Clone RT11843 Report

Search the DGRC for RT11843

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:118
Well:43
Vector:pCR2.1
Associated Gene/Transcriptranshi-RA
Protein status:RT11843.pep: gold
Sequenced Size:1142

Clone Sequence Records

RT11843.complete Sequence

1142 bp assembled on 2011-06-14

GenBank Submission: BT128749.1

> RT11843.complete
TTTATCGGCTCAAAAATGGAAGGAAAAGTGTGTCGCACTTGCGGCAAGCG
CACGAATGCTGAAAGATCATTGAATATTTTTGAAAAGCGCAATCAAACTA
CGCTGGAACACATCAAACTACTAACTGGAGCTGTGTTAAAGAACTGTAGT
ACGTTGCCAAATCGACTATGTGCGTCCTGCCAAACTTGTTTGCAACAAGC
CATATCCTTTAGGGAACGCTGTTTGGAAGTCCAAAGGGAGTTGCTCCATT
CCCAAGATGATGAAGACTTCCTTAGAATCTGCCAGGAATCTCCCAAAAGT
GTCCTTGAGCAGGAGGAGTTGGAACTGGATCTGGCAGAAATAAGCATAGA
AGTCGAGCGATTAGACGATCTCAATGAAGGGCCCATTCAAAGCTCCGGTT
TTAAAGTGGAGGACATTCTAAATGAATCTAAAATCAACGAAGACGAGCCC
AATAATGAGGACGATATTGATTATAGTGAAATGGATTACCTTATTTACGA
AAGCGATACTGAAGTAGATGCAAAGCAGGAACTCAAATCAGACTCTGAGA
ATCCCAAAAAAAGGAGAAATCGTCGAAATCCCCGCGACTCCAATAGGACC
TTCTTTTGTGAGGAGTGCGGAAATCACATAAAAGATCGAATATCATTCAT
ACTGCATTGTAAGCGACATCGCGGCGTCAAGGAGTTTGGGTGCGAATTCT
GTGAGGATCGCTTCTGCACGCCGGCGGAACTTAAGCGTCACATTCGCAAG
CATACCGGGGAAAAGCCCTTCAAGTGCAGACACTGTTCCCGCAGCTTTTC
TGACTACAGCACTCGGTTGAAGCACGAGCGGACTCACACTAACGAACGAC
CTTTTGTCTGCAAGGAGTGTAACAATGCCTTCACAACATCCTATATTCTT
AAGAACCACATGCTCGTGCATACCGGGGAGAAGGCTTTTAGGTGCGACCT
CTGCGATAAGTTATTCAGTCGCTACACACACCTTACTACCCATTATCGTT
CAAATGCTCACAGACGAAACATGCAGAAAGCAGACACAATCTTTGATAAA
CCCTAAAAGGTATCACTTAAGAAGCTCTTAGTTGAAAACGGTTGCATTAC
CAAAATAGGAATTTTTACAAAAAAAATCAAAACGGATAATCA

RT11843.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4554890..4555450 695..135 2790 99.8 Minus
chr3R 27901430 chr3R 4554590..4554837 943..696 1240 100 Minus
chr3R 27901430 chr3R 4554333..4554534 1141..940 1010 100 Minus
chr3R 27901430 chr3R 4555507..4555641 135..1 675 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8728924..8729484 695..135 2805 100 Minus
3R 32079331 3R 8728624..8728871 943..696 1240 100 Minus
3R 32079331 3R 8728366..8728568 1142..940 1015 100 Minus
3R 32079331 3R 8729541..8729675 135..1 675 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8469755..8470315 695..135 2805 100 Minus
3R 31820162 3R 8469455..8469702 943..696 1240 100 Minus
3R 31820162 3R 8469197..8469399 1142..940 1015 100 Minus
3R 31820162 3R 8470372..8470506 135..1 675 100 Minus
Blast to na_te.dros performed on 2019-03-15 10:43:30 has no hits.

