Clone RT09244 Report

Search the DGRC for RT09244

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:92
Well:44
Vector:pCR2.1
Associated Gene/TranscriptCG13775-RA
Protein status:RT09244.pep: gold
Sequenced Size:1945

Clone Sequence Records

RT09244.complete Sequence

1945 bp assembled on 2010-07-15

GenBank Submission: BT125060.1

> RT09244.complete
GCCGCAGAACGGATGTAGAGGCGGATGTGGACATCCGCAAAAAATGTACA
ATTTGAGAATTACCAAAGAATTGCAGCGATGAGCAAGAAGAAAAGCAATG
TGTGGCAGTACTTCTACAAGACATCCGGCACAGTGGCCACCTGTCTGCTG
TGCAACAGGAACTACTCGAGGCGAGGACGCGGCACAACATGTCTGCGGAA
TCATCTGAAGAGCAAGCACCCACCGGAGTTCCTATCTCTATCCGGGGACA
TAAAGTACCTGGACCTGGTTAAGAGCGAGATCTCCATCGGTTCGCCACAG
CACCCCACAGCCCAGCTAGAATTGAATCTGCACGAAACAGATTCAGATCC
ATTGGACACCGAGGATATATCCTACAGCAAACGCTGTGATGAGAAGTTGG
CCCTCATGCTACTAAATCACTCCTTTGAGTTCATTGAAGGACCAGGATTC
GTAAATTTCATTAGGACGCTGCAGCCGCGGTACACGATTCAACCAAGGAG
CTACTATGAGAAGATACTGTGCGAGGATATACAAAGGAAAATGCATCAGC
ATTTGAAGCAACAGGTGGATCTGCTGGATGCCATATCGTTGTCTACGAGT
CTCTGGCGTGGTGACAAAGGCGAAGGACTGCTGAGCTTGTCCTGCTCCGG
AATATCAAGGGATTTTCAGACTCACCGCCTAATGCTGAAATGCGAGGCTC
TGAATTACGAAAGCACTTCGAAGCTAGCTTGTTGCATTCGAGATCTTGTG
CCCAGCTTGGCCATTGAGGTGCCCAAAGAGAAGATACACTGCGTAATCAG
GGACGAGATGACGGCGCTGCCAGGTTCCCTGCCCGATTGCAGTGTGCACC
GCCTGCAGATGTGCGTTCGATTTGCTTTGCAATCGAACGAATTACTGCAG
AACCTTTCATCCAAGTGCAAGCAAATAGTTGACCATTTTGCGTCGTCTAA
GATGGCCAACGATCATCTGAAATTCATTCAAGAGATCCGCTTGACGCGAG
ACCCGTGCACACTTACACCTTACGATCCCTGTCAATGGAATTCCGCTTTT
CAGATGATGAGCAGCGTGTTTCGAATGAAAGATGCTCTATCCTTGTACTG
CGAAGAGTATAGTCTGGTCCAAATATATCCAGATGAATGGATAGAGATCG
ATTTGTGCAGCAAAGTAATGCAGCCTTGTGAAGAAACAATCAAGATATGG
AGCAATCCATCTACGACCACCTCATCCGTAATCCCGCTGGTTGCCGCTTT
ACGGGATTCCCTCCGAACAGATGTCCATAACTTTGTCTCATCTGTGACTA
TATGCAGTTTCGCCAGAAAGTTGCTTGAAGAACTGGAAATGAAGTTCGCC
CACATCACTAGCGACATCAACTTTTTGATGGCCACATATTTGGATCCGAG
ATATAAGCAAGCATTTTTCACCGAACGTGAGGAGCAGTTGGTGGCCAATG
AAGTTCTGCTTCAGCTCGCTGGAGTGCCAGAGGATTGCAATGGTCAGCCA
CCGCTGAAAATAATCAAAGTGTCATCCACATCGTCCCAGAAGAATGAATC
AAAGATCGATAGCATTCTGGATAGCATACTGACAACTGGAACGACGAACA
CTCAACAGCCAAATACGTCAATGGGCTCCCAGTCTCAGATTAAGAATCTG
CTATATCTATACAACTCCGAACCCAGAATCGATAGGAACATGGATCCCCT
GATTTGGTGGAGGAGCAACATAAAATACATATCCTTGTATGGCATTGTTA
GGAAATTCTTATCAGCACCAGCAGCAAGTGTGGTTAGTGAAGGCTTATTT
AGAAAATCAACGCACTTGTATTTCGACATGCAGGCGGGCTTGAGCCCCGA
AAGTGCATCCAAAATGTTGCTCATGAAGGCCAACTTTAGCTTTAGCAATT
CGGAAATCAATTAGGATACAGTAATTTATATAATTTAAACGTATT

