Clone RT11906 Report

Search the DGRC for RT11906

Clone and Library Details

Library:RT
Tissue Source:D melanogaster pooled RNA
Created by:
Date Registered:2006-04-14
Comments:TA cloning vector from Invitrogen
Original Plate Number:119
Well:6
Vector:pCR2.1
Associated Gene/TranscriptCG32006-RA
Protein status:RT11906.pep: Imported from assembly
Sequenced Size:1329

Clone Sequence Records

RT11906.complete Sequence

1329 bp assembled on 2011-07-27

GenBank Submission: BT128764.1

> RT11906.complete
ATGTCATACCACTTTACTTCTTCGGCAAAACAGAATGTTACATTACAATC
ATGTAAGGAAGAGAATTTATTATCACTAGAAGAGGAGGACTCCGACGAGG
AACGCGAGCTAACCAACCTTAATTGGCTTTTGAGAAATCAAAATTTAACT
TGGCCGAAAACCATTGATTACAACCCAACCGAAATTTTAAATTCGAAAAG
GAACACAGAACCAACTCACAAGTCAAGAGTCCATGATAAACAAATCAAAA
TGTTTTATTCTACTCGTGAAAACACAGATAAAATATCACATATAATTTTA
GAGGCTAATGCGCAAAAATCTATAACAAAGAGACCAACTGCATCAGAACG
CTTTGAAATTTTCGTCAATAAAATCAAAAGAGACTTAACAGAATATGAAA
AGTTGGCTAGCAAGTATGAAACCGACGTGACCGAGAAACCGCCTTTTAAT
TATTCACATATAATAGGAATGGCTATGTTACAAAATGGGCGAATAACTTT
ACAACAATTATGTTCTTGGATAGAGGCCAAGTTTGCATTTTTTAGAGTTC
GAAAGAAATGGAATAATTCCATTAGGCATAACTTATCATTACACCATTGC
TTTCGTAACCGAAAAAGAGAAGAAAGGGGAAAAGGTGGTTACTGGGAGCT
GGGGGTCGACCCAAAAAAGTGTGACCGGAAACGAATTCGAAATAGGAAAA
TTTTTCATCCAACGCAAAATCAAACTGCTAAGTTACAGTATGAACACTTA
ACAGAAATACAACAAGCAAAATCTGCTCGAAAAAATCATTCAAGACACAT
TAAAAAATCGAAGACAAGTAGTCTTCCAGAAACATCTGAAGCAAATATAT
TTAATGTCGTGCCCCATAAAAAACACAATATAGCTGATGAAAATGATGGG
CAACGTCAGTTACAAACAATAAATAAAGATGACATTTTAAAAAAGAAGTC
TGAGCTTGACACTATTGTATCAAGTACTGAATCATTTTTAACAGAATCTC
AAAACTTAAACTGTTTTAATTCGCACAAGACGGATACTACCAACACCCCC
ATTTCTGCAGAAAAGAATTTCTGCACATTCAATAATTTCTATTCCGAAAT
GACACCCGTGCTGGCTTCAAATTCAAATATCGTGGAAGACCAAAATGTAT
CAACTGATGTATCCTGGCCTAGCCATCCATGCAACATAACAATTAATTAT
GATTACACTAACTTTCAACCAATAGTAGATAGCATTGCTGAGCAGTTCCA
ATGCCTGCATGATAGCGCTGGGTATGATCGAAACGACGATATCTTAGAAA
ACCTTCTTGATGTTTGTGTTACGCCTTAT

RT11906.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr4 1351717 chr4 173073..173554 565..1046 2410 100 Plus
chr4 1351717 chr4 172385..172764 1..380 1900 100 Plus
chr4 1351717 chr4 173618..173899 1048..1329 1410 100 Plus
chr4 1351717 chr4 172827..173012 379..564 930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 152439..152920 565..1046 2410 100 Plus
4 1348131 4 151751..152130 1..380 1900 100 Plus
4 1348131 4 152984..153265 1048..1329 1410 100 Plus
4 1348131 4 152193..152378 379..564 930 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
4 1331231 4 152439..152920 565..1046 2410 100 Plus
4 1331231 4 151751..152130 1..380 1900 100 Plus
4 1331231 4 152984..153265 1048..1329 1410 100 Plus
4 1331231 4 152193..152378 379..564 930 100 Plus
Blast to na_te.dros performed 2019-03-15 10:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1093..1318 897..663 133 56.7 Minus
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 4067..4134 233..297 117 66.2 Plus

