![]() | BDGP Sequence Production Resources |
Search the DGRC for RT09047
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 90 |
Well: | 47 |
Vector: | pCR2.1 |
Associated Gene/Transcript | CG13300-RA |
Protein status: | RT09047.pep: gold |
Sequenced Size: | 2355 |
2355 bp assembled on 2010-07-15
GenBank Submission: BT125059.1
> RT09047.complete GAAAAGAACCAGAAAACAGGCGAAGCCCGGCGAAAATCCCACTCCATTCA CCATGATCCAAACGGAGGACTAACGGACAACTGCGATAACTGGCAATAAG CGAGGAGGAGCGTCAAAGGATTCCAGCTTTGCCCCTTTATCCGGAAAACT CCCTCAATCCCCCACCCGGAAAACTCAAGGAAAATGCCATCCGTAGCAAA CAGCAACTACAGCAACGATGCGCGTCTCGGTTACGTCGTAAATCAAGTTG CATCCGTATCTGTGTCCATATCCGCATCCGCATCCGCCCTGCCCTCCGTA TCCGCATCCGAATTTCCTACTTTCAGTCCACCGCGGATTGCCAGTCTGGT GGCCAGCAGCTCCGCGGAGGACTTGAGCAGCTTTGGTGACGTGACGTTCG ACATCTTCGATGACGATGACGACTTGTTCGGCTCGCCAATGGCCTTTGAT GCCAGCGAACAGGGCCTCTGGAACGGACGCTTTGTACCGCCACCGCCCCG CCCGCCTTTCTTCGTCGACGAGCCGGTGCTGAGCGACGGCCTGACCACGT GTGATTTGTGCTCCTGGGCGATGCCCACCAAGAGCACATTCATGTTCGAG GGAACGATAGAAAAGGCCACAGAACTGGGCTGGCCACTGACTCTGATCAT CGTGTCCGTGTTGTCGGCGCTGCTAGGCGCCATCATCATGATTGCCGTGG TGCGCTGCCGGCGCAAAAAGTCCTCCAACAATCGCAACGACACGCACGTG CAATGGTGGTCTCGCAACAAACGCGCCCACGGCAACGGATTGAATGGCGC GGGCGGGGCAAGTGGAGCGGCGGGTGGTGCCGGCGGCAATGTGCACCACC ACAACGGCAGCAGCAGCAACATAAACAACAACCACCTGAGGAGGAGCAAC ATCTACACGGCCCACCCGGCGGACAGCATACGAGGTCTGCAACCGCTGCC GGTGGTGCTGCCTCTGCCACTGTCATTGCCCCACCCACCTTCTGGTGGAG CCTCGCCAGCGTCGTCGTCGACCACACCGCCTGCTACACAGCAGCAGCAA CATCAGCCGTTGCAACAGCAGCAGTACTTCCATCCATACCAGCAGCAACA GCATGTGCACCACTCGCATACGCACCACCATCACACGCACCACCATGTGC CGCTGTATCCACACGACTGTGACGAGGATGCCGCCTACGAGGAACCGGAG TACCATCAGCCGCAGCAGCTGCACTCGGTCAACAGCAGTAGTTCGTTGTC CTCGATGGGATCGTCATCGCTGCCACAGGAGGCAAGCAATTCCCGAGCCA CCCACTGGCCACCGGGTGCCACATCAGCCACCATGGTCATAGCCAGCTGA GAAACGGGCCAGGACTGCGCCTGGATTTGGCAGCAGTAATGTGAATGGGT CTGTGGACCCGTTTCACTTAAGATGCAGCGCACATGGATGGGTGCAGATC ATAAAGGGGATTACACGTAACAATTTTGTGAAGTTTATTTTTGCCAGTTC ATCCAGGGACTCCCTAAATGTATCTGTCTGTCGGTCTGCCTGTGTGTCGC CAATTGGGAAAACCGAAACGAATTTAGTGTCACTTCCGTTTCCGTTTCGC AAACTATCGAGTCAGACAGGCGAGAGGGTTGCGGTGTGGCGTGGCGTGGC CACAGGACATGCTCTTTACATGCCATGCACGTTTCATCCTTTATTGCCGC TCGGCATTAGAACAGGGATTTCGTCGGATTAAAGCAAATAAAGGGCGTGC TTTCTGTTTGCACCCAACTGGCAACTGCCGATGATGCCACAAGTTTAAAT CGGAGCAGCCAGCATTGTTACGGGTATATCGAACTGAGCCCCCCAGGGAT ATATAAGTCATTTCAATGGGTATGCCACAGTTGAGTCTGGTATAGGACCA ACATTTGCCACTTGGATTTTGTTTAAATAGACATTTTCAGCTTAAGCCTT GTGGGCAAATGTGTGCGAAGCATATTCTGGGAACCTGTCCCGGGCAGACA CTGGTCCAGAACTTTGTGGCTTTTTTGACTCCATTCCGCTCTTGTATCGC AATGACGAGAGCAAATGGGCTTTGAAACTGGTAAAAAGTAACGAACGTAA AACAAATAACGATGAGGCGAAAAGTGAAGAGAAAGTGAGAAAAAGAAGTC GCAATATCATCCGCAAAATCATTAATCAAATTATGAGCTCAAGCATCTAA TAGCATTTGCATTTTTTAATAGCCACTCGTCGTAATAACAAGCCCATGAC AAGCATATCAAACATAAGCTCAACAAGCCAACAGCCAACAAAAGTACTTA AAACAATCAAACATTGCAGCAACTTAAATGTAAATGCAAAAGTAAACAAA CTCGC
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 6322492..6324111 | 2355..739 | 7960 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 6324954..6325562 | 610..1 | 2925 | 99 | Minus |
chr3L | 24539361 | chr3L | 6324539..6324669 | 739..609 | 655 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 6330025..6331641 | 2355..739 | 8085 | 100 | Minus |
3L | 28110227 | 3L | 6332470..6333079 | 610..1 | 3035 | 99.8 | Minus |
