Clone RT09038 Report

Search the DGRC for RT09038

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:90
Well:38
Vector:pCR2.1
Associated Gene/TranscriptCG15545-RA
Protein status:RT09038.pep: gold
Sequenced Size:1773

Clone Sequence Records

RT09038.complete Sequence

1773 bp assembled on 2010-07-15

GenBank Submission: BT125058.1

> RT09038.complete
GCATTCCTTTTAGTTAGCTGTATATTAACAAGTTTGAGGTCAAATTACGC
TACTCAAAAAAGCCATCAATCTTTGCCTATTAACTATATTGTCGTACATT
TTGCGTATCTAATTTGCTTACTTTCCTATTAAGTCACATACCACAACCTA
AGCCCCCTCCACAGTTACAACTTCGAAGAAGTAAATGGCCATCGTTATGT
GTAATTACGGCCATAAAGAAACATTTTATTTATGCCCCCTGCCCCATCCG
ATAAGTTGGCGCTCTATTTCCTAGTGGAAATGCAAATAATGCCTCACTTT
GCGCGCGGTAAACTCTTTTTTTTACTCCATGTTGTTGTGGGTAGTAAGTC
CATGCGTGAAGCGGAGATTTCGATCTGCTACTGACTAGCTGCTCACCTGG
CAGGTTTCAATTGCGATTGCCATTGCGAAACATGTTGCAGCAGGTTCGAG
GAAGCTAGCATAAAACTGTTGCGTCCGTTGGCTGAACTTTCAGTTTCGTT
GGGGCCACGCTGGTGGTTAATACCATTGAAGAGAGTTTTCACAAGACGCA
ATCACCCCGAAAAAGCCGCCACCCAAAATGAAAGTGTGCTGGAATTTCTT
TGCTGCGGCGGTGCTGTTAGTGACGGTCACCTCGGGGCTGAGACCCCCAC
GATCCTACTATCGGAGGAGCTACTTCAGTGCAGTGGGTTCAGGATCTGGG
CACGCACCCAGCTCTCTGCCAGGACCAGTGAGAATAGGACCCGCTAGTTA
CTTCCGTGCCGATCTGCAAACAAATGAGAGCAAGCACCGGCCACTGAGCA
AAAAGTATCCCAAGAAGAGCCACTACAGACCCTACGGATCGCAAGAGGAA
GAGGACGAACAACGCTACAATTCCGCGGAATATTCAGGAGAGTCCTCCGT
TCAGGATAGTCGGGAATACACGATTGGCACCCAAATTCGCGTCCAGCATC
CCATAACCGTGCCCAAGAAGTCCAGTTCCGGCTACCAGAAGCAGCCAAAA
TATGTGACGGCCATTCCATACAAGGCATCTGGTTATGGATCCGATATCCA
CAAGCCCTCCGGTTATGGATCCGATGTTCATATTGGATCTGGAGAGGATG
TTGGACCTCCTCCGAAAAGATCGAAGTGGACCCCAGTGCAATACGAATCG
GAAGCCGATCCCTTCCATCTAGTGCCACCTCCAAAGGCAACCGTCGCCTC
CAGCAGCAACTCATATAGTGTTTATGAGCCCGAACACGATGACTACGAGG
TGGTTCCAGTGCCCCGACCAAAAAGCCACGATCGCTACAAAAGCGTCGCC
TCCAAGAAACAAGTAGAGGCCTACCTAGAGGATCAGCAGAAGCTGCTCGA
CGAGGCCATCAAAGTTCAGCTTTTGAACAATCCGAAGCTGCAAAAATTCT
TCAAGGCCCAGGCGCAGGAACAGGAGCGGGAATCGCGGCCAGACCTCGAA
ATCGAGGATTTTGAGGCCTATCCGCCCAACTTTTCGGGGCCCGGACACCT
GCGCAACAAGTACATCGAACACCCACCATCTTCTCCGCCGAAGGGATCTC
GATCACGCCGGCGTCCTCCAAGTGGAGATCTTAACCGACCACCCAAGACC
ATCATCAAACCGAAAAGGAAATACCGATCCACAGCACTGGTCATCAATGT
GTGAGAGGGATTACTAAGTCCTGACTTAATCGTTAATTAAAATATCGTTT
ATAAATACTTAGAGTAGTCTTGTTGTACAGAGTATTTTTAAGTAATAAAA
GACCATTTATTTTAAATGCCCCT

RT09038.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15545.a 1774 CG15545.a 1..1774 1..1773 8785 99.7 Plus
CG15545-RA 1436 CG15545-RA 1..1433 341..1773 7150 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26693382..26694299 1773..856 4575 99.9 Minus
chr3R 27901430 chr3R 26694715..26695311 595..1 2845 98.8 Minus
chr3R 27901430 chr3R 26694406..26694651 841..596 1215 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30870939..30871871 1773..841 4665 100 Minus
3R 32079331 3R 30872263..30872858 595..1 2885 99.3 Minus
3R 32079331 3R 30871954..30872199 841..596 1230 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30611770..30612702 1773..841 4665 100 Minus
3R 31820162 3R 30613094..30613689 595..1 2895 99.3 Minus
3R 31820162 3R 30612785..30613030 841..596 1230 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:09:03 has no hits.

