Clone RT11831 Report

Search the DGRC for RT11831

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:118
Well:31
Vector:pCR2.1
Associated Gene/TranscriptHr83-RA
Protein status:RT11831.pep: gold
Sequenced Size:837

Clone Sequence Records

RT11831.complete Sequence

837 bp assembled on 2011-06-13

GenBank Submission: BT128747.1

> RT11831.complete
ATGTCGAACTTCAGTGCCTGCGCAGTGTGCGGCGATCAGAGCTCCGGGAA
GCACTACGGCGTGTCCTGCTGCGATGGGTGCTCCTGCTTTTTCAAGCGGA
GCGTGCGGCGCGGGAGCAGCTACGCCTGCATCGCTCTGGTCGGGAACTGT
GTGGTGGACAAGGCGCGGCGGAACTGGTGTCCCTCCTGCCGCTTCCAGCG
ATGCCTGGCCGTGGGAATGAACGCTGCTGCGGTTCAGGAGGAGCGCGGTC
CGCGCAACCAGCAGGTGGCTCTCTACCGCACTGGCCGGAGACAAGCTCCG
CCATCTCAGGCGGCGCCATCCCCGACGCCCCACTCCCAGGCGCTGCACTT
CCAGATCCTCGCCCAGATCCTTGTCACGTGCCTGCGCCAGGCGAAGGCCA
ACGAGCAGTTCGCTCTGTTGGATCGCTGCCAACAAGACGCCATCTTTCAG
GTGGTGTGGAGCGAGATCTTCGTCCTGCGAGCGTCCCACTGGTCTCTGGA
CATCAGCGCCATGATCGACGGCTGCGGCGATGAGCAGCTCAAACGGCTCA
TTTGCGAGGCCCACCAGCTAAGGGCCGACGTCCTGGAACTCAACTTTATG
GAGTCCCTAATCCTGTGCAGAAAAGAATTGGCCATCAATGCGGAGTATGC
CGTTATCCTGGGAAGCCACTCTAAAGCCGCCCTGATCTCCTTAGCCCGCT
ACACCCTGCAGCAATCCAACTACCTGCGGTTCGGACAACTGCTCCTTGGT
CTGAGGCAGCTGTGCCTGAGGCGCTTCGACTGCGCGCTTTCTTGTATGTT
TCGCAGCGTGGTCAGGGACATCTTAAAAACACTTTAG

RT11831.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2174920..2175544 1..625 3125 100 Plus
chr3R 27901430 chr3R 2175976..2176189 624..837 1055 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6349243..6349867 1..625 3125 100 Plus
3R 32079331 3R 6350299..6350512 624..837 1070 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6090074..6090698 1..625 3125 100 Plus
3R 31820162 3R 6091130..6091343 624..837 1070 100 Plus
Blast to na_te.dros performed on 2019-03-15 10:43:24 has no hits.

RT11831.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:44:33 Download gff for RT11831.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2174920..2175544 1..625 100 -> Plus
chr3R 2175978..2176189 626..837 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-06-13 15:55:40 Download gff for RT11831.complete
Subject Subject Range Query Range Percent Splice Strand
Hr83-RA 1..837 1..837 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:24:06 Download gff for RT11831.complete
Subject Subject Range Query Range Percent Splice Strand
Hr83-RA 1..837 1..837 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:10:47 Download gff for RT11831.complete
Subject Subject Range Query Range Percent Splice Strand
Hr83-RA 1..837 1..837 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-13 15:55:39 Download gff for RT11831.complete
Subject Subject Range Query Range Percent Splice Strand
Hr83-RA 1..837 1..837 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:24:06 Download gff for RT11831.complete
Subject Subject Range Query Range Percent Splice Strand
Hr83-RA 1..837 1..837 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:47 Download gff for RT11831.complete
Subject Subject Range Query Range Percent Splice Strand
Hr83-RA 1..837 1..837 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:44:33 Download gff for RT11831.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6349243..6349867 1..625 100 -> Plus
3R 6350301..6350512 626..837 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:44:33 Download gff for RT11831.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6349243..6349867 1..625 100 -> Plus
3R 6350301..6350512 626..837 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:44:33 Download gff for RT11831.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6349243..6349867 1..625 100 -> Plus
3R 6350301..6350512 626..837 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:24:06 Download gff for RT11831.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2174965..2175589 1..625 100 -> Plus
arm_3R 2176023..2176234 626..837 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:08:33 Download gff for RT11831.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6090074..6090698 1..625 100 -> Plus
3R 6091132..6091343 626..837 100   Plus

