Clone RT11029 Report

Search the DGRC for RT11029

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:110
Well:29
Vector:pCR2.1
Associated Gene/TranscriptCG5880-RA
Protein status:RT11029.pep: gold
Sequenced Size:1531

Clone Sequence Records

RT11029.complete Sequence

1531 bp assembled on 2011-02-23

GenBank Submission: BT126104.1

> RT11029.complete
AACAGCTGATTGAGTGATTTTAGCTGCAGAAGGTCACATCAAAACGAACT
TTGCAAATTCGCTCGCCAAAATAAAGTTTATTATCGCCAAAAATGCTGTA
ATTTAAATATAACATAAAATATAGGAAAGCTACCACTTGCTAAAAATGAC
ACGCATTACTTGGAGAGGTCACTCCACTCAGGAGTTGCTATCGATTTTGC
GGCTTCGTTGGTCATATATGAAGCACTGCTGGCACTCCTTAACTTTCAAC
GCCCACATGAACTCCTCCTACGCCTCGGACGTCTGCCTGACCCCTATTTT
TTGGTTTGTGGACAACTATACTCACTGCCTAGGACCGTTTTTTGTGGTTG
GCGTGGCTGCCTTGACGACTTCAGTCGTTAGTATTGCCTATTGGATTGGC
TTGCCCTTTTGGTGGGCCAAAAGTCAGTTGGTGACCTACTTCCTCCTCAT
TGTGGGCAACTGGCTGCTGCTCAATGTGGTTTTCCACTACGTTATGGCTG
TGATCACGCCGGCTGGTCATCCGCCAGAGGGCGTGTCCCTGGTAGAAGCG
GTTAGCATGTGCGGCAAGTGCATAGCTCCCAAACCACCGAGGACTCATCA
CTGCTCCATCTGCAATCGCTGCATACTTAAGATGGATCACCATTGTCCTT
GGCTCAACAATTGCGTGGGTTATGGTAATCATCGGTACTTCTTCCTCTAC
ATGACGTACACCACTCTGGGTTGTCTGTTTCTTATTTTGTTTGGCTTGGA
GATTGGCCACAAATACCTGTGGCTGGATCATGGTGAAAACTGGACGGAAA
TTGAGCCCTTGGAGGGGCAGCCAGTCAAGTTTAACCTCAGTGGACACATC
ATTCCAGTGACACATCCGAATGAGTATGATGAATTTGTGCTGCCTCCAGC
CGTGCACAATCTTCCAACACCCATTGTGGACACAGATGCCGCTTCGCCCG
GTCGACGACGAGCGCTTTGGTTCATGGCGTTCACAAACGTTGCCGTGGTC
TTGGCTCTCGGTAGCCTCTCCATCTGGCACGCCAAGCTAATCACTCGTGG
CGAGACCAGTGTGGAGGCTCACATCAACGAAGCTGAGCGAAAACGGCACC
TCCAGCAACAACGCATTTATATTAATCCTTATAACTTTGGCACCAAAAAG
AACTGGAAGCTGTTCTTGGGTCTGGTGCGGGGCAGATCCTTTTGGCGAAC
TGTGCTGCTTCCCTCCTGGCACAAACCCGAAGGTACTGGGCTGAGTTTCC
ACACGGTAAATGATGCTCCCTTCGAGGACGAGTGGCCATAATTCCAACAT
AGAAGCCATTGTGATGTCAGCAAGTCAATATTAAGTTAATAGTTTACGTT
TAAGCTCAAGGTAATAGAAATCCAAAGCTCTTGATTAGTAAAATTTAGTA
TTATAAACCTTCTACTCAAAATTGTAATGCAGTGAAATGCAAAGGCATGT
ACTTTGTTTCCATGACGACTAGGACTAGGCACAATGACGCTTTTATACTA
CTACTAGCTTAATAAAAGACACAACTAGCAT