RT09038.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:09:58 Download gff for RT09038.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26693382..26694322 842..1773 98 <- Minus
chr3R 26694406..26694651 596..841 99 <- Minus
chr3R 26694715..26695311 1..595 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-15 10:07:12 Download gff for RT09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG15545-RA 1..1077 578..1654 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:01:11 Download gff for RT09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG15545-RA 1..1077 578..1654 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:16:18 Download gff for RT09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG15545-RA 1..1077 578..1654 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:27:15 Download gff for RT09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG15545-RA 1..1077 578..1654 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:07:11 Download gff for RT09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG15545-RA 1..1077 578..1654 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:01:11 Download gff for RT09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG15545-RA 1..1077 578..1654 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:16:18 Download gff for RT09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG15545-RA 1..1267 507..1773 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:27:15 Download gff for RT09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG15545-RA 1..1267 507..1773 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:09:58 Download gff for RT09038.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30870939..30871870 842..1773 100 <- Minus
3R 30871954..30872199 596..841 100 <- Minus
3R 30872263..30872858 1..595 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:09:58 Download gff for RT09038.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30870939..30871870 842..1773 100 <- Minus
3R 30871954..30872199 596..841 100 <- Minus
3R 30872263..30872858 1..595 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:09:58 Download gff for RT09038.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30870939..30871870 842..1773 100 <- Minus
3R 30871954..30872199 596..841 100 <- Minus
3R 30872263..30872858 1..595 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:16:18 Download gff for RT09038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26697676..26697921 596..841 100 <- Minus
arm_3R 26696661..26697592 842..1773 100 <- Minus
arm_3R 26697985..26698580 1..595 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:36:14 Download gff for RT09038.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30611770..30612701 842..1773 100 <- Minus
3R 30612785..30613030 596..841 100 <- Minus
3R 30613094..30613689 1..595 99   Minus

RT09038.hyp Sequence

Translation from 577 to 1653

> RT09038.hyp
MKVCWNFFAAAVLLVTVTSGLRPPRSYYRRSYFSAVGSGSGHAPSSLPGP
VRIGPASYFRADLQTNESKHRPLSKKYPKKSHYRPYGSQEEEDEQRYNSA
EYSGESSVQDSREYTIGTQIRVQHPITVPKKSSSGYQKQPKYVTAIPYKA
SGYGSDIHKPSGYGSDVHIGSGEDVGPPPKRSKWTPVQYESEADPFHLVP
PPKATVASSSNSYSVYEPEHDDYEVVPVPRPKSHDRYKSVASKKQVEAYL
EDQQKLLDEAIKVQLLNNPKLQKFFKAQAQEQERESRPDLEIEDFEAYPP
NFSGPGHLRNKYIEHPPSSPPKGSRSRRRPPSGDLNRPPKTIIKPKRKYR
STALVINV*

RT09038.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG15545-PA 358 CG15545-PA 1..358 1..358 1904 100 Plus

RT09038.pep Sequence

Translation from 577 to 1653

> RT09038.pep
MKVCWNFFAAAVLLVTVTSGLRPPRSYYRRSYFSAVGSGSGHAPSSLPGP
VRIGPASYFRADLQTNESKHRPLSKKYPKKSHYRPYGSQEEEDEQRYNSA
EYSGESSVQDSREYTIGTQIRVQHPITVPKKSSSGYQKQPKYVTAIPYKA
SGYGSDIHKPSGYGSDVHIGSGEDVGPPPKRSKWTPVQYESEADPFHLVP
PPKATVASSSNSYSVYEPEHDDYEVVPVPRPKSHDRYKSVASKKQVEAYL
EDQQKLLDEAIKVQLLNNPKLQKFFKAQAQEQERESRPDLEIEDFEAYPP
NFSGPGHLRNKYIEHPPSSPPKGSRSRRRPPSGDLNRPPKTIIKPKRKYR
STALVINV*

RT09038.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23310-PA 551 GF23310-PA 1..351 1..357 1275 77 Plus
Dana\GF23310-PA 551 GF23310-PA 346..546 118..324 802 76.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11908-PA 361 GG11908-PA 1..361 1..358 1713 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14096-PA 342 GH14096-PA 1..342 1..358 956 57.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15545-PA 358 CG15545-PA 1..358 1..358 1904 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10630-PA 342 GI10630-PA 1..342 1..358 983 59.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13986-PA 332 GL13986-PA 1..288 1..276 940 72.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13802-PA 377 GA13802-PA 1..377 1..358 1185 73.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12128-PA 361 GM12128-PA 1..361 1..358 1832 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16818-PA 361 GD16818-PA 1..361 1..358 1827 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22982-PA 343 GJ22982-PA 1..343 1..358 954 62.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13109-PA 360 GK13109-PA 1..360 1..358 1060 68 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23357-PA 361 GE23357-PA 1..361 1..358 1748 95.6 Plus