RT11831.pep Sequence

Translation from 0 to 836

> RT11831.pep
MSNFSACAVCGDQSSGKHYGVSCCDGCSCFFKRSVRRGSSYACIALVGNC
VVDKARRNWCPSCRFQRCLAVGMNAAAVQEERGPRNQQVALYRTGRRQAP
PSQAAPSPTPHSQALHFQILAQILVTCLRQAKANEQFALLDRCQQDAIFQ
VVWSEIFVLRASHWSLDISAMIDGCGDEQLKRLICEAHQLRADVLELNFM
ESLILCRKELAINAEYAVILGSHSKAALISLARYTLQQSNYLRFGQLLLG
LRQLCLRRFDCALSCMFRSVVRDILKTL*

RT11831.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16659-PA 278 GF16659-PA 1..278 1..278 1150 84.2 Plus
Dana\GF13031-PA 552 GF13031-PA 80..159 7..86 280 63.7 Plus
Dana\GF22927-PA 456 GF22927-PA 34..125 7..93 275 55.4 Plus
Dana\GF15588-PA 702 GF15588-PA 12..98 6..89 261 55.2 Plus
Dana\GF17240-PA 826 GF17240-PA 205..398 7..168 249 34.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13368-PA 279 GG13368-PA 1..279 1..278 1220 91 Plus
Dere\GG11781-PA 438 GG11781-PA 34..125 7..93 274 55.4 Plus
Dere\GG25103-PA 693 GG25103-PA 13..98 7..89 260 55.8 Plus
Dere\GG18706-PA 543 GG18706-PA 200..393 7..168 249 34.9 Plus
Dere\GG12659-PA 507 GG12659-PA 103..183 7..86 243 56.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18089-PA 287 GH18089-PA 3..287 1..278 982 70.6 Plus
Dgri\GH20426-PA 207 GH20426-PA 99..178 7..86 274 63.7 Plus
Dgri\GH14219-PA 445 GH14219-PA 33..138 6..106 274 50.9 Plus
Dgri\GH11011-PA 719 GH11011-PA 18..104 6..89 261 55.2 Plus
Dgri\GH17319-PA 542 GH17319-PA 199..498 7..254 250 30.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
Hr83-PA 278 CG10296-PA 1..278 1..278 1457 100 Plus
Hr51-PC 582 CG16801-PC 111..190 7..86 285 65 Plus
tll-PA 452 CG1378-PA 34..125 7..93 270 55.4 Plus
svp-PB 543 CG11502-PB 200..499 7..254 268 30.1 Plus
svp-PE 554 CG11502-PE 200..499 7..254 268 30.1 Plus
svp-PA 746 CG11502-PA 200..393 7..168 263 34.9 Plus
dsf-PB 691 CG9019-PB 13..123 7..116 260 47.8 Plus
dsf-PA 691 CG9019-PA 13..123 7..116 260 47.8 Plus
usp-PB 508 CG4380-PB 104..205 7..107 255 48.5 Plus
usp-PA 508 CG4380-PA 104..205 7..107 255 48.5 Plus
Hnf4-PF 666 CG9310-PF 102..178 5..82 242 53.8 Plus
Hnf4-PE 704 CG9310-PE 140..216 5..82 242 53.8 Plus
Hnf4-PA 704 CG9310-PA 140..216 5..82 242 53.8 Plus
Hnf4-PD 708 CG9310-PD 144..220 5..82 242 53.8 Plus
Hnf4-PB 732 CG9310-PB 168..244 5..82 242 53.8 Plus
Hr38-PD 836 CG1864-PD 507..603 7..108 238 47.1 Plus
Hr38-PB 1078 CG1864-PB 749..845 7..108 238 47.1 Plus
Hr78-PF 601 CG7199-PF 52..128 7..84 224 52.6 Plus
Hr78-PE 601 CG7199-PE 52..128 7..84 224 52.6 Plus
Hr78-PB 601 CG7199-PB 52..128 7..84 224 52.6 Plus
Hr78-PD 601 CG7199-PD 52..128 7..84 224 52.6 Plus