RT09244.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13775-RA 1947 CG13775-RA 1..1945 1..1945 9725 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6954341..6955303 1296..334 4815 100 Minus
chr2L 23010047 chr2L 6953638..6954287 1945..1296 3250 100 Minus
chr2L 23010047 chr2L 6955701..6956034 334..1 1670 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6955257..6956219 1296..334 4815 100 Minus
2L 23513712 2L 6954554..6955203 1945..1296 3250 100 Minus
2L 23513712 2L 6956617..6956950 334..1 1670 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6955257..6956219 1296..334 4815 100 Minus
2L 23513712 2L 6954554..6955203 1945..1296 3250 100 Minus
2L 23513712 2L 6956617..6956950 334..1 1670 100 Minus
Blast to na_te.dros performed on 2019-03-16 06:48:52 has no hits.

RT09244.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:49:40 Download gff for RT09244.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6953638..6954286 1297..1945 100 <- Minus
chr2L 6954341..6955303 334..1296 100 <- Minus
chr2L 6955702..6956034 1..333 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-15 10:44:55 Download gff for RT09244.complete
Subject Subject Range Query Range Percent Splice Strand
CG13775-RA 1..1836 79..1914 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:23:23 Download gff for RT09244.complete
Subject Subject Range Query Range Percent Splice Strand
CG13775-RA 1..1836 79..1914 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:52:18 Download gff for RT09244.complete
Subject Subject Range Query Range Percent Splice Strand
CG13775-RA 1..1836 79..1914 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:24:01 Download gff for RT09244.complete
Subject Subject Range Query Range Percent Splice Strand
CG13775-RA 1..1836 79..1914 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:44:55 Download gff for RT09244.complete
Subject Subject Range Query Range Percent Splice Strand
CG13775-RA 1..1836 79..1914 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:23:22 Download gff for RT09244.complete
Subject Subject Range Query Range Percent Splice Strand
CG13775-RA 1..1836 79..1914 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:18 Download gff for RT09244.complete
Subject Subject Range Query Range Percent Splice Strand
CG13775-RA 1..1945 1..1945 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:24:01 Download gff for RT09244.complete
Subject Subject Range Query Range Percent Splice Strand
CG13775-RA 1..1945 1..1945 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:49:40 Download gff for RT09244.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6954554..6955202 1297..1945 100 <- Minus
2L 6955257..6956219 334..1296 100 <- Minus
2L 6956618..6956950 1..333 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:49:40 Download gff for RT09244.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6954554..6955202 1297..1945 100 <- Minus
2L 6955257..6956219 334..1296 100 <- Minus
2L 6956618..6956950 1..333 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:49:40 Download gff for RT09244.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6954554..6955202 1297..1945 100 <- Minus
2L 6955257..6956219 334..1296 100 <- Minus
2L 6956618..6956950 1..333 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:18 Download gff for RT09244.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6954554..6955202 1297..1945 100 <- Minus
arm_2L 6955257..6956219 334..1296 100 <- Minus
arm_2L 6956618..6956950 1..333 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:55:15 Download gff for RT09244.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6954554..6955202 1297..1945 100 <- Minus
2L 6955257..6956219 334..1296 100 <- Minus
2L 6956618..6956950 1..333 100   Minus

RT09244.pep Sequence

Translation from 24 to 1913

> RT09244.pep
MWTSAKNVQFENYQRIAAMSKKKSNVWQYFYKTSGTVATCLLCNRNYSRR
GRGTTCLRNHLKSKHPPEFLSLSGDIKYLDLVKSEISIGSPQHPTAQLEL
NLHETDSDPLDTEDISYSKRCDEKLALMLLNHSFEFIEGPGFVNFIRTLQ
PRYTIQPRSYYEKILCEDIQRKMHQHLKQQVDLLDAISLSTSLWRGDKGE
GLLSLSCSGISRDFQTHRLMLKCEALNYESTSKLACCIRDLVPSLAIEVP
KEKIHCVIRDEMTALPGSLPDCSVHRLQMCVRFALQSNELLQNLSSKCKQ
IVDHFASSKMANDHLKFIQEIRLTRDPCTLTPYDPCQWNSAFQMMSSVFR
MKDALSLYCEEYSLVQIYPDEWIEIDLCSKVMQPCEETIKIWSNPSTTTS
SVIPLVAALRDSLRTDVHNFVSSVTICSFARKLLEELEMKFAHITSDINF
LMATYLDPRYKQAFFTEREEQLVANEVLLQLAGVPEDCNGQPPLKIIKVS
STSSQKNESKIDSILDSILTTGTTNTQQPNTSMGSQSQIKNLLYLYNSEP
RIDRNMDPLIWWRSNIKYISLYGIVRKFLSAPAASVVSEGLFRKSTHLYF
DMQAGLSPESASKMLLMKANFSFSNSEIN*

