BDGP Sequence Production Resources |
Search the DGRC for RT09038
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 90 |
Well: | 38 |
Vector: | pCR2.1 |
Associated Gene/Transcript | CG15545-RA |
Protein status: | RT09038.pep: gold |
Sequenced Size: | 1773 |
1773 bp assembled on 2010-07-15
GenBank Submission: BT125058.1
> RT09038.complete GCATTCCTTTTAGTTAGCTGTATATTAACAAGTTTGAGGTCAAATTACGC TACTCAAAAAAGCCATCAATCTTTGCCTATTAACTATATTGTCGTACATT TTGCGTATCTAATTTGCTTACTTTCCTATTAAGTCACATACCACAACCTA AGCCCCCTCCACAGTTACAACTTCGAAGAAGTAAATGGCCATCGTTATGT GTAATTACGGCCATAAAGAAACATTTTATTTATGCCCCCTGCCCCATCCG ATAAGTTGGCGCTCTATTTCCTAGTGGAAATGCAAATAATGCCTCACTTT GCGCGCGGTAAACTCTTTTTTTTACTCCATGTTGTTGTGGGTAGTAAGTC CATGCGTGAAGCGGAGATTTCGATCTGCTACTGACTAGCTGCTCACCTGG CAGGTTTCAATTGCGATTGCCATTGCGAAACATGTTGCAGCAGGTTCGAG GAAGCTAGCATAAAACTGTTGCGTCCGTTGGCTGAACTTTCAGTTTCGTT GGGGCCACGCTGGTGGTTAATACCATTGAAGAGAGTTTTCACAAGACGCA ATCACCCCGAAAAAGCCGCCACCCAAAATGAAAGTGTGCTGGAATTTCTT TGCTGCGGCGGTGCTGTTAGTGACGGTCACCTCGGGGCTGAGACCCCCAC GATCCTACTATCGGAGGAGCTACTTCAGTGCAGTGGGTTCAGGATCTGGG CACGCACCCAGCTCTCTGCCAGGACCAGTGAGAATAGGACCCGCTAGTTA CTTCCGTGCCGATCTGCAAACAAATGAGAGCAAGCACCGGCCACTGAGCA AAAAGTATCCCAAGAAGAGCCACTACAGACCCTACGGATCGCAAGAGGAA GAGGACGAACAACGCTACAATTCCGCGGAATATTCAGGAGAGTCCTCCGT TCAGGATAGTCGGGAATACACGATTGGCACCCAAATTCGCGTCCAGCATC CCATAACCGTGCCCAAGAAGTCCAGTTCCGGCTACCAGAAGCAGCCAAAA TATGTGACGGCCATTCCATACAAGGCATCTGGTTATGGATCCGATATCCA CAAGCCCTCCGGTTATGGATCCGATGTTCATATTGGATCTGGAGAGGATG TTGGACCTCCTCCGAAAAGATCGAAGTGGACCCCAGTGCAATACGAATCG GAAGCCGATCCCTTCCATCTAGTGCCACCTCCAAAGGCAACCGTCGCCTC CAGCAGCAACTCATATAGTGTTTATGAGCCCGAACACGATGACTACGAGG TGGTTCCAGTGCCCCGACCAAAAAGCCACGATCGCTACAAAAGCGTCGCC TCCAAGAAACAAGTAGAGGCCTACCTAGAGGATCAGCAGAAGCTGCTCGA CGAGGCCATCAAAGTTCAGCTTTTGAACAATCCGAAGCTGCAAAAATTCT TCAAGGCCCAGGCGCAGGAACAGGAGCGGGAATCGCGGCCAGACCTCGAA ATCGAGGATTTTGAGGCCTATCCGCCCAACTTTTCGGGGCCCGGACACCT GCGCAACAAGTACATCGAACACCCACCATCTTCTCCGCCGAAGGGATCTC GATCACGCCGGCGTCCTCCAAGTGGAGATCTTAACCGACCACCCAAGACC ATCATCAAACCGAAAAGGAAATACCGATCCACAGCACTGGTCATCAATGT GTGAGAGGGATTACTAAGTCCTGACTTAATCGTTAATTAAAATATCGTTT ATAAATACTTAGAGTAGTCTTGTTGTACAGAGTATTTTTAAGTAATAAAA GACCATTTATTTTAAATGCCCCT
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 26693382..26694299 | 1773..856 | 4575 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 26694715..26695311 | 595..1 | 2845 | 98.8 | Minus |
chr3R | 27901430 | chr3R | 26694406..26694651 | 841..596 | 1215 | 99.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 30870939..30871871 | 1773..841 | 4665 | 100 | Minus |
3R | 32079331 | 3R | 30872263..30872858 | 595..1 | 2885 | 99.3 | Minus |
3R | 32079331 | 3R | 30871954..30872199 | 841..596 | 1230 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 30611770..30612702 | 1773..841 | 4665 | 100 | Minus |
3R | 31820162 | 3R | 30613094..30613689 | 595..1 | 2895 | 99.3 | Minus |
3R | 31820162 | 3R | 30612785..30613030 | 841..596 | 1230 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 26693382..26694322 | 842..1773 | 98 | <- | Minus |
chr3R | 26694406..26694651 | 596..841 | 99 | <- | Minus |
chr3R | 26694715..26695311 | 1..595 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15545-RA | 1..1077 | 578..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15545-RA | 1..1077 | 578..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15545-RA | 1..1077 | 578..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15545-RA | 1..1077 | 578..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15545-RA | 1..1077 | 578..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15545-RA | 1..1077 | 578..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15545-RA | 1..1267 | 507..1773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15545-RA | 1..1267 | 507..1773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30870939..30871870 | 842..1773 | 100 | <- | Minus |
