Clone RT09047 Report

Search the DGRC for RT09047

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:90
Well:47
Vector:pCR2.1
Associated Gene/TranscriptCG13300-RA
Protein status:RT09047.pep: gold
Sequenced Size:2355

Clone Sequence Records

RT09047.complete Sequence

2355 bp assembled on 2010-07-15

GenBank Submission: BT125059.1

> RT09047.complete
GAAAAGAACCAGAAAACAGGCGAAGCCCGGCGAAAATCCCACTCCATTCA
CCATGATCCAAACGGAGGACTAACGGACAACTGCGATAACTGGCAATAAG
CGAGGAGGAGCGTCAAAGGATTCCAGCTTTGCCCCTTTATCCGGAAAACT
CCCTCAATCCCCCACCCGGAAAACTCAAGGAAAATGCCATCCGTAGCAAA
CAGCAACTACAGCAACGATGCGCGTCTCGGTTACGTCGTAAATCAAGTTG
CATCCGTATCTGTGTCCATATCCGCATCCGCATCCGCCCTGCCCTCCGTA
TCCGCATCCGAATTTCCTACTTTCAGTCCACCGCGGATTGCCAGTCTGGT
GGCCAGCAGCTCCGCGGAGGACTTGAGCAGCTTTGGTGACGTGACGTTCG
ACATCTTCGATGACGATGACGACTTGTTCGGCTCGCCAATGGCCTTTGAT
GCCAGCGAACAGGGCCTCTGGAACGGACGCTTTGTACCGCCACCGCCCCG
CCCGCCTTTCTTCGTCGACGAGCCGGTGCTGAGCGACGGCCTGACCACGT
GTGATTTGTGCTCCTGGGCGATGCCCACCAAGAGCACATTCATGTTCGAG
GGAACGATAGAAAAGGCCACAGAACTGGGCTGGCCACTGACTCTGATCAT
CGTGTCCGTGTTGTCGGCGCTGCTAGGCGCCATCATCATGATTGCCGTGG
TGCGCTGCCGGCGCAAAAAGTCCTCCAACAATCGCAACGACACGCACGTG
CAATGGTGGTCTCGCAACAAACGCGCCCACGGCAACGGATTGAATGGCGC
GGGCGGGGCAAGTGGAGCGGCGGGTGGTGCCGGCGGCAATGTGCACCACC
ACAACGGCAGCAGCAGCAACATAAACAACAACCACCTGAGGAGGAGCAAC
ATCTACACGGCCCACCCGGCGGACAGCATACGAGGTCTGCAACCGCTGCC
GGTGGTGCTGCCTCTGCCACTGTCATTGCCCCACCCACCTTCTGGTGGAG
CCTCGCCAGCGTCGTCGTCGACCACACCGCCTGCTACACAGCAGCAGCAA
CATCAGCCGTTGCAACAGCAGCAGTACTTCCATCCATACCAGCAGCAACA
GCATGTGCACCACTCGCATACGCACCACCATCACACGCACCACCATGTGC
CGCTGTATCCACACGACTGTGACGAGGATGCCGCCTACGAGGAACCGGAG
TACCATCAGCCGCAGCAGCTGCACTCGGTCAACAGCAGTAGTTCGTTGTC
CTCGATGGGATCGTCATCGCTGCCACAGGAGGCAAGCAATTCCCGAGCCA
CCCACTGGCCACCGGGTGCCACATCAGCCACCATGGTCATAGCCAGCTGA
GAAACGGGCCAGGACTGCGCCTGGATTTGGCAGCAGTAATGTGAATGGGT
CTGTGGACCCGTTTCACTTAAGATGCAGCGCACATGGATGGGTGCAGATC
ATAAAGGGGATTACACGTAACAATTTTGTGAAGTTTATTTTTGCCAGTTC
ATCCAGGGACTCCCTAAATGTATCTGTCTGTCGGTCTGCCTGTGTGTCGC
CAATTGGGAAAACCGAAACGAATTTAGTGTCACTTCCGTTTCCGTTTCGC
AAACTATCGAGTCAGACAGGCGAGAGGGTTGCGGTGTGGCGTGGCGTGGC
CACAGGACATGCTCTTTACATGCCATGCACGTTTCATCCTTTATTGCCGC
TCGGCATTAGAACAGGGATTTCGTCGGATTAAAGCAAATAAAGGGCGTGC
TTTCTGTTTGCACCCAACTGGCAACTGCCGATGATGCCACAAGTTTAAAT
CGGAGCAGCCAGCATTGTTACGGGTATATCGAACTGAGCCCCCCAGGGAT
ATATAAGTCATTTCAATGGGTATGCCACAGTTGAGTCTGGTATAGGACCA
ACATTTGCCACTTGGATTTTGTTTAAATAGACATTTTCAGCTTAAGCCTT
GTGGGCAAATGTGTGCGAAGCATATTCTGGGAACCTGTCCCGGGCAGACA
CTGGTCCAGAACTTTGTGGCTTTTTTGACTCCATTCCGCTCTTGTATCGC
AATGACGAGAGCAAATGGGCTTTGAAACTGGTAAAAAGTAACGAACGTAA
AACAAATAACGATGAGGCGAAAAGTGAAGAGAAAGTGAGAAAAAGAAGTC
GCAATATCATCCGCAAAATCATTAATCAAATTATGAGCTCAAGCATCTAA
TAGCATTTGCATTTTTTAATAGCCACTCGTCGTAATAACAAGCCCATGAC
AAGCATATCAAACATAAGCTCAACAAGCCAACAGCCAACAAAAGTACTTA
AAACAATCAAACATTGCAGCAACTTAAATGTAAATGCAAAAGTAAACAAA
CTCGC

