Clone RT08740 Report

Search the DGRC for RT08740

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:87
Well:40
Vector:pCR2.1
Associated Gene/TranscriptCG32750-RA
Protein status:RT08740.pep: gold
Sequenced Size:1572

Clone Sequence Records

RT08740.complete Sequence

1572 bp assembled on 2010-06-02

GenBank Submission: BT125050.1

> RT08740.complete
ATGGCTGTATTCCTCCGTCGATTTCTCTGGCTCATCAGTTTTACTTTGGT
TTTGACTGATGATAATTCCGTTGAGAATAAATTCTATATAGCTGGTGTAG
TGGAATATAGGCCAACGTTTATGGGCGGCACTTCGGAACAGCTGTTGCAA
GCGAATCTGGCTGGTTATCTGGAGATCATGGCATCTGGCAATGGCACTAC
GGACATCATAGTCTTTCCGGAGGCCACACTAAATAGTGTGATTACCCTGA
CAGCGGTGCCGAAATTTACGGAGCAAAGTTTGTGTGAAGAACAGGGAGAT
GATGATCCGGAAATAGCACCATTCCTAAGATCTTTGGCCTGTGCCGCCAG
GGAATATGGCACCTATTTGGTGGTCAATGTCAAGGAGCGTGTTTCGGAGC
AGTGTACTTCGGATGAGACATGTTCCAGTCGTGGCTATTCGATTCACAAT
ACCAACGTAGTGTTCGATAGACAAGGAGCGGTGATATCACGCTATAGGAA
ATGGAATCTTTACTTAGAACCATCCACCAATCGGACTGAATCCCCTGAAA
TAGCCACCTTTACAACGGATTTCAATGTGACCTTCGGTCATTTCATCTGC
TTTGATATGCTCTTTTATACGCCGGCTCAGGATTTGGTGGAGCAACTGGG
CATCCGCCATGTGATTGTCACCAAAATGTTCAACTCGGAGCTGCCTTTCC
TCACAGCCTCTCAATTTCAGCAGGGCTGGGCGTGGGCCAATCGGGTGAAC
CTTCTGGCCTCCGGAGGAAGTCTTCCGCAGGGTGGAATAAGTGGCAGTGG
AATTTACGCGGGTCAACAGGGCGCTCTGGCGAGACTCATGATCACGGATG
AGCTGGTGGGTCAGAGAAAGTTGCTCCTGGCTAAAGTTCCCCTCGATCCC
GAGGAGCCGATAGCCACGGATGAGATCTTGGAACCCGAAATCATGACTCC
TGTGAAACTAAAACTTCTGCAGCAACCGGAACTAAAGAACTTTACCACCT
GGGAGTTGCCCATGGTCCGGGGCAGTTCGGTGGACAAGAGAATATGCCAG
GAGGACTTGTGCTGCGAGTTCCGGGTCACTTGGACCCTGGAGGACACTCA
ACCGGAATATAACTACCGATTGGGAGTTTGGGTGGGACAAAGGCGCTACG
AGGAGGAGCAGTACAGTGCCATCCGGCTGTGTGGCCTGTTCGCCTGCAAA
GGTGCCAGTGTAGAGAGCTGCGGCCTGGTTAGCGAGGAGGAGGTACACCT
GCAGGATCACCGAGTTGTGTTCACCGACCTGCAGATCCTTGGCGAGTTTG
TACGGAGGCCACGACGTCTCATATTGCCCAGCACCCTTAGCTCCTCCAGT
TTCTATGCCCTGCAACCATCCCAATTAGCATGGTCCATGGAGGAATTGGC
TAATGTAACGCGGATTAAGATGGAGCTGCGACAACCGCACAGCCAGCTAA
TGACCTTCGCCATATATGGCAACTATTTCGATGAGTATGCAAATGGTGGA
GCTGGAAGATTGGGAACCCTGCTGTTTCTCCTAATCACGCCGCTAATTAT
GATGCATCTATTTCGGGAGTAG

RT08740.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32750-RA 1645 CG32750-RA 23..1594 1..1572 7845 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6086963..6087831 1572..704 4345 100 Minus
chrX 22417052 chrX 6087887..6088592 706..1 3500 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6194788..6195656 1572..704 4345 100 Minus
X 23542271 X 6195712..6196417 706..1 3515 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6202886..6203754 1572..704 4345 100 Minus
X 23527363 X 6203810..6204515 706..1 3515 99.8 Minus
Blast to na_te.dros performed on 2019-03-15 21:15:30 has no hits.