RT09244.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14464-PA 409 GF14464-PA 1..404 220..623 1633 73.3 Plus
Dana\GF14465-PA 122 GF14465-PA 3..117 22..130 382 65 Plus
Dana\GF22278-PA 258 GF22278-PA 13..239 134..357 197 24.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23564-PA 611 GG23564-PA 1..611 19..629 3100 94.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11357-PA 602 GH11357-PA 3..594 22..621 1545 51.5 Plus
Dgri\GH23400-PA 405 GH23400-PA 3..403 22..425 1045 51.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13775-PB 611 CG13775-PB 1..611 19..629 3185 100 Plus
CG13775-PA 611 CG13775-PA 1..611 19..629 3185 100 Plus
CG13775-PC 502 CG13775-PC 1..502 128..629 2604 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17735-PA 610 GI17735-PA 3..604 22..621 1734 56.7 Plus
Dmoj\GI16010-PA 485 GI16010-PA 50..386 134..465 212 25.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25597-PA 606 GL25597-PA 3..606 22..628 2165 66.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12516-PA 606 GA12516-PA 3..606 22..628 2162 66.5 Plus
Dpse\GA25633-PA 534 GA25633-PA 33..505 116..592 230 23.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13709-PA 611 GM13709-PA 1..611 19..629 3185 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22525-PA 611 GD22525-PA 1..611 19..629 3214 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17561-PA 606 GJ17561-PA 3..600 22..621 1728 56.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24779-PA 612 GK24779-PA 1..612 19..629 1577 52.3 Plus
Dwil\GK16089-PA 467 GK16089-PA 6..348 131..469 176 20.7 Plus
Dwil\GK24889-PA 312 GK24889-PA 55..237 24..226 164 25 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18388-PA 611 GE18388-PA 1..611 19..629 3138 95.3 Plus

RT09244.hyp Sequence

Translation from 24 to 1913

> RT09244.hyp
MWTSAKNVQFENYQRIAAMSKKKSNVWQYFYKTSGTVATCLLCNRNYSRR
GRGTTCLRNHLKSKHPPEFLSLSGDIKYLDLVKSEISIGSPQHPTAQLEL
NLHETDSDPLDTEDISYSKRCDEKLALMLLNHSFEFIEGPGFVNFIRTLQ
PRYTIQPRSYYEKILCEDIQRKMHQHLKQQVDLLDAISLSTSLWRGDKGE
GLLSLSCSGISRDFQTHRLMLKCEALNYESTSKLACCIRDLVPSLAIEVP
KEKIHCVIRDEMTALPGSLPDCSVHRLQMCVRFALQSNELLQNLSSKCKQ
IVDHFASSKMANDHLKFIQEIRLTRDPCTLTPYDPCQWNSAFQMMSSVFR
MKDALSLYCEEYSLVQIYPDEWIEIDLCSKVMQPCEETIKIWSNPSTTTS
SVIPLVAALRDSLRTDVHNFVSSVTICSFARKLLEELEMKFAHITSDINF
LMATYLDPRYKQAFFTEREEQLVANEVLLQLAGVPEDCNGQPPLKIIKVS
STSSQKNESKIDSILDSILTTGTTNTQQPNTSMGSQSQIKNLLYLYNSEP
RIDRNMDPLIWWRSNIKYISLYGIVRKFLSAPAASVVSEGLFRKSTHLYF
DMQAGLSPESASKMLLMKANFSFSNSEIN*

RT09244.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13775-PB 611 CG13775-PB 1..611 19..629 3185 100 Plus
CG13775-PA 611 CG13775-PA 1..611 19..629 3185 100 Plus
CG13775-PC 502 CG13775-PC 1..502 128..629 2604 100 Plus