RT11843.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:44:37 Download gff for RT11843.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4554333..4554532 942..1141 100 <- Minus
chr3R 4554592..4554837 696..941 100 <- Minus
chr3R 4554890..4555449 136..695 99 <- Minus
chr3R 4555507..4555641 1..135 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-06-14 11:36:39 Download gff for RT11843.complete
Subject Subject Range Query Range Percent Splice Strand
ranshi-RA 1..1041 16..1056 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:24:13 Download gff for RT11843.complete
Subject Subject Range Query Range Percent Splice Strand
ranshi-RA 1..1041 16..1056 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:10:53 Download gff for RT11843.complete
Subject Subject Range Query Range Percent Splice Strand
ranshi-RA 1..1041 16..1056 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-14 11:36:39 Download gff for RT11843.complete
Subject Subject Range Query Range Percent Splice Strand
ranshi-RA 19..1159 1..1141 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:24:13 Download gff for RT11843.complete
Subject Subject Range Query Range Percent Splice Strand
ranshi-RA 19..1159 1..1141 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:53 Download gff for RT11843.complete
Subject Subject Range Query Range Percent Splice Strand
ranshi-RA 19..1159 1..1141 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:44:37 Download gff for RT11843.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8728367..8728566 942..1141 100 <- Minus
3R 8728626..8728871 696..941 100 <- Minus
3R 8728924..8729483 136..695 100 <- Minus
3R 8729541..8729675 1..135 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:44:37 Download gff for RT11843.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8728367..8728566 942..1141 100 <- Minus
3R 8728626..8728871 696..941 100 <- Minus
3R 8728924..8729483 136..695 100 <- Minus
3R 8729541..8729675 1..135 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:44:37 Download gff for RT11843.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8728367..8728566 942..1141 100 <- Minus
3R 8728626..8728871 696..941 100 <- Minus
3R 8728924..8729483 136..695 100 <- Minus
3R 8729541..8729675 1..135 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:24:13 Download gff for RT11843.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4554089..4554288 942..1141 100 <- Minus
arm_3R 4554348..4554593 696..941 100 <- Minus
arm_3R 4554646..4555205 136..695 100 <- Minus
arm_3R 4555263..4555397 1..135 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:08:36 Download gff for RT11843.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8469198..8469397 942..1141 100 <- Minus
3R 8469457..8469702 696..941 100 <- Minus
3R 8469755..8470314 136..695 100 <- Minus
3R 8470372..8470506 1..135 100   Minus

RT11843.pep Sequence

Translation from 0 to 1055

> RT11843.pep
FIGSKMEGKVCRTCGKRTNAERSLNIFEKRNQTTLEHIKLLTGAVLKNCS
TLPNRLCASCQTCLQQAISFRERCLEVQRELLHSQDDEDFLRICQESPKS
VLEQEELELDLAEISIEVERLDDLNEGPIQSSGFKVEDILNESKINEDEP
NNEDDIDYSEMDYLIYESDTEVDAKQELKSDSENPKKRRNRRNPRDSNRT
FFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRK
HTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYIL
KNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRRNMQKADTIFDK
P*