3L | 28110227 | 3L | 6332064..6332194 | 739..609 | 655 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 6323125..6324741 | 2355..739 | 8085 | 100 | Minus |
3L | 28103327 | 3L | 6325570..6326179 | 610..1 | 3035 | 99.8 | Minus |
3L | 28103327 | 3L | 6325164..6325294 | 739..609 | 655 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2286..2535 | 827..1072 | 204 | 56.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..7035 | 843..1142 | 174 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2396..2711 | 845..1157 | 166 | 55.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..7197 | 843..1237 | 165 | 54.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2641 | 831..1145 | 155 | 54.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6939 | 845..1073 | 152 | 55.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6830 | 843..909 | 146 | 73.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2854 | 838..1240 | 144 | 54.9 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3264..3345 | 831..906 | 144 | 68.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6821..6915 | 831..928 | 139 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..2859 | 844..1080 | 134 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2789..2868 | 843..915 | 132 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2478..2546 | 834..905 | 118 | 66.7 | Plus |
Tabor | 7345 | Tabor TABOR 7345bp | 5362..5448 | 2060..2148 | 116 | 60.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 6322492..6324110 | 740..2355 | 99 | <- | Minus |
chr3L | 6324539..6324667 | 611..739 | 100 | <- | Minus |
chr3L | 6324954..6325562 | 1..610 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13300-RA | 1..1167 | 184..1350 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13300-RA | 1..1167 | 184..1350 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13300-RA | 1..1167 | 184..1350 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13300-RA | 1..1167 | 184..1350 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13300-RA | 1..1167 | 184..1350 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13300-RA | 1248..2881 | 1..1634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13300-RA | 1248..3602 | 1..2355 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13300-RA | 1248..3602 | 1..2355 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6330025..6331640 | 740..2355 | 100 | <- | Minus |
3L | 6332064..6332192 | 611..739 | 100 | <- | Minus |
3L | 6332470..6333079 | 1..610 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6330025..6331640 | 740..2355 | 100 | <- | Minus |
3L | 6332064..6332192 | 611..739 | 100 | <- | Minus |
3L | 6332470..6333079 | 1..610 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6330025..6331640 | 740..2355 | 100 | <- | Minus |
3L | 6332064..6332192 | 611..739 | 100 | <- | Minus |
3L | 6332470..6333079 | 1..610 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 6323125..6324740 | 740..2355 | 100 | <- | Minus |
arm_3L | 6325164..6325292 | 611..739 | 100 | <- | Minus |
arm_3L | 6325570..6326179 | 1..610 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6325164..6325292 | 611..739 | 100 | <- | Minus |
3L | 6323125..6324740 | 740..2355 | 100 | <- | Minus |
3L | 6325570..6326179 | 1..610 | 99 | Minus |
Translation from 183 to 1349