RT11029.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22940882..22941554 859..1531 3320 99.6 Plus
chr3R 27901430 chr3R 22940236..22940546 337..647 1555 100 Plus
chr3R 27901430 chr3R 22940607..22940818 648..859 1060 100 Plus
chr3R 27901430 chr3R 22939762..22939950 1..189 930 99.5 Plus
chr3R 27901430 chr3R 22940029..22940176 190..337 740 100 Plus
chr2R 21145070 chr2R 11877755..11877830 669..594 200 84.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27117858..27118530 859..1531 3350 99.9 Plus
3R 32079331 3R 27117212..27117522 337..647 1555 100 Plus
3R 32079331 3R 27117583..27117794 648..859 1060 100 Plus
3R 32079331 3R 27116738..27116926 1..189 945 100 Plus
3R 32079331 3R 27117005..27117152 190..337 740 100 Plus
2R 25286936 2R 15990486..15990561 669..594 200 84.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26858689..26859361 859..1531 3350 99.8 Plus
3R 31820162 3R 26858043..26858353 337..647 1555 100 Plus
3R 31820162 3R 26858414..26858625 648..859 1060 100 Plus
3R 31820162 3R 26857569..26857757 1..189 945 100 Plus
3R 31820162 3R 26857836..26857983 190..337 740 100 Plus
2R 25260384 2R 15991685..15991760 669..594 200 84.2 Minus
Blast to na_te.dros performed on 2019-03-17 01:45:14 has no hits.

RT11029.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:45:57 Download gff for RT11029.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22939762..22939950 1..189 99 -> Plus
chr3R 22940029..22940176 190..337 100 -> Plus
chr3R 22940237..22940546 338..647 100 -> Plus
chr3R 22940607..22940818 648..859 100 -> Plus
chr3R 22940883..22941554 860..1531 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-02-23 10:37:16 Download gff for RT11029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5880-RA 1..1146 146..1291 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:51:43 Download gff for RT11029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5880-RA 1..1146 146..1291 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:10:01 Download gff for RT11029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5880-RA 1..1146 146..1291 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-23 10:37:15 Download gff for RT11029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5880-RA 1..1531 1..1531 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:51:43 Download gff for RT11029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5880-RA 1..1524 8..1531 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:10:01 Download gff for RT11029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5880-RA 1..1524 8..1531 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:45:57 Download gff for RT11029.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27116738..27116926 1..189 100 -> Plus
3R 27117005..27117152 190..337 100 -> Plus
3R 27117213..27117522 338..647 100 -> Plus
3R 27117583..27117794 648..859 100 -> Plus
3R 27117859..27118530 860..1531 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:45:57 Download gff for RT11029.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27116738..27116926 1..189 100 -> Plus
3R 27117005..27117152 190..337 100 -> Plus
3R 27117213..27117522 338..647 100 -> Plus
3R 27117583..27117794 648..859 100 -> Plus
3R 27117859..27118530 860..1531 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:45:57 Download gff for RT11029.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27116738..27116926 1..189 100 -> Plus
3R 27117005..27117152 190..337 100 -> Plus
3R 27117213..27117522 338..647 100 -> Plus
3R 27117583..27117794 648..859 100 -> Plus
3R 27117859..27118530 860..1531 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:51:43 Download gff for RT11029.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22942460..22942648 1..189 100 -> Plus
arm_3R 22942727..22942874 190..337 100 -> Plus
arm_3R 22942935..22943244 338..647 100 -> Plus
arm_3R 22943305..22943516 648..859 100 -> Plus
arm_3R 22943581..22944252 860..1531 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:00:00 Download gff for RT11029.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26857569..26857757 1..189 100 -> Plus
3R 26857836..26857983 190..337 100 -> Plus
3R 26858044..26858353 338..647 100 -> Plus
3R 26858414..26858625 648..859 100 -> Plus
3R 26858690..26859361 860..1531 99   Plus