RT11843.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16841-PA 430 GF16841-PA 12..407 10..345 724 39.5 Plus
Dana\GF18186-PA 409 GF18186-PA 5..344 10..344 594 38.3 Plus
Dana\GF18185-PA 317 GF18185-PA 6..315 11..342 506 37.4 Plus
Dana\GF18382-PA 383 GF18382-PA 3..377 7..347 449 33.8 Plus
Dana\GF22975-PA 367 GF22975-PA 5..338 11..340 446 32 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17430-PA 347 GG17430-PA 1..342 6..351 1502 84.7 Plus
Dere\GG17429-PA 418 GG17429-PA 12..395 10..345 732 42.2 Plus
Dere\GG12737-PA 394 GG12737-PA 1..339 6..346 611 38.6 Plus
Dere\GG12626-PA 304 GG12626-PA 1..297 6..342 544 35 Plus
Dere\GG18277-PA 381 GG18277-PA 3..367 7..342 447 31.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19018-PA 716 GH19018-PA 349..710 12..345 730 41.8 Plus
Dgri\GH19016-PA 442 GH19016-PA 4..414 2..343 661 39 Plus
Dgri\GH19018-PA 716 GH19018-PA 1..349 10..314 606 39.9 Plus
Dgri\GH18576-PA 371 GH18576-PA 1..359 10..343 592 36.1 Plus
Dgri\GH18577-PA 386 GH18577-PA 6..350 11..351 563 38 Plus
Dgri\GH18111-PA 383 GH18111-PA 6..377 10..347 442 31.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
ranshi-PA 346 CG9793-PA 1..346 6..351 1869 100 Plus
M1BP-PA 418 CG9797-PA 13..395 11..345 758 39.8 Plus
CG8159-PB 399 CG8159-PB 5..335 10..344 646 39 Plus
ouib-PA 312 CG11762-PA 5..309 10..343 599 36.1 Plus
CG18764-PA 409 CG18764-PA 5..402 11..347 491 33.7 Plus
CG1792-PA 372 CG1792-PA 1..346 6..351 485 34.7 Plus
CG31441-PA 341 CG31441-PA 7..338 10..344 479 30.1 Plus
CG14711-PA 377 CG14711-PA 3..366 7..341 479 31.4 Plus
nom-PB 370 CG8145-PB 5..324 10..342 459 32.9 Plus
nom-PC 370 CG8145-PC 5..324 10..342 459 32.9 Plus
nom-PA 370 CG8145-PA 5..324 10..342 459 32.9 Plus
CG17806-PA 421 CG17806-PA 4..406 10..343 446 29.1 Plus
CG14710-PB 415 CG14710-PB 10..404 11..343 410 28.2 Plus
CG4854-PA 319 CG4854-PA 33..317 36..342 399 29.5 Plus
CG17802-PA 439 CG17802-PA 5..425 11..341 384 28.7 Plus
trem-PA 439 CG4413-PA 11..409 10..338 383 27.6 Plus
CG9215-PA 560 CG9215-PA 204..435 95..331 379 31.3 Plus
CG6813-PC 294 CG6813-PC 6..286 11..343 378 28.7 Plus
Zif-PC 388 CG10267-PC 8..369 9..347 375 26.3 Plus
Zif-PB 388 CG10267-PB 8..369 9..347 375 26.3 Plus
Zif-PA 388 CG10267-PA 8..369 9..347 375 26.3 Plus
CG4424-PA 345 CG4424-PA 10..323 10..337 366 28.3 Plus
CG6808-PB 375 CG6808-PB 9..364 10..338 366 28.5 Plus
CG6808-PA 375 CG6808-PA 9..364 10..338 366 28.5 Plus
CG44002-PA 345 CG44002-PA 1..332 6..333 358 29.7 Plus
CG15436-PA 346 CG15436-PA 3..286 9..333 339 27.1 Plus
CG15436-PA 346 CG15436-PA 91..264 164..339 330 34.5 Plus
CG4820-PB 362 CG4820-PB 5..350 11..343 330 28.1 Plus
CG4936-PA 521 CG4936-PA 360..501 201..344 322 42.4 Plus
Odj-PA 430 CG7357-PA 5..350 11..341 317 28.1 Plus
CG14667-PB 337 CG14667-PB 6..331 10..349 312 25.6 Plus
CG6689-PA 613 CG6689-PA 167..607 11..347 308 21.1 Plus