> RT09047.pep MPSVANSNYSNDARLGYVVNQVASVSVSISASASALPSVSASEFPTFSPP RIASLVASSSAEDLSSFGDVTFDIFDDDDDLFGSPMAFDASEQGLWNGRF VPPPPRPPFFVDEPVLSDGLTTCDLCSWAMPTKSTFMFEGTIEKATELGW PLTLIIVSVLSALLGAIIMIAVVRCRRKKSSNNRNDTHVQWWSRNKRAHG NGLNGAGGASGAAGGAGGNVHHHNGSSSNINNNHLRRSNIYTAHPADSIR GLQPLPVVLPLPLSLPHPPSGGASPASSSTTPPATQQQQHQPLQQQQYFH PYQQQQHVHHSHTHHHHTHHHVPLYPHDCDEDAAYEEPEYHQPQQLHSVN SSSSLSSMGSSSLPQEASNSRATHWPPGATSATMVIAS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10901-PA | 398 | GF10901-PA | 15..398 | 12..388 | 961 | 75.5 | Plus |
Dana\GF23536-PA | 389 | GF23536-PA | 49..184 | 70..200 | 359 | 55.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14060-PA | 396 | GG14060-PA | 1..396 | 1..388 | 1975 | 96 | Plus |
Dere\GG15344-PA | 386 | GG15344-PA | 52..162 | 70..200 | 195 | 37.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16276-PA | 397 | GH16276-PA | 36..397 | 11..388 | 840 | 65.9 | Plus |
Dgri\GH15159-PA | 372 | GH15159-PA | 82..142 | 80..142 | 174 | 60.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13300-PA | 388 | CG13300-PA | 1..388 | 1..388 | 2073 | 100 | Plus |
CG42747-PC | 404 | CG42747-PC | 33..320 | 53..370 | 420 | 33.8 | Plus |
sd-PQ | 625 | CG8544-PQ | 139..284 | 201..342 | 185 | 34.6 | Plus |
na-PG | 2224 | CG1517-PG | 14..176 | 193..361 | 163 | 31.4 | Plus |
na-PF | 2233 | CG1517-PF | 14..176 | 193..361 | 163 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13217-PA | 388 | GI13217-PA | 1..388 | 1..388 | 902 | 64 | Plus |
Dmoj\GI12098-PA | 369 | GI12098-PA | 83..143 | 80..142 | 174 | 60.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22518-PA | 500 | GL22518-PA | 1..269 | 1..250 | 761 | 77 | Plus |
Dper\GL20425-PA | 184 | GL20425-PA | 102..184 | 322..388 | 151 | 53.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12184-PA | 475 | GA12184-PA | 1..269 | 1..250 | 776 | 77.1 | Plus |
Dpse\GA24741-PA | 422 | GA24741-PA | 96..204 | 80..200 | 208 | 46.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13842-PA | 384 | GM13842-PA | 1..384 | 1..388 | 1980 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13127-PA | 387 | GD13127-PA | 1..387 | 1..388 | 2007 | 98.7 | Plus |
Dsim\GD13956-PA | 131 | GD13956-PA | 68..128 | 80..142 | 172 | 65.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11992-PA | 376 | GJ11992-PA | 31..250 | 11..251 | 754 | 80.1 | Plus |
Dvir\GJ13372-PA | 365 | GJ13372-PA | 13..141 | 19..142 | 179 | 40.2 | Plus |
Translation from 183 to 1349
> RT09047.hyp MPSVANSNYSNDARLGYVVNQVASVSVSISASASALPSVSASEFPTFSPP RIASLVASSSAEDLSSFGDVTFDIFDDDDDLFGSPMAFDASEQGLWNGRF VPPPPRPPFFVDEPVLSDGLTTCDLCSWAMPTKSTFMFEGTIEKATELGW PLTLIIVSVLSALLGAIIMIAVVRCRRKKSSNNRNDTHVQWWSRNKRAHG NGLNGAGGASGAAGGAGGNVHHHNGSSSNINNNHLRRSNIYTAHPADSIR GLQPLPVVLPLPLSLPHPPSGGASPASSSTTPPATQQQQHQPLQQQQYFH PYQQQQHVHHSHTHHHHTHHHVPLYPHDCDEDAAYEEPEYHQPQQLHSVN SSSSLSSMGSSSLPQEASNSRATHWPPGATSATMVIAS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13300-PA | 388 | CG13300-PA | 1..388 | 1..388 | 2073 | 100 | Plus |
CG42747-PC | 404 | CG42747-PC | 33..320 | 53..370 | 420 | 33.8 | Plus |
sd-PQ | 625 | CG8544-PQ | 139..284 | 201..342 | 185 | 34.6 | Plus |
na-PG | 2224 | CG1517-PG | 14..176 | 193..361 | 163 | 31.4 | Plus |
na-PF | 2233 | CG1517-PF | 14..176 | 193..361 | 163 | 31.4 | Plus |