RT11029.pep Sequence

Translation from 145 to 1290

> RT11029.pep
MTRITWRGHSTQELLSILRLRWSYMKHCWHSLTFNAHMNSSYASDVCLTP
IFWFVDNYTHCLGPFFVVGVAALTTSVVSIAYWIGLPFWWAKSQLVTYFL
LIVGNWLLLNVVFHYVMAVITPAGHPPEGVSLVEAVSMCGKCIAPKPPRT
HHCSICNRCILKMDHHCPWLNNCVGYGNHRYFFLYMTYTTLGCLFLILFG
LEIGHKYLWLDHGENWTEIEPLEGQPVKFNLSGHIIPVTHPNEYDEFVLP
PAVHNLPTPIVDTDAASPGRRRALWFMAFTNVAVVLALGSLSIWHAKLIT
RGETSVEAHINEAERKRHLQQQRIYINPYNFGTKKNWKLFLGLVRGRSFW
RTVLLPSWHKPEGTGLSFHTVNDAPFEDEWP*

RT11029.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23277-PA 381 GF23277-PA 1..381 1..381 1915 92.1 Plus
Dana\GF17953-PA 427 GF17953-PA 53..148 106..194 225 43.8 Plus
Dana\GF12009-PA 338 GF12009-PA 118..188 126..196 211 46.5 Plus
Dana\GF13331-PA 295 GF13331-PA 90..187 115..198 208 40.8 Plus
Dana\GF20610-PA 239 GF20610-PA 66..152 115..190 204 41.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11528-PA 381 GG11528-PA 1..381 1..381 2003 98.2 Plus
Dere\GG18872-PA 428 GG18872-PA 53..148 106..194 222 44.3 Plus
Dere\GG25240-PA 438 GG25240-PA 118..193 126..201 217 46.1 Plus
Dere\GG10348-PA 276 GG10348-PA 86..162 121..197 213 46.8 Plus
Dere\GG22313-PA 293 GG22313-PA 74..185 101..198 209 37.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18968-PA 381 GH18968-PA 1..381 1..381 1724 82.2 Plus
Dgri\GH13870-PA 419 GH13870-PA 53..148 106..194 224 41.7 Plus
Dgri\GH20289-PA 470 GH20289-PA 119..194 126..201 219 46.1 Plus
Dgri\GH15638-PA 417 GH15638-PA 17..160 63..208 217 34 Plus
Dgri\GH19831-PA 290 GH19831-PA 14..182 55..198 207 31.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5880-PA 381 CG5880-PA 1..381 1..381 2132 100 Plus
CG5196-PB 395 CG5196-PB 5..139 89..213 235 37.2 Plus
CG5196-PA 427 CG5196-PA 37..171 89..213 235 37.2 Plus
CG1407-PC 227 CG1407-PC 127..193 135..201 225 50.7 Plus
CG1407-PB 338 CG1407-PB 127..193 135..201 225 50.7 Plus
CG1407-PD 352 CG1407-PD 127..193 135..201 225 50.7 Plus
CG1407-PE 440 CG1407-PE 127..193 135..201 225 50.7 Plus
CG1407-PA 443 CG1407-PA 127..193 135..201 225 50.7 Plus
CG1407-PF 449 CG1407-PF 127..193 135..201 225 50.7 Plus
CG1407-PG 452 CG1407-PG 127..193 135..201 225 50.7 Plus
Dnz1-PA 276 CG6627-PA 86..162 121..197 221 46.8 Plus
CG8314-PA 293 CG8314-PA 88..185 115..198 217 40.8 Plus
CG4483-PA 435 CG4483-PA 38..168 89..210 198 29.8 Plus
CG17287-PA 338 CG17287-PA 124..184 136..196 197 49.2 Plus
Hip14-PC 637 CG6017-PC 427..493 134..200 194 40.3 Plus
Hip14-PA 637 CG6017-PA 427..493 134..200 194 40.3 Plus
Hip14-PB 655 CG6017-PB 427..493 134..200 194 40.3 Plus
CG18810-PA 300 CG18810-PA 52..154 99..194 184 36.9 Plus
app-PO 382 CG42318-PO 149..216 139..208 184 41.4 Plus
app-PI 398 CG42318-PI 149..216 139..208 184 41.4 Plus
app-PH 398 CG42318-PH 149..216 139..208 184 41.4 Plus
CG34449-PC 500 CG34449-PC 101..161 139..201 184 47.6 Plus
CG34449-PD 523 CG34449-PD 101..161 139..201 184 47.6 Plus
app-PR 693 CG42318-PR 149..216 139..208 184 41.4 Plus
app-PM 693 CG42318-PM 149..216 139..208 184 41.4 Plus
app-PL 693 CG42318-PL 149..216 139..208 184 41.4 Plus
app-PT 693 CG42318-PT 149..216 139..208 184 41.4 Plus
app-PK 755 CG42318-PK 149..216 139..208 184 41.4 Plus
app-PJ 755 CG42318-PJ 149..216 139..208 184 41.4 Plus
CG34449-PF 852 CG34449-PF 101..161 139..201 184 47.6 Plus
CG34449-PG 906 CG34449-PG 96..156 139..201 184 47.6 Plus
CG34449-PB 911 CG34449-PB 101..161 139..201 184 47.6 Plus
CG34449-PA 934 CG34449-PA 101..161 139..201 184 47.6 Plus
CG34449-PE 1052 CG34449-PE 101..161 139..201 184 47.6 Plus
CG10344-PA 198 CG10344-PA 18..172 99..219 183 29.6 Plus