Hr78-PC 601 CG7199-PC 52..128 7..84 224 52.6 Plus
ftz-f1-PC 803 CG4059-PC 284..374 7..96 222 46.7 Plus
ftz-f1-PA 803 CG4059-PA 284..374 7..96 222 46.7 Plus
ftz-f1-PD 853 CG4059-PD 284..374 7..96 222 46.7 Plus
ftz-f1-PB 1027 CG4059-PB 508..598 7..96 222 46.7 Plus
Eip78C-PE 862 CG18023-PE 359..443 3..88 213 43 Plus
Eip78C-PD 862 CG18023-PD 359..443 3..88 213 43 Plus
Eip78C-PA 862 CG18023-PA 359..443 3..88 213 43 Plus
Hr78-PA 599 CG7199-PA 52..126 7..84 211 52.6 Plus
Hr4-PC 1518 CG43934-PC 921..997 7..84 207 46.2 Plus
Hr4-PD 1529 CG43934-PD 931..1007 7..84 207 46.2 Plus
Hr4-PF 1611 CG43934-PF 1014..1090 7..84 207 46.2 Plus
Hr4-PE 1842 CG43934-PE 1245..1321 7..84 207 46.2 Plus
Hr4-PK 1843 CG43934-PK 1245..1321 7..84 207 46.2 Plus
Hr4-PJ 1843 CG43934-PJ 1245..1321 7..84 207 46.2 Plus
Hr4-PH 1863 CG43934-PH 921..997 7..84 207 46.2 Plus
Hr4-PG 1986 CG43934-PG 1388..1464 7..84 207 46.2 Plus
Hr4-PI 2123 CG43934-PI 921..997 7..84 207 46.2 Plus
Hr39-PC 701 CG8676-PC 374..479 5..114 204 38.4 Plus
Hr39-PD 808 CG8676-PD 374..479 5..114 204 38.4 Plus
Hr39-PA 808 CG8676-PA 374..479 5..114 204 38.4 Plus
Hr39-PB 808 CG8676-PB 374..479 5..114 204 38.4 Plus
Hr3-PD 456 CG33183-PD 22..136 7..112 202 41.4 Plus
Hr3-PF 487 CG33183-PF 51..165 7..112 202 41.4 Plus
Hr3-PA 487 CG33183-PA 51..165 7..112 202 41.4 Plus
Hr3-PH 529 CG33183-PH 51..165 7..112 202 41.4 Plus
Hr3-PC 694 CG33183-PC 260..374 7..112 202 41.4 Plus
Hr3-PI 871 CG33183-PI 437..551 7..112 202 41.4 Plus
ERR-PA 484 CG7404-PA 115..189 7..82 195 46.1 Plus
ERR-PB 496 CG7404-PB 127..201 7..82 195 46.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24589-PA 277 GI24589-PA 7..277 4..278 990 74.2 Plus
Dmoj\GI19610-PA 589 GI19610-PA 150..229 7..86 279 65 Plus
Dmoj\GI22125-PA 450 GI22125-PA 34..125 7..93 275 55.4 Plus
Dmoj\GI17531-PA 736 GI17531-PA 12..98 6..89 261 55.2 Plus
Dmoj\GI10282-PA 812 GI10282-PA 196..389 7..168 252 35.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22067-PA 282 GL22067-PA 1..282 1..278 1095 80.1 Plus
Dper\GL13521-PA 454 GL13521-PA 34..125 7..93 274 55.4 Plus
Dper\GL17752-PA 333 GL17752-PA 156..235 7..86 273 63.7 Plus
Dper\GL19043-PA 819 GL19043-PA 140..226 6..89 262 55.2 Plus
Dper\GL22274-PA 777 GL22274-PA 196..389 7..168 251 34.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10225-PA 282 GA10225-PA 1..282 1..278 1106 80.5 Plus
Dpse\GA30480-PA 626 GA30480-PA 153..232 7..86 280 63.7 Plus
Dpse\GA12521-PA 454 GA12521-PA 34..125 7..93 274 55.4 Plus
