Clone Sequence Records
RT09204.complete Sequence
694 bp assembled on 2010-06-16
GenBank Submission: BT125024.1
> RT09204.complete
AACTGCAGCAACACAATTGGTTAAGCCGCCACAGAAGCAGCCGGAAAATT
ACCTACAGCAAGATGAAAGGACTGCTACTCATTACAATCGCCTGCTTGAC
GACCTCCATCCTGGCAGCTCCTGCTCCTGAACCCGCTCCAGAACCATCTC
CGTCTCCAGCTCCTGCTCCATCTCCATCACCCAGCATTGGAATCGGAATT
GGTCATGGCTACGGTGGATATGGCCTGGGATTGGGTCTAGGAATCGGGCA
CTACGGAGGACTCTACGGGCACGGCTATGGCGGGCACTATGGAGGTCTTG
GTCTGGGATTGGGCTACCATGCACCCATCATCTCCAAGACGATCATCGGC
AAAAGCTACTTGGGCGGCTATGGCTATGGCCTCGGTCACGGATATCTCGG
AGGCTACGGCCATGGACTGTACGGAGGACACGGTCTGGGTCTGGGTCTGG
GTCTGGGATACGGACTGGGATATGGCTATGGCCACGGTTGGTAGAGGTAC
TCCCAAGTCAAGTAAAGTTAAGCCAAATGGAGCCGGGACGAGCGTGTGAG
AGTTTTCAATCAAGTCATATACTTCGCAGTACCCAAATCTTATTCAGTCA
GTCACTCAGCAAGTCAATAAATCAATAAAGACAAAGCAAAAAATGTACAA
AAAACTAGAATCATGGTCAACCGTTTATTAAAACTGGATCTTTT
RT09204.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13050.a | 694 | CG13050.a | 1..694 | 1..694 | 3470 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 16268166..16268788 | 694..72 | 3070 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 16268910..16268980 | 71..1 | 325 | 97.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16278458..16279080 | 694..72 | 3115 | 100 | Minus |
3L | 28110227 | 3L | 16279201..16279271 | 71..1 | 355 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 16271558..16272180 | 694..72 | 3115 | 100 | Minus |
3L | 28103327 | 3L | 16272301..16272371 | 71..1 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 10:51:40 has no hits.
RT09204.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:52:18 Download gff for
RT09204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 16268166..16268788 | 72..694 | 95 | <- | Minus |
chr3L | 16268910..16268980 | 1..71 | 97 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2011-03-16 13:21:26 Download gff for
RT09204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13050-RA | 1..432 | 63..494 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:36:44 Download gff for
RT09204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13050-RA | 1..432 | 63..494 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:05:44 Download gff for
RT09204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13050-RA | 1..432 | 63..494 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:50 Download gff for
RT09204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13050-RA | 1..432 | 63..494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-16 13:51:23 Download gff for
RT09204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13050-RA | 1..432 | 63..494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:36:43 Download gff for
RT09204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13050-RA | 1..432 | 63..494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:05:44 Download gff for
RT09204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13050-RA | 1..694 | 1..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:50 Download gff for
RT09204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13050-RA | 1..694 | 1..694 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:52:18 Download gff for
RT09204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16278458..16279080 | 72..694 | 100 | <- | Minus |
3L | 16279201..16279271 | 1..71 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:52:18 Download gff for