Clamp-PA 561 CG1832-PA 346..490 175..331 307 38.9 Plus
Clamp-PB 566 CG1832-PB 359..495 195..331 307 40.9 Plus
Kr-PB 502 CG3340-PB 219..352 198..331 305 41.8 Plus
Kr-PA 502 CG3340-PA 219..352 198..331 305 41.8 Plus
CG6813-PD 256 CG6813-PD 6..250 11..307 303 27.4 Plus
CG6813-PB 256 CG6813-PB 6..250 11..307 303 27.4 Plus
CG17801-PB 381 CG17801-PB 31..370 35..339 302 28.4 Plus
ZIPIC-PA 457 CG7928-PA 183..429 103..339 299 29.6 Plus
CG6654-PA 639 CG6654-PA 428..578 189..339 298 37.1 Plus
CG2202-PA 889 CG2202-PA 472..736 53..339 297 27.2 Plus
Meics-PB 571 CG8474-PB 342..474 199..331 292 38.3 Plus
Meics-PA 583 CG8474-PA 354..486 199..331 292 38.3 Plus
CTCF-PA 818 CG8591-PA 206..453 103..331 290 29.5 Plus
crol-PD 878 CG14938-PD 277..411 201..335 290 39.3 Plus
crol-PF 907 CG14938-PF 277..407 201..331 290 39.7 Plus
CG17328-PB 382 CG17328-PB 59..246 147..331 287 33 Plus
CG17328-PA 413 CG17328-PA 90..277 147..331 287 33 Plus
crol-PC 756 CG14938-PC 200..345 190..335 287 36.3 Plus
crol-PB 891 CG14938-PB 406..551 190..335 287 36.3 Plus
crol-PB 891 CG14938-PB 277..413 201..337 285 37.2 Plus
Meics-PB 571 CG8474-PB 18..370 8..339 282 23.1 Plus
CG30431-PA 418 CG30431-PA 25..398 25..331 281 27.5 Plus
Meics-PA 583 CG8474-PA 18..382 8..339 277 23.7 Plus
crol-PC 756 CG14938-PC 241..371 203..333 277 37.4 Plus
crol-PB 891 CG14938-PB 447..577 203..333 277 37.4 Plus
CG6654-PA 639 CG6654-PA 447..598 179..331 276 34 Plus
Clamp-PA 561 CG1832-PA 386..518 199..331 266 34.6 Plus
Clamp-PB 566 CG1832-PB 391..523 199..331 266 34.6 Plus
crol-PD 878 CG14938-PD 240..380 192..332 266 35.5 Plus
crol-PB 891 CG14938-PB 240..380 192..332 266 35.5 Plus
crol-PD 878 CG14938-PD 391..524 203..336 265 33.6 Plus
crol-PF 907 CG14938-PF 420..553 203..336 265 33.6 Plus
crol-PD 878 CG14938-PD 363..493 203..333 264 35.9 Plus
crol-PC 756 CG14938-PC 269..402 203..336 264 32.8 Plus
crol-PB 891 CG14938-PB 475..608 203..336 264 32.8 Plus
crol-PF 907 CG14938-PF 240..385 192..337 263 33.6 Plus
crol-PF 907 CG14938-PF 293..440 187..335 260 34 Plus
crol-PB 891 CG14938-PB 293..435 187..331 259 34.5 Plus
crol-PD 878 CG14938-PD 293..439 187..335 255 34.2 Plus
crol-PC 756 CG14938-PC 185..317 203..335 254 36.1 Plus
crol-PB 891 CG14938-PB 333..467 201..335 254 33.3 Plus
crol-PB 891 CG14938-PB 391..523 203..335 254 36.1 Plus
crol-PD 878 CG14938-PD 333..467 201..335 252 34.8 Plus
crol-PD 878 CG14938-PD 220..355 200..335 251 34.6 Plus
crol-PF 907 CG14938-PF 220..355 200..335 251 34.6 Plus
crol-PB 891 CG14938-PB 220..355 200..335 251 34.6 Plus
Meics-PB 571 CG8474-PB 370..521 199..351 245 31 Plus
Meics-PA 583 CG8474-PA 382..533 199..351 245 31 Plus
Meics-PB 571 CG8474-PB 395..543 196..338 244 33.6 Plus
Meics-PA 583 CG8474-PA 407..555 196..338 244 33.6 Plus
crol-PF 907 CG14938-PF 363..496 203..335 243 36.6 Plus
crol-PC 756 CG14938-PC 295..425 201..331 240 31.3 Plus
crol-PB 891 CG14938-PB 363..495 203..335 240 34.6 Plus