Dpse\GA21482-PA 691 GA21482-PA 12..98 6..89 261 55.2 Plus
Dpse\GA11038-PA 777 GA11038-PA 196..389 7..168 251 34.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10889-PA 278 GM10889-PA 1..278 1..278 1423 97.1 Plus
Dsec\GM18579-PA 184 GM18579-PA 12..98 6..89 247 55.2 Plus
Dsec\GM18927-PA 505 GM18927-PA 101..181 7..86 243 56.1 Plus
Dsec\GM12759-PA 703 GM12759-PA 139..215 5..82 243 53.8 Plus
Dsec\GM14921-PA 974 GM14921-PA 504..594 7..96 231 46.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19868-PA 278 GD19868-PA 1..278 1..278 1420 97.1 Plus
Dsim\GD11109-PA 414 GD11109-PA 111..279 7..176 296 39.2 Plus
Dsim\GD21550-PA 452 GD21550-PA 33..125 6..93 275 54.8 Plus
Dsim\GD18809-PA 680 GD18809-PA 200..393 7..168 248 34.9 Plus
Dsim\GD22387-PA 703 GD22387-PA 139..215 5..82 243 53.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22654-PA 280 GJ22654-PA 4..280 1..278 1022 76.3 Plus
Dvir\GJ14974-PA 577 GJ14974-PA 99..178 7..86 280 63.7 Plus
Dvir\tll-PA 450 GJ24246-PA 34..125 7..93 275 55.4 Plus
Dvir\GJ15408-PA 726 GJ15408-PA 12..98 6..89 261 55.2 Plus
Dvir\GJ11090-PA 787 GJ11090-PA 195..388 7..168 252 35.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13826-PA 286 GK13826-PA 18..286 7..278 1065 73.9 Plus
Dwil\GK20892-PA 573 GK20892-PA 101..180 7..86 281 63.7 Plus
Dwil\GK14159-PA 457 GK14159-PA 33..125 6..93 274 54.8 Plus
Dwil\GK14705-PA 730 GK14705-PA 12..98 6..89 263 55.2 Plus
Dwil\GK25746-PA 483 GK25746-PA 91..180 7..102 247 50 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10213-PA 278 GE10213-PA 1..278 1..278 1273 90.3 Plus
Dyak\GE13645-PA 654 GE13645-PA 189..268 7..86 282 65 Plus
Dyak\GE10907-PA 452 GE10907-PA 34..125 7..93 275 55.4 Plus
Dyak\GE25723-PA 691 GE25723-PA 12..98 6..89 260 55.2 Plus
Dyak\GE26169-PA 543 GE26169-PA 200..393 7..168 249 34.9 Plus

RT11831.hyp Sequence

Translation from 1 to 836

> RT11831.hyp
MSNFSACAVCGDQSSGKHYGVSCCDGCSCFFKRSVRRGSSYACIALVGNC
VVDKARRNWCPSCRFQRCLAVGMNAAAVQEERGPRNQQVALYRTGRRQAP
PSQAAPSPTPHSQALHFQILAQILVTCLRQAKANEQFALLDRCQQDAIFQ
VVWSEIFVLRASHWSLDISAMIDGCGDEQLKRLICEAHQLRADVLELNFM
ESLILCRKELAINAEYAVILGSHSKAALISLARYTLQQSNYLRFGQLLLG
LRQLCLRRFDCALSCMFRSVVRDILKTL*

RT11831.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Hr83-PA 278 CG10296-PA 1..278 1..278 1457 100 Plus
Hr51-PC 582 CG16801-PC 111..190 7..86 285 65 Plus
tll-PA 452 CG1378-PA 34..125 7..93 270 55.4 Plus
dsf-PB 691 CG9019-PB 13..123 7..116 260 47.8 Plus
dsf-PA 691 CG9019-PA 13..123 7..116 260 47.8 Plus