RT09204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16278458..16279080 | 72..694 | 100 | <- | Minus |
3L | 16279201..16279271 | 1..71 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:52:18 Download gff for
RT09204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16278458..16279080 | 72..694 | 100 | <- | Minus |
3L | 16279201..16279271 | 1..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:05:44 Download gff for
RT09204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16271558..16272180 | 72..694 | 100 | <- | Minus |
arm_3L | 16272301..16272371 | 1..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:39:28 Download gff for
RT09204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16271558..16272180 | 72..694 | 100 | <- | Minus |
3L | 16272301..16272371 | 1..71 | 100 | | Minus |
RT09204.hyp Sequence
Translation from 2 to 493
> RT09204.hyp
LQQHNWLSRHRSSRKITYSKMKGLLLITIACLTTSILAAPAPEPAPEPSP
SPAPAPSPSPSIGIGIGHGYGGYGLGLGLGIGHYGGLYGHGYGGHYGGLG
LGLGYHAPIISKTIIGKSYLGGYGYGLGHGYLGGYGHGLYGGHGLGLGLG
LGYGLGYGYGHGW*
RT09204.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13050-PA | 143 | CG13050-PA | 1..143 | 21..163 | 806 | 100 | Plus |
CG2157-PA | 245 | CG2157-PA | 70..166 | 63..160 | 190 | 48.5 | Plus |
CG2157-PB | 247 | CG2157-PB | 70..168 | 63..160 | 186 | 47.6 | Plus |
CG5070-PA | 209 | CG5070-PA | 47..195 | 63..163 | 181 | 37.7 | Plus |
CG14191-PA | 193 | CG14191-PA | 30..139 | 61..162 | 177 | 50 | Plus |
RT09204.pep Sequence
Translation from 2 to 493
> RT09204.pep
LQQHNWLSRHRSSRKITYSKMKGLLLITIACLTTSILAAPAPEPAPEPSP
SPAPAPSPSPSIGIGIGHGYGGYGLGLGLGIGHYGGLYGHGYGGHYGGLG
LGLGYHAPIISKTIIGKSYLGGYGYGLGHGYLGGYGHGLYGGHGLGLGLG
LGYGLGYGYGHGW*
RT09204.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13050-PA | 143 | CG13050-PA | 1..143 | 21..163 | 806 | 100 | Plus |
CG2157-PA | 245 | CG2157-PA | 70..166 | 63..160 | 190 | 48.5 | Plus |
CG2157-PB | 247 | CG2157-PB | 70..168 | 63..160 | 186 | 47.6 | Plus |
CG5070-PA | 209 | CG5070-PA | 47..195 | 63..163 | 181 | 37.7 | Plus |
CG14191-PA | 193 | CG14191-PA | 30..139 | 61..162 | 177 | 50 | Plus |
CG15597-PB | 149 | CG15597-PB | 28..126 | 76..163 | 173 | 47.5 | Plus |
CG17777-PC | 110 | CG17777-PC | 1..103 | 21..143 | 160 | 38.1 | Plus |
CG17777-PB | 110 | CG17777-PB | 1..103 | 21..143 | 160 | 38.1 | Plus |
CG17108-PA | 342 | CG17108-PA | 198..299 | 57..160 | 157 | 43.4 | Plus |
CG17108-PA | 342 | CG17108-PA | 238..323 | 63..162 | 150 | 42.3 | Plus |
CG9269-PA | 146 | CG9269-PA | 48..123 | 69..163 | 150 | 51 | Plus |
CG17108-PA | 342 | CG17108-PA | 145..244 | 63..162 | 147 | 43.6 | Plus |
CG14327-PB | 153 | CG14327-PB | 51..132 | 62..161 | 147 | 42 | Plus |
CG14327-PA | 153 | CG14327-PA | 51..132 | 62..161 | 147 | 42 | Plus |
CG14327-PB | 153 | CG14327-PB | 51..125 | 77..162 | 144 | 48.3 | Plus |
CG14327-PA | 153 | CG14327-PA | 51..125 | 77..162 | 144 | 48.3 | Plus |
CG14191-PA | 193 | CG14191-PA | 96..180 | 63..146 | 143 | 47.1 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:28:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM24427-PA | 141 | GM24427-PA | 1..141 | 21..163 | 601 | 97.9 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:28:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD12497-PA | 141 | GD12497-PA | 1..141 | 21..163 | 601 | 97.9 | Plus |