Clone RT09204 Report

Search the DGRC for RT09204

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:92
Well:4
Vector:pCR2.1
Associated Gene/TranscriptCG13050-RA
Protein status:RT09204.pep: gold
Sequenced Size:694

Clone Sequence Records

RT09204.complete Sequence

694 bp assembled on 2010-06-16

GenBank Submission: BT125024.1

> RT09204.complete
AACTGCAGCAACACAATTGGTTAAGCCGCCACAGAAGCAGCCGGAAAATT
ACCTACAGCAAGATGAAAGGACTGCTACTCATTACAATCGCCTGCTTGAC
GACCTCCATCCTGGCAGCTCCTGCTCCTGAACCCGCTCCAGAACCATCTC
CGTCTCCAGCTCCTGCTCCATCTCCATCACCCAGCATTGGAATCGGAATT
GGTCATGGCTACGGTGGATATGGCCTGGGATTGGGTCTAGGAATCGGGCA
CTACGGAGGACTCTACGGGCACGGCTATGGCGGGCACTATGGAGGTCTTG
GTCTGGGATTGGGCTACCATGCACCCATCATCTCCAAGACGATCATCGGC
AAAAGCTACTTGGGCGGCTATGGCTATGGCCTCGGTCACGGATATCTCGG
AGGCTACGGCCATGGACTGTACGGAGGACACGGTCTGGGTCTGGGTCTGG
GTCTGGGATACGGACTGGGATATGGCTATGGCCACGGTTGGTAGAGGTAC
TCCCAAGTCAAGTAAAGTTAAGCCAAATGGAGCCGGGACGAGCGTGTGAG
AGTTTTCAATCAAGTCATATACTTCGCAGTACCCAAATCTTATTCAGTCA
GTCACTCAGCAAGTCAATAAATCAATAAAGACAAAGCAAAAAATGTACAA
AAAACTAGAATCATGGTCAACCGTTTATTAAAACTGGATCTTTT

RT09204.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13050.a 694 CG13050.a 1..694 1..694 3470 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16268166..16268788 694..72 3070 99.5 Minus
chr3L 24539361 chr3L 16268910..16268980 71..1 325 97.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16278458..16279080 694..72 3115 100 Minus
3L 28110227 3L 16279201..16279271 71..1 355 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16271558..16272180 694..72 3115 100 Minus
3L 28103327 3L 16272301..16272371 71..1 355 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:51:40 has no hits.

RT09204.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:52:18 Download gff for RT09204.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16268166..16268788 72..694 95 <- Minus
chr3L 16268910..16268980 1..71 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2011-03-16 13:21:26 Download gff for RT09204.complete
Subject Subject Range Query Range Percent Splice Strand
CG13050-RA 1..432 63..494 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:36:44 Download gff for RT09204.complete
Subject Subject Range Query Range Percent Splice Strand
CG13050-RA 1..432 63..494 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:05:44 Download gff for RT09204.complete
Subject Subject Range Query Range Percent Splice Strand
CG13050-RA 1..432 63..494 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:50 Download gff for RT09204.complete
Subject Subject Range Query Range Percent Splice Strand
CG13050-RA 1..432 63..494 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-16 13:51:23 Download gff for RT09204.complete
Subject Subject Range Query Range Percent Splice Strand
CG13050-RA 1..432 63..494 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:36:43 Download gff for RT09204.complete
Subject Subject Range Query Range Percent Splice Strand
CG13050-RA 1..432 63..494 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:05:44 Download gff for RT09204.complete
Subject Subject Range Query Range Percent Splice Strand
CG13050-RA 1..694 1..694 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:50 Download gff for RT09204.complete
Subject Subject Range Query Range Percent Splice Strand
CG13050-RA 1..694 1..694 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:52:18 Download gff for RT09204.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16278458..16279080 72..694 100 <- Minus
3L 16279201..16279271 1..71 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:52:18 Download gff for RT09204.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16278458..16279080 72..694 100 <- Minus
3L 16279201..16279271 1..71 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:52:18 Download gff for RT09204.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16278458..16279080 72..694 100 <- Minus
3L 16279201..16279271 1..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:05:44 Download gff for RT09204.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16271558..16272180 72..694 100 <- Minus
arm_3L 16272301..16272371 1..71 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:39:28 Download gff for RT09204.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16271558..16272180 72..694 100 <- Minus
3L 16272301..16272371 1..71 100   Minus

RT09204.hyp Sequence

Translation from 2 to 493

> RT09204.hyp
LQQHNWLSRHRSSRKITYSKMKGLLLITIACLTTSILAAPAPEPAPEPSP
SPAPAPSPSPSIGIGIGHGYGGYGLGLGLGIGHYGGLYGHGYGGHYGGLG
LGLGYHAPIISKTIIGKSYLGGYGYGLGHGYLGGYGHGLYGGHGLGLGLG
LGYGLGYGYGHGW*

RT09204.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13050-PA 143 CG13050-PA 1..143 21..163 806 100 Plus
CG2157-PA 245 CG2157-PA 70..166 63..160 190 48.5 Plus
CG2157-PB 247 CG2157-PB 70..168 63..160 186 47.6 Plus
CG5070-PA 209 CG5070-PA 47..195 63..163 181 37.7 Plus
CG14191-PA 193 CG14191-PA 30..139 61..162 177 50 Plus

RT09204.pep Sequence

Translation from 2 to 493

> RT09204.pep
LQQHNWLSRHRSSRKITYSKMKGLLLITIACLTTSILAAPAPEPAPEPSP
SPAPAPSPSPSIGIGIGHGYGGYGLGLGLGIGHYGGLYGHGYGGHYGGLG
LGLGYHAPIISKTIIGKSYLGGYGYGLGHGYLGGYGHGLYGGHGLGLGLG
LGYGLGYGYGHGW*

RT09204.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13050-PA 143 CG13050-PA 1..143 21..163 806 100 Plus
CG2157-PA 245 CG2157-PA 70..166 63..160 190 48.5 Plus
CG2157-PB 247 CG2157-PB 70..168 63..160 186 47.6 Plus
CG5070-PA 209 CG5070-PA 47..195 63..163 181 37.7 Plus
CG14191-PA 193 CG14191-PA 30..139 61..162 177 50 Plus
CG15597-PB 149 CG15597-PB 28..126 76..163 173 47.5 Plus
CG17777-PC 110 CG17777-PC 1..103 21..143 160 38.1 Plus
CG17777-PB 110 CG17777-PB 1..103 21..143 160 38.1 Plus
CG17108-PA 342 CG17108-PA 198..299 57..160 157 43.4 Plus
CG17108-PA 342 CG17108-PA 238..323 63..162 150 42.3 Plus
CG9269-PA 146 CG9269-PA 48..123 69..163 150 51 Plus
CG17108-PA 342 CG17108-PA 145..244 63..162 147 43.6 Plus
CG14327-PB 153 CG14327-PB 51..132 62..161 147 42 Plus
CG14327-PA 153 CG14327-PA 51..132 62..161 147 42 Plus
CG14327-PB 153 CG14327-PB 51..125 77..162 144 48.3 Plus
CG14327-PA 153 CG14327-PA 51..125 77..162 144 48.3 Plus
CG14191-PA 193 CG14191-PA 96..180 63..146 143 47.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24427-PA 141 GM24427-PA 1..141 21..163 601 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12497-PA 141 GD12497-PA 1..141 21..163 601 97.9 Plus