crol-PB 891 CG14938-PB 501..631 201..331 240 31.3 Plus
crol-PD 878 CG14938-PD 447..588 203..343 239 31.7 Plus
crol-PF 907 CG14938-PF 476..617 203..343 239 31.7 Plus
crol-PC 756 CG14938-PC 325..466 203..343 239 31.7 Plus
crol-PB 891 CG14938-PB 531..672 203..343 239 31.7 Plus
crol-PD 878 CG14938-PD 419..547 203..331 237 31 Plus
crol-PF 907 CG14938-PF 448..576 203..331 237 31 Plus
Clamp-PB 566 CG1832-PB 296..469 175..333 225 31.1 Plus
Clamp-PA 561 CG1832-PA 296..464 175..333 222 31.4 Plus
CG6654-PA 639 CG6654-PA 385..522 203..339 222 31.9 Plus
Kr-PB 502 CG3340-PB 219..304 254..339 216 45.3 Plus
Kr-PA 502 CG3340-PA 219..304 254..339 216 45.3 Plus
CG9215-PA 560 CG9215-PA 328..441 196..309 215 34.2 Plus
crol-PD 878 CG14938-PD 503..640 203..335 213 34.1 Plus
crol-PF 907 CG14938-PF 532..669 203..335 213 34.1 Plus
crol-PC 756 CG14938-PC 381..518 203..335 213 34.1 Plus
Kr-PB 502 CG3340-PB 238..352 189..303 211 33 Plus
Kr-PA 502 CG3340-PA 238..352 189..303 211 33 Plus
CG6654-PA 639 CG6654-PA 493..602 198..307 210 33.6 Plus
Clamp-PA 561 CG1832-PA 404..522 189..307 204 31.1 Plus
Clamp-PB 566 CG1832-PB 409..527 189..307 204 31.1 Plus
CG44002-PA 345 CG44002-PA 2..282 88..339 202 23 Plus
crol-PD 878 CG14938-PD 475..613 203..336 202 30.2 Plus
crol-PF 907 CG14938-PF 504..642 203..336 202 30.2 Plus
crol-PC 756 CG14938-PC 353..491 203..336 202 30.2 Plus
Clamp-PA 561 CG1832-PA 351..442 248..339 197 37 Plus
Clamp-PB 566 CG1832-PB 363..447 255..339 195 40 Plus
CG2202-PA 889 CG2202-PA 415..646 147..333 192 28.2 Plus
CTCF-PA 818 CG8591-PA 393..568 187..331 190 26.7 Plus
crol-PC 756 CG14938-PC 179..261 253..335 189 39.8 Plus
CG15436-PA 346 CG15436-PA 234..342 197..305 186 32.1 Plus
CG30431-PA 418 CG30431-PA 278..400 188..305 182 30.1 Plus
CG17328-PB 382 CG17328-PB 100..192 241..333 181 36.6 Plus
CG17328-PA 413 CG17328-PA 131..223 241..333 181 36.6 Plus
CG9215-PA 560 CG9215-PA 64..387 53..339 169 22.3 Plus
CG4424-PA 345 CG4424-PA 189..269 259..339 160 35.8 Plus
CTCF-PA 818 CG8591-PA 496..609 203..307 157 29.8 Plus
CG14711-PA 377 CG14711-PA 280..373 199..283 154 36.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10370-PA 703 GI10370-PA 1..384 6..342 725 40.9 Plus
Dmoj\GI10369-PA 436 GI10369-PA 4..408 2..343 671 38.8 Plus
Dmoj\GI22393-PA 359 GI22393-PA 1..347 6..343 599 37 Plus
Dmoj\GI22394-PA 371 GI22394-PA 1..336 6..344 593 38.7 Plus
Dmoj\GI10370-PA 703 GI10370-PA 412..694 65..343 549 41.1 Plus
Dmoj\GI23401-PA 372 GI23401-PA 5..354 11..342 451 31.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12135-PA 433 GL12135-PA 12..415 10..350 710 40.1 Plus
Dper\GL12478-PA 401 GL12478-PA 1..334 6..344 586 37.2 Plus
Dper\GL12476-PA 333 GL12476-PA 5..326 10..343 563 37.2 Plus
Dper\GL22112-PA 374 GL22112-PA 134..364 142..346 419 40 Plus