CG10344-PB 278 CG10344-PB 18..172 99..219 183 29.6 Plus
CG17198-PB 299 CG17198-PB 74..186 102..207 183 31.9 Plus
CG17198-PA 299 CG17198-PA 74..186 102..207 183 31.9 Plus
CG4676-PA 284 CG4676-PA 21..191 65..232 182 27.1 Plus
Patsas-PA 585 CG6618-PA 426..487 138..199 176 43.5 Plus
CG13029-PC 288 CG13029-PC 107..207 139..232 175 32.7 Plus
CG4956-PA 302 CG4956-PA 90..178 102..192 174 36.3 Plus
CG17195-PA 283 CG17195-PA 18..174 57..200 169 28.7 Plus
CG17196-PB 251 CG17196-PB 80..149 139..216 164 39.7 Plus
CG17196-PC 253 CG17196-PC 82..151 139..216 164 39.7 Plus
CG17196-PA 276 CG17196-PA 105..174 139..216 164 39.7 Plus
CG17075-PB 968 CG17075-PB 128..258 81..197 155 28.6 Plus
CG17075-PA 968 CG17075-PA 128..258 81..197 155 28.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23298-PA 381 GI23298-PA 1..381 1..381 1725 83.7 Plus
Dmoj\GI24824-PA 425 GI24824-PA 53..172 106..214 233 40 Plus
Dmoj\GI19459-PA 373 GI19459-PA 118..188 126..196 216 46.5 Plus
Dmoj\GI17806-PA 265 GI17806-PA 93..147 137..191 209 56.4 Plus
Dmoj\GI20419-PA 290 GI20419-PA 71..182 101..198 206 36.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23902-PA 381 GL23902-PA 1..381 1..381 1824 87.4 Plus
Dper\GL17257-PA 341 GL17257-PA 156..229 135..207 226 52.7 Plus
Dper\GL27308-PA 426 GL27308-PA 60..171 111..213 221 40.2 Plus
Dper\GL11511-PA 338 GL11511-PA 118..188 126..196 219 47.9 Plus
Dper\GL20650-PA 286 GL20650-PA 67..178 101..198 212 38.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27100-PA 381 GA27100-PA 1..381 1..381 1824 87.4 Plus
Dpse\GA24151-PA 341 GA24151-PA 156..229 135..207 224 51.4 Plus
Dpse\GA18728-PA 426 GA18728-PA 60..171 111..213 224 40.2 Plus
Dpse\GA24148-PA 341 GA24148-PA 156..229 135..207 223 51.4 Plus
Dpse\GA24755-PA 338 GA24755-PA 118..188 126..196 219 47.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10369-PA 381 GM10369-PA 1..381 1..381 2026 99.2 Plus
Dsec\GM24028-PA 427 GM24028-PA 53..148 106..194 222 44.3 Plus
Dsec\GM20560-PA 440 GM20560-PA 118..193 126..201 214 46.1 Plus
Dsec\GM11347-PA 276 GM11347-PA 86..162 121..197 213 46.8 Plus
Dsec\GM20103-PA 293 GM20103-PA 74..185 101..198 208 37.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21328-PA 132 GD21328-PA 1..128 1..128 652 97.7 Plus
Dsim\GD18828-PA 427 GD18828-PA 53..148 106..194 222 44.3 Plus
Dsim\GD26013-PA 440 GD26013-PA 118..193 126..201 214 46.1 Plus
Dsim\GD22217-PA 276 GD22217-PA 86..162 121..197 213 46.8 Plus
Dsim\GD25579-PA 293 GD25579-PA 74..185 101..198 209 37.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24153-PA 382 GJ24153-PA 1..382 1..381 1737 84.3 Plus
Dvir\GJ24468-PA 425 GJ24468-PA 53..171 106..213 231 40.3 Plus
Dvir\GJ21210-PA 480 GJ21210-PA 118..302 126..373 225 27 Plus
Dvir\GJ17630-PA 277 GJ17630-PA 103..168 137..204 207 51.5 Plus
Dvir\GJ20091-PA 289 GJ20091-PA 13..181 55..198 206 31.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11281-PA 381 GK11281-PA 1..381 1..381 1798 89 Plus
Dwil\GK14400-PA 422 GK14400-PA 36..148 88..194 224 40 Plus
Dwil\GK21953-PA 367 GK21953-PA 118..190 126..198 215 46.6 Plus
Dwil\GK22100-PA 291 GK22100-PA 72..183 101..198 211 38.4 Plus
Dwil\GK24311-PA 391 GK24311-PA 57..145 111..194 208 39.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23718-PA 381 GE23718-PA 1..381 1..381 2007 97.6 Plus
Dyak\GE26189-PA 428 GE26189-PA 53..148 106..194 222 44.3 Plus
Dyak\GE21863-PA 465 GE21863-PA 118..193 126..201 216 46.1 Plus
Dyak\GE13229-PA 276 GE13229-PA 86..162 121..197 213 46.8 Plus
Dyak\GE14111-PA 293 GE14111-PA 74..185 101..198 209 37.5 Plus

