-06-02 13:23:41 Download gff for RT08607.complete
Subject Subject Range Query Range Percent Splice Strand
CG18094-RA 1..1083 1..1083 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-17 17:09:10 Download gff for RT08607.complete
Subject Subject Range Query Range Percent Splice Strand
CG18094-RA 1..1083 1..1083 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:37:43 Download gff for RT08607.complete
Subject Subject Range Query Range Percent Splice Strand
CG18094-RA 1..1083 1..1083 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:17:31 Download gff for RT08607.complete
Subject Subject Range Query Range Percent Splice Strand
CG18094-RA 1..1083 1..1083 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-02 13:23:40 Download gff for RT08607.complete
Subject Subject Range Query Range Percent Splice Strand
CG18094-RA 1..1136 1..1136 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-17 17:09:09 Download gff for RT08607.complete
Subject Subject Range Query Range Percent Splice Strand
CG18094-RA 1..1133 1..1133 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:43 Download gff for RT08607.complete
Subject Subject Range Query Range Percent Splice Strand
CG18094-RA 64..1196 1..1133 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:31 Download gff for RT08607.complete
Subject Subject Range Query Range Percent Splice Strand
CG18094-RA 64..1196 1..1133 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:28 Download gff for RT08607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19490486..19490572 1..87 100 -> Plus
2L 19490634..19491682 88..1136 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:28 Download gff for RT08607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19490486..19490572 1..87 100 -> Plus
2L 19490634..19491682 88..1136 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:28 Download gff for RT08607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19490486..19490572 1..87 100 -> Plus
2L 19490634..19491682 88..1136 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:43 Download gff for RT08607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19490486..19490572 1..87 100 -> Plus
arm_2L 19490634..19491682 88..1136 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:37:21 Download gff for RT08607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19490634..19491682 88..1136 100   Plus
2L 19490486..19490572 1..87 100 -> Plus

RT08607.pep Sequence

Translation from 0 to 1082

> RT08607.pep
MTTKTGTYRPSASLIVAAKEDSLEDYDYRLLLIKRTEKTSYALNHCVFPG
GVFDPIEDQSAKWITFFKSFGVTDEQLKMCRHNQDSPRPEFLSGGDHISR
DIALRLTALRETFEEVGILICTEQDDIQKWDSKSGHPRTVLLESSEHFEW
QHRVHNDASQFLELFRHYKVIPNIWSLQEWSIWRTAATANRKYDTVYYIT
MLDKYTRNIKLLLEPHEVASAHWLSPIEAWSSSQKAIIWLPFMLLYDIAR
LMNFYSFQELLNFSRQRSCNGSTMVQPVYYRCDDCMFGVLPGDELYPKEP
GACTQTIILSGSVDDLHRKSKQYNRYIVYDFHKVVLASNIPPCDGHLPLQ
PLVNNKLAKL*