Dper\GL23638-PA 343 GL23638-PA 2..323 35..340 404 33.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22043-PA 398 GA22043-PA 2..380 35..350 664 40.4 Plus
Dpse\GA20857-PA 401 GA20857-PA 1..334 6..344 591 37.5 Plus
Dpse\GA11182-PA 333 GA11182-PA 5..326 10..343 563 37.2 Plus
Dpse\GA14725-PA 375 GA14725-PA 10..355 11..340 432 32.6 Plus
Dpse\GA13193-PA 374 GA13193-PA 38..364 35..346 419 33.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26322-PA 346 GM26322-PA 1..340 10..350 1651 92.1 Plus
Dsec\GM23759-PA 399 GM23759-PA 1..335 6..344 610 37.4 Plus
Dsec\GM23758-PA 312 GM23758-PA 1..309 6..343 554 34.5 Plus
Dsec\GM26321-PA 154 GM26321-PA 3..131 217..345 494 64.3 Plus
Dsec\GM23960-PA 412 GM23960-PA 5..398 11..337 453 32.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20849-PA 397 GD20849-PA 43..391 1..350 1672 90.6 Plus
Dsim\GD18570-PA 399 GD18570-PA 1..335 6..344 606 37.1 Plus
Dsim\GD18569-PA 312 GD18569-PA 1..312 6..346 564 34.8 Plus
Dsim\GD18769-PA 413 GD18769-PA 5..399 11..337 449 32.2 Plus
Dsim\GD20673-PA 394 GD20673-PA 7..336 10..344 435 30.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24586-PA 743 GJ24586-PA 1..387 6..343 689 39.5 Plus
Dvir\GJ24585-PA 436 GJ24585-PA 4..408 2..343 668 36 Plus
Dvir\GJ22678-PA 361 GJ22678-PA 1..349 6..343 650 39.3 Plus
Dvir\GJ24586-PA 743 GJ24586-PA 391..734 43..343 610 39.4 Plus
Dvir\GJ22679-PA 375 GJ22679-PA 1..342 6..344 547 36.5 Plus
Dvir\GJ23093-PA 378 GJ23093-PA 5..360 11..342 449 31.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11271-PA 440 GK11271-PA 13..420 11..345 700 39.2 Plus
Dwil\GK11270-PA 359 GK11270-PA 3..348 10..341 699 42.7 Plus
Dwil\GK11276-PA 396 GK11276-PA 1..366 6..344 596 36.2 Plus
Dwil\GK11273-PA 347 GK11273-PA 6..337 11..344 538 37.5 Plus
Dwil\GK11272-PA 402 GK11272-PA 1..378 6..346 425 32.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24832-PA 344 GE24832-PA 1..344 6..350 1528 85.2 Plus
Dyak\GE24830-PA 418 GE24830-PA 12..395 10..345 735 40.7 Plus
Dyak\GE25903-PA 398 GE25903-PA 1..335 6..344 610 37.8 Plus
Dyak\GE25902-PA 306 GE25902-PA 1..297 6..342 522 35 Plus
Dyak\GE24185-PA 381 GE24185-PA 3..367 7..342 441 31.5 Plus

RT11843.hyp Sequence

Translation from 0 to 1055

> RT11843.hyp
FIGSKMEGKVCRTCGKRTNAERSLNIFEKRNQTTLEHIKLLTGAVLKNCS
TLPNRLCASCQTCLQQAISFRERCLEVQRELLHSQDDEDFLRICQESPKS
VLEQEELELDLAEISIEVERLDDLNEGPIQSSGFKVEDILNESKINEDEP
NNEDDIDYSEMDYLIYESDTEVDAKQELKSDSENPKKRRNRRNPRDSNRT
FFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIRK
HTGEKPFKCRHCSRSFSDYSTRLKHERTHTNERPFVCKECNNAFTTSYIL
KNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRRNMQKADTIFDK
P*

RT11843.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
ranshi-PA 346 CG9793-PA 1..346 6..351 1869 100 Plus
M1BP-PA 418 CG9797-PA 13..395 11..345 758 39.8 Plus
CG8159-PB 399 CG8159-PB 5..335 10..344 646 39 Plus
CG11762-PA 312 CG11762-PA 5..309 10..343 599 36.1 Plus
CG18764-PA 409 CG18764-PA 5..402 11..347 491 33.7 Plus