RT11029.hyp Sequence

Translation from 145 to 1290

> RT11029.hyp
MTRITWRGHSTQELLSILRLRWSYMKHCWHSLTFNAHMNSSYASDVCLTP
IFWFVDNYTHCLGPFFVVGVAALTTSVVSIAYWIGLPFWWAKSQLVTYFL
LIVGNWLLLNVVFHYVMAVITPAGHPPEGVSLVEAVSMCGKCIAPKPPRT
HHCSICNRCILKMDHHCPWLNNCVGYGNHRYFFLYMTYTTLGCLFLILFG
LEIGHKYLWLDHGENWTEIEPLEGQPVKFNLSGHIIPVTHPNEYDEFVLP
PAVHNLPTPIVDTDAASPGRRRALWFMAFTNVAVVLALGSLSIWHAKLIT
RGETSVEAHINEAERKRHLQQQRIYINPYNFGTKKNWKLFLGLVRGRSFW
RTVLLPSWHKPEGTGLSFHTVNDAPFEDEWP*

RT11029.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5880-PA 381 CG5880-PA 1..381 1..381 2132 100 Plus
CG5196-PB 395 CG5196-PB 5..139 89..213 235 37.2 Plus
CG5196-PA 427 CG5196-PA 37..171 89..213 235 37.2 Plus
CG1407-PC 227 CG1407-PC 127..193 135..201 225 50.7 Plus
CG1407-PB 338 CG1407-PB 127..193 135..201 225 50.7 Plus