RT08607.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14240-PA 353 GF14240-PA 2..353 8..360 1331 67.4 Plus
Dana\GF15630-PA 352 GF15630-PA 10..329 9..326 587 38.1 Plus
Dana\GF15631-PA 342 GF15631-PA 12..310 30..326 525 36.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21188-PA 361 GG21188-PA 4..361 3..360 1715 88.3 Plus
Dere\GG21628-PA 351 GG21628-PA 9..338 9..333 547 36.8 Plus
Dere\GG21629-PA 341 GG21629-PA 10..333 29..350 529 36.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11106-PA 360 GH11106-PA 10..360 7..360 1031 54.1 Plus
Dgri\GH10627-PA 338 GH10627-PA 1..327 32..348 540 36.4 Plus
Dgri\GH10625-PA 349 GH10625-PA 10..346 9..351 532 36.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG18094-PB 360 CG18094-PB 1..360 1..360 1935 100 Plus
CG18094-PA 360 CG18094-PA 1..360 1..360 1935 100 Plus
CG10195-PB 361 CG10195-PB 10..349 8..347 540 35.3 Plus
CG10195-PC 361 CG10195-PC 10..349 8..347 540 35.3 Plus
CG10194-PA 351 CG10194-PA 9..348 9..351 537 34.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18228-PA 358 GI18228-PA 3..358 2..360 1027 53.3 Plus
Dmoj\GI19813-PA 333 GI19813-PA 1..330 32..356 508 35.4 Plus
Dmoj\GI19791-PA 233 GI19791-PA 1..230 116..351 367 33.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21217-PA 362 GL21217-PA 4..362 2..360 1335 66.9 Plus
Dper\GL21100-PA 352 GL21100-PA 10..349 9..351 629 39.1 Plus
Dper\GL21101-PA 359 GL21101-PA 1..356 1..356 587 36.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28769-PA 362 GA28769-PA 4..362 2..360 1344 67.4 Plus
Dpse\GA10146-PA 352 GA10146-PA 10..349 9..351 629 39.1 Plus
Dpse\GA29071-PA 359 GA29071-PA 1..356 1..356 580 35.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17354-PA 360 GM17354-PA 1..360 1..360 1804 92.2 Plus
Dsec\GM17006-PA 351 GM17006-PA 1..348 1..351 538 34.9 Plus
Dsec\GM17007-PA 341 GM17007-PA 10..333 29..350 528 35.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24212-PA 223 GD24212-PA 1..221 1..226 1052 88.5 Plus
Dsim\GD24213-PA 118 GD24213-PA 1..118 243..360 639 94.9 Plus
Dsim\GD21756-PA 341 GD21756-PA 10..333 29..350 538 36.4 Plus
Dsim\GD21755-PA 351 GD21755-PA 1..348 1..351 538 34.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18136-PA 360 GJ18136-PA 7..360 3..360 1064 56 Plus
Dvir\GJ18098-PA 376 GJ18098-PA 17..371 8..354 598 37.8 Plus
Dvir\GJ18096-PA 346 GJ18096-PA 10..343 9..351 542 34.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18187-PA 358 GK18187-PA 6..358 2..360 1068 55 Plus
Dwil\GK24223-PA 340 GK24223-PA 7..332 5..329 580 37.4 Plus
Dwil\GK18202-PA 347 GK18202-PA 1..339 1..347 557 35.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13260-PA 361 GE13260-PA 3..361 2..360 1702 86.9 Plus
Dyak\GE12649-PA 365 GE12649-PA 10..353 8..347 549 35.5 Plus
Dyak\GE12648-PA 351 GE12648-PA 9..348 9..351 546 34.6 Plus

RT08607.hyp Sequence

Translation from 1 to 1082

> RT08607.hyp
MTTKTGTYRPSASLIVAAKEDSLEDYDYRLLLIKRTEKTSYALNHCVFPG
GVFDPIEDQSAKWITFFKSFGVTDEQLKMCRHNQDSPRPEFLSGGDHISR
DIALRLTALRETFEEVGILICTEQDDIQKWDSKSGHPRTVLLESSEHFEW
QHRVHNDASQFLELFRHYKVIPNIWSLQEWSIWRTAATANRKYDTVYYIT
MLDKYTRNIKLLLEPHEVASAHWLSPIEAWSSSQKAIIWLPFMLLYDIAR
LMNFYSFQELLNFSRQRSCNGSTMVQPVYYRCDDCMFGVLPGDELYPKEP
GACTQTIILSGSVDDLHRKSKQYNRYIVYDFHKVVLASNIPPCDGHLPLQ
PLVNNKLAKL*

RT08607.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG18094-PB 360 CG18094-PB 1..360 1..360 1935 100 Plus
CG18094-PA 360 CG18094-PA 1..360 1..360 1935 100 Plus
CG10195-PB 361 CG10195-PB 10..349 8..347 540 35.3 Plus
CG10195-PC 361 CG10195-PC 10..349 8..347 540 35.3 Plus
CG10194-PA 351 CG10194-PA 9..348 9..351 537 34.9 Plus