RT08740.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:16:17 Download gff for RT08740.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6086963..6087828 707..1572 100 <- Minus
chrX 6087887..6088592 1..706 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-06-02 16:21:21 Download gff for RT08740.complete
Subject Subject Range Query Range Percent Splice Strand
CG32750-RA 1..1572 1..1572 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:59:55 Download gff for RT08740.complete
Subject Subject Range Query Range Percent Splice Strand
CG32750-RA 1..1572 1..1572 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:42:14 Download gff for RT08740.complete
Subject Subject Range Query Range Percent Splice Strand
CG32750-RA 1..1572 1..1572 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:47:58 Download gff for RT08740.complete
Subject Subject Range Query Range Percent Splice Strand
CG32750-RA 1..1572 1..1572 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-02 16:21:21 Download gff for RT08740.complete
Subject Subject Range Query Range Percent Splice Strand
CG32750-RA 1..1572 1..1572 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:59:55 Download gff for RT08740.complete
Subject Subject Range Query Range Percent Splice Strand
CG32750-RA 1..1572 1..1572 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:42:14 Download gff for RT08740.complete
Subject Subject Range Query Range Percent Splice Strand
CG32750-RA 23..1594 1..1572 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:58 Download gff for RT08740.complete
Subject Subject Range Query Range Percent Splice Strand
CG32750-RA 23..1594 1..1572 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:16:17 Download gff for RT08740.complete
Subject Subject Range Query Range Percent Splice Strand
X 6194788..6195653 707..1572 100 <- Minus
X 6195712..6196417 1..706 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:16:17 Download gff for RT08740.complete
Subject Subject Range Query Range Percent Splice Strand
X 6194788..6195653 707..1572 100 <- Minus
X 6195712..6196417 1..706 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:16:17 Download gff for RT08740.complete
Subject Subject Range Query Range Percent Splice Strand
X 6194788..6195653 707..1572 100 <- Minus
X 6195712..6196417 1..706 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:42:14 Download gff for RT08740.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6088821..6089686 707..1572 100 <- Minus
arm_X 6089745..6090450 1..706 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:37:28 Download gff for RT08740.complete
Subject Subject Range Query Range Percent Splice Strand
X 6202886..6203751 707..1572 100 <- Minus
X 6203810..6204515 1..706 99   Minus

RT08740.pep Sequence

Translation from 0 to 1571

> RT08740.pep
MAVFLRRFLWLISFTLVLTDDNSVENKFYIAGVVEYRPTFMGGTSEQLLQ
ANLAGYLEIMASGNGTTDIIVFPEATLNSVITLTAVPKFTEQSLCEEQGD
DDPEIAPFLRSLACAAREYGTYLVVNVKERVSEQCTSDETCSSRGYSIHN
TNVVFDRQGAVISRYRKWNLYLEPSTNRTESPEIATFTTDFNVTFGHFIC
FDMLFYTPAQDLVEQLGIRHVIVTKMFNSELPFLTASQFQQGWAWANRVN
LLASGGSLPQGGISGSGIYAGQQGALARLMITDELVGQRKLLLAKVPLDP
EEPIATDEILEPEIMTPVKLKLLQQPELKNFTTWELPMVRGSSVDKRICQ
EDLCCEFRVTWTLEDTQPEYNYRLGVWVGQRRYEEEQYSAIRLCGLFACK
GASVESCGLVSEEEVHLQDHRVVFTDLQILGEFVRRPRRLILPSTLSSSS
FYALQPSQLAWSMEELANVTRIKMELRQPHSQLMTFAIYGNYFDEYANGG
AGRLGTLLFLLITPLIMMHLFRE*