RT09047.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13300.c 2355 CG13300.c 1..2355 1..2355 11760 99.9 Plus
CG13300.b 2141 CG13300.b 1..2141 1..2141 10690 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6322492..6324111 2355..739 7960 99.6 Minus
chr3L 24539361 chr3L 6324954..6325562 610..1 2925 99 Minus
chr3L 24539361 chr3L 6324539..6324669 739..609 655 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6330025..6331641 2355..739 8085 100 Minus
3L 28110227 3L 6332470..6333079 610..1 3035 99.8 Minus
3L 28110227 3L 6332064..6332194 739..609 655 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6323125..6324741 2355..739 8085 100 Minus
3L 28103327 3L 6325570..6326179 610..1 3035 99.8 Minus
3L 28103327 3L 6325164..6325294 739..609 655 100 Minus
Blast to na_te.dros performed 2019-03-15 20:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2286..2535 827..1072 204 56.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6739..7035 843..1142 174 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2396..2711 845..1157 166 55.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6781..7197 843..1237 165 54.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2641 831..1145 155 54.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6939 845..1073 152 55.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6760..6830 843..909 146 73.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2433..2854 838..1240 144 54.9 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3264..3345 831..906 144 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6821..6915 831..928 139 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2622..2859 844..1080 134 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2789..2868 843..915 132 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2478..2546 834..905 118 66.7 Plus
Tabor 7345 Tabor TABOR 7345bp 5362..5448 2060..2148 116 60.7 Plus

RT09047.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:49:05 Download gff for RT09047.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6322492..6324110 740..2355 99 <- Minus
chr3L 6324539..6324667 611..739 100 <- Minus
chr3L 6324954..6325562 1..610 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-15 10:18:40 Download gff for RT09047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13300-RA 1..1167 184..1350 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:01:13 Download gff for RT09047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13300-RA 1..1167 184..1350 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:23:41 Download gff for RT09047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13300-RA 1..1167 184..1350 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:07 Download gff for RT09047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13300-RA 1..1167 184..1350 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:18:40 Download gff for RT09047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13300-RA 1..1167 184..1350 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:01:13 Download gff for RT09047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13300-RA 1248..2881 1..1634 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:23:41 Download gff for RT09047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13300-RA 1248..3602 1..2355 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:07 Download gff for RT09047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13300-RA 1248..3602 1..2355 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:49:05 Download gff for RT09047.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6330025..6331640 740..2355 100 <- Minus
3L 6332064..6332192 611..739 100 <- Minus
3L 6332470..6333079 1..610 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:49:05 Download gff for RT09047.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6330025..6331640 740..2355 100 <- Minus
3L 6332064..6332192 611..739 100 <- Minus
3L 6332470..6333079 1..610 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:49:05 Download gff for RT09047.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6330025..6331640 740..2355 100 <- Minus
3L 6332064..6332192 611..739 100 <- Minus
3L 6332470..6333079 1..610 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:23:41 Download gff for RT09047.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6323125..6324740 740..2355 100 <- Minus
arm_3L 6325164..6325292 611..739 100 <- Minus
arm_3L 6325570..6326179 1..610 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:36:15 Download gff for RT09047.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6325164..6325292 611..739 100 <- Minus
3L 6323125..6324740 740..2355 100 <- Minus
3L 6325570..6326179 1..610 99   Minus

