Clone RT10665 Report

Search the DGRC for RT10665

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:106
Well:65
Vector:pCR2.1
Associated Gene/Transcripthng1-RA
Protein status:RT10665.pep: gold
Sequenced Size:1050

Clone Sequence Records

RT10665.complete Sequence

1050 bp assembled on 2011-02-04

GenBank Submission: BT126097.1

> RT10665.complete
CACTGGTCAATATTAAACATATATTAAACAAATTAAAATGAGCTCAAACC
ACCGTCCTCTGGACGATTCGGATATCCTCCTAATACAAACCATCCGCGAG
ACGCCGTCGCTGTACGATCCCCAGCTGCCCTCCTTTCGGCTGTCGCAGCG
CAAAGAGGAGGACTGGGCAAAAGTGGCGGATTTGCTAAACATCTCCATCT
CAGACGCTCGGCGACGGTGGACGTGTCTGCGGGATCGCTATTCGCGGGAG
CTTAAGCAGAAGCGCCTGCATCCGTCCGGCGAGTTTGGTCACAATGACTT
CTTTCGGAAGATGGACTTCCTGCGGGACTTTGTGCGCAAGAGACGCGAGC
GCAGAGGACGCGAACGGGATCGGGAACAAAAGCCAACCGGGTGGATGAAG
GTTGATTTACAGCGACGGCGTCGTACCCGCCTGCCTATTGACACAGAGAC
CTTGATCGAGGAGCAAGGTTCGCACGCCTACGATGAGGGCGAGGAGCAGC
ACGACTACGACGCTAAGCTGGAGTCTCATACCACACAATCGGAGACGTAT
TCGGTGGTCGTGGAGGCGGACGATGGGCAGGAGCCCGAACAGGAGAGCTT
CGATGAGTTCCTGGGGGATGCGGAGTGCGAGCAAAAGGTCAAGGTGGTCA
CAATTCATCCGGAAATCGCTGCTCCGAATGCGACGTCCGCACCTGAGCCT
ATTGAGTCTAACCACGCGGATCTGAACTACTTGGTCTGTATGCCGCCCAA
TGCGAATCAGGAGCGAGAGCATTCCGCCCCAGAATTACCCAATCCCACGG
CCGTCATCACCCAAAAGACTTGCGAAACAGAGGACGACTTCTTTTGCAAG
TCGATTGCCGCGTATTTGCGCCAACTGTCGCGCGTGCACAAGATCAAGGC
CAAGGTGGAGATGTACCAGATTCTAGAGAAGTACATACTGCTCGAGGAGT
GCGGAAAGGGGTCGGGTGCGGGCGGATCAGGCTAAGCAGGTTGCATGCAA
TATGTACATAGGTTTTAACATAGTTTTTTAATGCAGTACAAATATACAAG

RT10665.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17055419..17056467 1..1049 5185 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21168960..21170008 1..1049 5230 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21170159..21171207 1..1049 5230 99.9 Plus
Blast to na_te.dros performed on 2019-03-17 01:37:16 has no hits.

RT10665.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:38:24 Download gff for RT10665.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17055419..17056467 1..1050 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-02-04 11:20:38 Download gff for RT10665.complete
Subject Subject Range Query Range Percent Splice Strand
CG9437-RA 1..948 38..985 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:45:16 Download gff for RT10665.complete
Subject Subject Range Query Range Percent Splice Strand
CG9437-RA 1..948 38..985 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:04:05 Download gff for RT10665.complete
Subject Subject Range Query Range Percent Splice Strand
hng1-RA 1..948 38..985 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-04 11:20:38 Download gff for RT10665.complete
Subject Subject Range Query Range Percent Splice Strand
CG9437-RA 1..1049 1..1050 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:45:16 Download gff for RT10665.complete
Subject Subject Range Query Range Percent Splice Strand
CG9437-RA 31..1079 1..1050 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:04:05 Download gff for RT10665.complete
Subject Subject Range Query Range Percent Splice Strand
hng1-RA 31..1079 1..1050 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:38:24 Download gff for RT10665.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21168960..21170008 1..1050 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:38:24 Download gff for RT10665.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21168960..21170008 1..1050 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:38:24 Download gff for RT10665.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21168960..21170008 1..1050 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:45:16 Download gff for RT10665.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17056465..17057513 1..1050 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:57:07 Download gff for RT10665.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21170159..21171207 1..1050 99   Plus