RT08740.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20309-PA 523 GF20309-PA 5..489 8..499 1733 66.8 Plus
Dana\GF20308-PA 555 GF20308-PA 27..517 24..502 830 38.9 Plus
Dana\GF20307-PA 544 GF20307-PA 29..510 25..502 745 36.2 Plus
Dana\GF20306-PA 560 GF20306-PA 9..513 9..495 637 35.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17692-PA 524 GG17692-PA 1..524 1..523 2455 88.9 Plus
Dere\GG17690-PA 556 GG17690-PA 28..554 24..522 844 39.1 Plus
Dere\GG17689-PA 563 GG17689-PA 25..510 25..495 627 36.8 Plus
Dere\GG17691-PA 171 GG17691-PA 29..88 175..235 167 54.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24840-PA 544 GH24840-PA 27..497 27..495 1414 58.2 Plus
Dgri\GH24839-PA 575 GH24839-PA 33..535 18..502 794 37.5 Plus
Dgri\GH24838-PA 559 GH24838-PA 21..509 16..495 690 37.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG32750-PA 523 CG32750-PA 1..523 1..523 2720 100 Plus
vanin-like-PA 558 CG32754-PA 29..519 25..502 832 40.7 Plus
CG32751-PA 517 CG32751-PA 9..502 8..502 803 38.7 Plus
CG32751-PB 525 CG32751-PB 9..510 8..502 784 38.2 Plus
Btnd-PA 553 CG3599-PA 25..510 25..495 619 36.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16174-PA 558 GI16174-PA 26..516 28..497 1389 55.5 Plus
Dmoj\GI16173-PA 570 GI16173-PA 35..527 23..500 803 38.3 Plus
Dmoj\GI16171-PA 570 GI16171-PA 39..529 28..502 795 38 Plus
Dmoj\GI16172-PA 566 GI16172-PA 35..526 28..502 771 36.8 Plus
Dmoj\GI16170-PA 543 GI16170-PA 22..501 23..495 665 36.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21362-PA 523 GL21362-PA 24..518 25..516 1613 61.4 Plus
Dper\GL21361-PA 552 GL21361-PA 29..518 24..502 847 42.9 Plus
Dper\GL21358-PA 465 GL21358-PA 110..402 218..495 361 36 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23775-PA 524 GA23775-PA 24..521 25..518 1623 61.6 Plus
Dpse\GA17117-PA 552 GA17117-PA 29..518 24..502 850 43.1 Plus
Dpse\GA17549-PA 592 GA17549-PA 18..529 1..495 678 37.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12591-PA 523 GM12591-PA 1..523 1..523 2660 95 Plus
Dsec\GM12589-PA 558 GM12589-PA 28..554 24..522 849 40.1 Plus
Dsec\GM12590-PA 482 GM12590-PA 32..467 28..502 725 38.3 Plus
Dsec\GM12588-PA 336 GM12588-PA 162..293 370..495 170 35.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16209-PA 523 GD16209-PA 1..523 1..523 2668 95 Plus
Dsim\GD16207-PA 558 GD16207-PA 28..554 24..522 852 39.9 Plus
Dsim\GD16208-PA 516 GD16208-PA 32..501 28..502 832 40.4 Plus
Dsim\GD16205-PA 553 GD16205-PA 25..510 25..495 654 37.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16664-PA 540 GJ16664-PA 21..502 23..497 1434 56.8 Plus
Dvir\GJ16663-PA 591 GJ16663-PA 58..550 24..502 825 40 Plus
Dvir\GJ16662-PA 572 GJ16662-PA 1..515 1..495 695 36.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15373-PA 592 GK15373-PA 4..489 8..495 1333 54.5 Plus
Dwil\GK15353-PA 572 GK15353-PA 15..519 7..495 788 37.1 Plus
Dwil\GK17695-PA 556 GK17695-PA 16..489 29..493 710 38.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16480-PA 525 GE16480-PA 1..525 1..523 2405 87.2 Plus
Dyak\GE16478-PA 556 GE16478-PA 29..554 25..522 838 40.2 Plus
Dyak\GE16479-PA 516 GE16479-PA 9..501 8..502 819 38.9 Plus
Dyak\GE16477-PA 553 GE16477-PA 25..510 25..495 634 36.8 Plus

RT08740.hyp Sequence

Translation from 1 to 1571

> RT08740.hyp
MAVFLRRFLWLISFTLVLTDDNSVENKFYIAGVVEYRPTFMGGTSEQLLQ
ANLAGYLEIMASGNGTTDIIVFPEATLNSVITLTAVPKFTEQSLCEEQGD
DDPEIAPFLRSLACAAREYGTYLVVNVKERVSEQCTSDETCSSRGYSIHN
TNVVFDRQGAVISRYRKWNLYLEPSTNRTESPEIATFTTDFNVTFGHFIC
FDMLFYTPAQDLVEQLGIRHVIVTKMFNSELPFLTASQFQQGWAWANRVN
LLASGGSLPQGGISGSGIYAGQQGALARLMITDELVGQRKLLLAKVPLDP
EEPIATDEILEPEIMTPVKLKLLQQPELKNFTTWELPMVRGSSVDKRICQ
EDLCCEFRVTWTLEDTQPEYNYRLGVWVGQRRYEEEQYSAIRLCGLFACK
GASVESCGLVSEEEVHLQDHRVVFTDLQILGEFVRRPRRLILPSTLSSSS
FYALQPSQLAWSMEELANVTRIKMELRQPHSQLMTFAIYGNYFDEYANGG
AGRLGTLLFLLITPLIMMHLFRE*

RT08740.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32750-PA 523 CG32750-PA 1..523 1..523 2720 100 Plus
vanin-like-PA 558 CG32754-PA 29..519 25..502 832 40.7 Plus
CG32751-PA 517 CG32751-PA 9..502 8..502 803 38.7 Plus
CG32751-PB 525 CG32751-PB 9..510 8..502 784 38.2 Plus
Btd-PA 553 CG3599-PA 25..510 25..495 619 36.9 Plus