3R | 30871954..30872199 | 596..841 | 100 | <- | Minus |
3R | 30872263..30872858 | 1..595 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30870939..30871870 | 842..1773 | 100 | <- | Minus |
3R | 30871954..30872199 | 596..841 | 100 | <- | Minus |
3R | 30872263..30872858 | 1..595 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30870939..30871870 | 842..1773 | 100 | <- | Minus |
3R | 30871954..30872199 | 596..841 | 100 | <- | Minus |
3R | 30872263..30872858 | 1..595 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 26697676..26697921 | 596..841 | 100 | <- | Minus |
arm_3R | 26696661..26697592 | 842..1773 | 100 | <- | Minus |
arm_3R | 26697985..26698580 | 1..595 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30611770..30612701 | 842..1773 | 100 | <- | Minus |
3R | 30612785..30613030 | 596..841 | 100 | <- | Minus |
3R | 30613094..30613689 | 1..595 | 99 | Minus |
Translation from 577 to 1653
> RT09038.hyp MKVCWNFFAAAVLLVTVTSGLRPPRSYYRRSYFSAVGSGSGHAPSSLPGP VRIGPASYFRADLQTNESKHRPLSKKYPKKSHYRPYGSQEEEDEQRYNSA EYSGESSVQDSREYTIGTQIRVQHPITVPKKSSSGYQKQPKYVTAIPYKA SGYGSDIHKPSGYGSDVHIGSGEDVGPPPKRSKWTPVQYESEADPFHLVP PPKATVASSSNSYSVYEPEHDDYEVVPVPRPKSHDRYKSVASKKQVEAYL EDQQKLLDEAIKVQLLNNPKLQKFFKAQAQEQERESRPDLEIEDFEAYPP NFSGPGHLRNKYIEHPPSSPPKGSRSRRRPPSGDLNRPPKTIIKPKRKYR STALVINV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15545-PA | 358 | CG15545-PA | 1..358 | 1..358 | 1904 | 100 | Plus |
Translation from 577 to 1653
> RT09038.pep MKVCWNFFAAAVLLVTVTSGLRPPRSYYRRSYFSAVGSGSGHAPSSLPGP VRIGPASYFRADLQTNESKHRPLSKKYPKKSHYRPYGSQEEEDEQRYNSA EYSGESSVQDSREYTIGTQIRVQHPITVPKKSSSGYQKQPKYVTAIPYKA SGYGSDIHKPSGYGSDVHIGSGEDVGPPPKRSKWTPVQYESEADPFHLVP PPKATVASSSNSYSVYEPEHDDYEVVPVPRPKSHDRYKSVASKKQVEAYL EDQQKLLDEAIKVQLLNNPKLQKFFKAQAQEQERESRPDLEIEDFEAYPP NFSGPGHLRNKYIEHPPSSPPKGSRSRRRPPSGDLNRPPKTIIKPKRKYR STALVINV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23310-PA | 551 | GF23310-PA | 1..351 | 1..357 | 1275 | 77 | Plus |
Dana\GF23310-PA | 551 | GF23310-PA | 346..546 | 118..324 | 802 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11908-PA | 361 | GG11908-PA | 1..361 | 1..358 | 1713 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14096-PA | 342 | GH14096-PA | 1..342 | 1..358 | 956 | 57.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15545-PA | 358 | CG15545-PA | 1..358 | 1..358 | 1904 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10630-PA | 342 | GI10630-PA | 1..342 | 1..358 | 983 | 59.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13986-PA | 332 | GL13986-PA | 1..288 | 1..276 | 940 | 72.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13802-PA | 377 | GA13802-PA | 1..377 | 1..358 | 1185 | 73.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12128-PA | 361 | GM12128-PA | 1..361 | 1..358 | 1832 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16818-PA | 361 | GD16818-PA | 1..361 | 1..358 | 1827 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22982-PA | 343 | GJ22982-PA | 1..343 | 1..358 | 954 | 62.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13109-PA | 360 | GK13109-PA | 1..360 | 1..358 | 1060 | 68 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23357-PA | 361 | GE23357-PA | 1..361 | 1..358 | 1748 | 95.6 | Plus |