RT10665.pep Sequence

Translation from 37 to 984

> RT10665.pep
MSSNHRPLDDSDILLIQTIRETPSLYDPQLPSFRLSQRKEEDWAKVADLL
NISISDARRRWTCLRDRYSRELKQKRLHPSGEFGHNDFFRKMDFLRDFVR
KRRERRGRERDREQKPTGWMKVDLQRRRRTRLPIDTETLIEEQGSHAYDE
GEEQHDYDAKLESHTTQSETYSVVVEADDGQEPEQESFDEFLGDAECEQK
VKVVTIHPEIAAPNATSAPEPIESNHADLNYLVCMPPNANQEREHSAPEL
PNPTAVITQKTCETEDDFFCKSIAAYLRQLSRVHKIKAKVEMYQILEKYI
LLEECGKGSGAGGSG*

RT10665.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11939-PA 310 GF11939-PA 1..310 1..310 997 69.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22095-PA 315 GG22095-PA 1..304 1..304 1387 89.5 Plus
Dere\GG13380-PA 678 GG13380-PA 39..130 12..105 152 29.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20726-PA 334 GH20726-PA 1..333 1..309 765 50.7 Plus
Dgri\GH14617-PA 770 GH14617-PA 99..197 12..110 152 28 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
hng1-PA 315 CG9437-PA 1..315 1..315 1662 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20810-PA 335 GI20810-PA 1..328 1..309 773 54.2 Plus
Dmoj\GI13504-PA 728 GI13504-PA 90..188 12..110 162 29 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10159-PA 304 GL10159-PA 1..304 1..315 988 65.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21787-PA 304 GA21787-PA 1..304 1..315 988 65.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15812-PA 313 GM15812-PA 1..302 1..304 1475 95.4 Plus
Dsec\GM16842-PA 683 GM16842-PA 35..128 12..108 151 32 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11570-PA 313 GD11570-PA 1..313 1..315 1612 95.9 Plus
Dsim\GD12257-PA 682 GD12257-PA 35..128 12..108 151 32 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20543-PA 330 GJ20543-PA 1..330 1..315 834 56.1 Plus
Dvir\GJ11865-PA 706 GJ11865-PA 47..147 12..111 149 26.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19657-PA 334 GK19657-PA 1..328 1..310 758 51.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12175-PA 315 GE12175-PA 1..304 1..304 1421 92.1 Plus
Dyak\GE22475-PA 745 GE22475-PA 39..147 12..122 154 27 Plus

RT10665.hyp Sequence

Translation from 37 to 984

> RT10665.hyp
MSSNHRPLDDSDILLIQTIRETPSLYDPQLPSFRLSQRKEEDWAKVADLL
NISISDARRRWTCLRDRYSRELKQKRLHPSGEFGHNDFFRKMDFLRDFVR
KRRERRGRERDREQKPTGWMKVDLQRRRRTRLPIDTETLIEEQGSHAYDE
GEEQHDYDAKLESHTTQSETYSVVVEADDGQEPEQESFDEFLGDAECEQK
VKVVTIHPEIAAPNATSAPEPIESNHADLNYLVCMPPNANQEREHSAPEL
PNPTAVITQKTCETEDDFFCKSIAAYLRQLSRVHKIKAKVEMYQILEKYI
LLEECGKGSGAGGSG*

RT10665.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
hng1-PA 315 CG9437-PA 1..315 1..315 1662 100 Plus