RT09047.pep Sequence

Translation from 183 to 1349

> RT09047.pep
MPSVANSNYSNDARLGYVVNQVASVSVSISASASALPSVSASEFPTFSPP
RIASLVASSSAEDLSSFGDVTFDIFDDDDDLFGSPMAFDASEQGLWNGRF
VPPPPRPPFFVDEPVLSDGLTTCDLCSWAMPTKSTFMFEGTIEKATELGW
PLTLIIVSVLSALLGAIIMIAVVRCRRKKSSNNRNDTHVQWWSRNKRAHG
NGLNGAGGASGAAGGAGGNVHHHNGSSSNINNNHLRRSNIYTAHPADSIR
GLQPLPVVLPLPLSLPHPPSGGASPASSSTTPPATQQQQHQPLQQQQYFH
PYQQQQHVHHSHTHHHHTHHHVPLYPHDCDEDAAYEEPEYHQPQQLHSVN
SSSSLSSMGSSSLPQEASNSRATHWPPGATSATMVIAS*

RT09047.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10901-PA 398 GF10901-PA 15..398 12..388 961 75.5 Plus
Dana\GF23536-PA 389 GF23536-PA 49..184 70..200 359 55.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14060-PA 396 GG14060-PA 1..396 1..388 1975 96 Plus
Dere\GG15344-PA 386 GG15344-PA 52..162 70..200 195 37.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16276-PA 397 GH16276-PA 36..397 11..388 840 65.9 Plus
Dgri\GH15159-PA 372 GH15159-PA 82..142 80..142 174 60.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13300-PA 388 CG13300-PA 1..388 1..388 2073 100 Plus
CG42747-PC 404 CG42747-PC 33..320 53..370 420 33.8 Plus
sd-PQ 625 CG8544-PQ 139..284 201..342 185 34.6 Plus
na-PG 2224 CG1517-PG 14..176 193..361 163 31.4 Plus
na-PF 2233 CG1517-PF 14..176 193..361 163 31.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13217-PA 388 GI13217-PA 1..388 1..388 902 64 Plus
Dmoj\GI12098-PA 369 GI12098-PA 83..143 80..142 174 60.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22518-PA 500 GL22518-PA 1..269 1..250 761 77 Plus
Dper\GL20425-PA 184 GL20425-PA 102..184 322..388 151 53.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12184-PA 475 GA12184-PA 1..269 1..250 776 77.1 Plus
Dpse\GA24741-PA 422 GA24741-PA 96..204 80..200 208 46.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13842-PA 384 GM13842-PA 1..384 1..388 1980 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13127-PA 387 GD13127-PA 1..387 1..388 2007 98.7 Plus
Dsim\GD13956-PA 131 GD13956-PA 68..128 80..142 172 65.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11992-PA 376 GJ11992-PA 31..250 11..251 754 80.1 Plus
Dvir\GJ13372-PA 365 GJ13372-PA 13..141 19..142 179 40.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17338-PA 498 GK17338-PA 1..290 1..253 658 69.8 Plus
Dwil\GK16848-PA 397 GK16848-PA 101..160 80..141 168 59.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20484-PA 402 GE20484-PA 1..402 1..388 1104 92.3 Plus
Dyak\GE21562-PA 184 GE21562-PA 71..131 80..142 172 65.1 Plus

RT09047.hyp Sequence

Translation from 183 to 1349

> RT09047.hyp
MPSVANSNYSNDARLGYVVNQVASVSVSISASASALPSVSASEFPTFSPP
RIASLVASSSAEDLSSFGDVTFDIFDDDDDLFGSPMAFDASEQGLWNGRF
VPPPPRPPFFVDEPVLSDGLTTCDLCSWAMPTKSTFMFEGTIEKATELGW
PLTLIIVSVLSALLGAIIMIAVVRCRRKKSSNNRNDTHVQWWSRNKRAHG
NGLNGAGGASGAAGGAGGNVHHHNGSSSNINNNHLRRSNIYTAHPADSIR
GLQPLPVVLPLPLSLPHPPSGGASPASSSTTPPATQQQQHQPLQQQQYFH
PYQQQQHVHHSHTHHHHTHHHVPLYPHDCDEDAAYEEPEYHQPQQLHSVN
SSSSLSSMGSSSLPQEASNSRATHWPPGATSATMVIAS*

RT09047.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13300-PA 388 CG13300-PA 1..388 1..388 2073 100 Plus
CG42747-PC 404 CG42747-PC 33..320 53..370 420 33.8 Plus
sd-PQ 625 CG8544-PQ 139..284 201..342 185 34.6 Plus
na-PG 2224 CG1517-PG 14..176 193..361 163 31.4 Plus
na-PF 2233 CG1517-PF 14..176 193..361 163 31.4 Plus