RT11906.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:51:32 Download gff for RT11906.complete
Subject Subject Range Query Range Percent Splice Strand
chr4 172385..172764 1..380 100 -> Plus
chr4 172829..173012 381..564 100 -> Plus
chr4 173073..173555 565..1047 99 -> Plus
chr4 173618..173899 1048..1329 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-07-27 09:25:23 Download gff for RT11906.complete
Subject Subject Range Query Range Percent Splice Strand
CG32006-RA 1..1329 1..1329 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:26:16 Download gff for RT11906.complete
Subject Subject Range Query Range Percent Splice Strand
CG32006-RA 1..1329 1..1329 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:12:58 Download gff for RT11906.complete
Subject Subject Range Query Range Percent Splice Strand
CG32006-RA 1..1329 1..1329 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-27 09:25:22 Download gff for RT11906.complete
Subject Subject Range Query Range Percent Splice Strand
CG32006-RA 80..1408 1..1329 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:26:16 Download gff for RT11906.complete
Subject Subject Range Query Range Percent Splice Strand
CG32006-RA 83..1411 1..1329 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:58 Download gff for RT11906.complete
Subject Subject Range Query Range Percent Splice Strand
CG32006-RA 83..1411 1..1329 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:32 Download gff for RT11906.complete
Subject Subject Range Query Range Percent Splice Strand
4 151751..152130 1..380 100 -> Plus
4 152195..152378 381..564 100 -> Plus
4 152439..152921 565..1047 99 -> Plus
4 152984..153265 1048..1329 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:32 Download gff for RT11906.complete
Subject Subject Range Query Range Percent Splice Strand
4 151751..152130 1..380 100 -> Plus
4 152195..152378 381..564 100 -> Plus
4 152439..152921 565..1047 99 -> Plus
4 152984..153265 1048..1329 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:51:32 Download gff for RT11906.complete
Subject Subject Range Query Range Percent Splice Strand
4 151751..152130 1..380 100 -> Plus
4 152195..152378 381..564 100 -> Plus
4 152439..152921 565..1047 99 -> Plus
4 152984..153265 1048..1329 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:26:16 Download gff for RT11906.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 172377..172756 1..380 100 -> Plus
arm_4 172821..173004 381..564 100 -> Plus
arm_4 173065..173547 565..1047 99 -> Plus
arm_4 173610..173891 1048..1329 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:09:36 Download gff for RT11906.complete
Subject Subject Range Query Range Percent Splice Strand
4 151751..152130 1..380 100 -> Plus
4 152195..152378 381..564 100 -> Plus
4 152439..152921 565..1047 99 -> Plus
4 152984..153265 1048..1329 100   Plus

RT11906.pep Sequence

Translation from 0 to 1329

> RT11906.pep
MSYHFTSSAKQNVTLQSCKEENLLSLEEEDSDEERELTNLNWLLRNQNLT
WPKTIDYNPTEILNSKRNTEPTHKSRVHDKQIKMFYSTRENTDKISHIIL
EANAQKSITKRPTASERFEIFVNKIKRDLTEYEKLASKYETDVTEKPPFN
YSHIIGMAMLQNGRITLQQLCSWIEAKFAFFRVRKKWNNSIRHNLSLHHC
FRNRKREERGKGGYWELGVDPKKCDRKRIRNRKIFHPTQNQTAKLQYEHL
TEIQQAKSARKNHSRHIKKSKTSSLPETSEANIFNVVPHKKHNIADENDG
QRQLQTINKDDILKKKSELDTIVSSTESFLTESQNLNCFNSHKTDTTNTP
ISAEKNFCTFNNFYSEMTPVLASNSNIVEDQNVSTDVSWPSHPCNITINY
DYTNFQPIVDSIAEQFQCLHDSAGYDRNDDILENLLDVCVTPY

RT11906.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22834-PA 449 GF22834-PA 24..449 27..443 816 43.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16378-PA 456 GG16378-PA 1..456 1..443 1771 76.8 Plus
Dere\GG24971-PA 323 GG24971-PA 119..197 144..217 162 41.8 Plus
Dere\GG18013-PA 250 GG18013-PA 50..132 146..225 161 44.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23950-PA 490 GH23950-PA 2..254 5..241 734 57.1 Plus
Dgri\GH12162-PA 368 GH12162-PA 93..171 146..221 162 44.4 Plus
Dgri\GH11193-PA 340 GH11193-PA 124..204 144..221 161 42.2 Plus
Dgri\GH18036-PA 294 GH18036-PA 12..109 145..235 150 37 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32006-PA 443 CG32006-PA 1..443 1..443 2354 100 Plus
FoxL1-PB 365 CG1132-PB 90..173 145..217 157 44 Plus
FoxL1-PA 365 CG1132-PA 90..173 145..217 157 44 Plus
fd19B-PA 260 CG9571-PA 58..134 146..217 156 45.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14030-PA 483 GI14030-PA 26..243 27..233 730 66.5 Plus
Dmoj\GI10909-PA 413 GI10909-PA 92..174 146..225 164 43.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18393-PA 455 GL18393-PA 23..455 27..443 1064 53.4 Plus
Dper\GL15821-PA 347 GL15821-PA 76..158 146..225 164 44.7 Plus
Dper\GL18682-PA 342 GL18682-PA 130..208 144..217 159 41.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23375-PA 338 GA23375-PA 74..158 144..225 164 43.7 Plus
Dpse\GA14117-PA 347 GA14117-PA 135..213 144..217 159 41.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23241-PA 442 GM23241-PA 1..442 1..443 2099 89.2 Plus
Dsec\GM22695-PA 256 GM22695-PA 58..140 146..225 162 44.7 Plus
Dsec\GM18442-PA 322 GM18442-PA 118..196 144..217 161 41.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15555-PA 254 GD15555-PA 56..138 146..225 163 44.7 Plus
Dsim\GD23260-PA 322 GD23260-PA 118..198 144..221 159 42.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19567-PA 477 GJ19567-PA 36..477 37..443 847 45.3 Plus
Dvir\GJ18555-PA 394 GJ18555-PA 80..162 146..225 163 44.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13616-PA 523 GK13616-PA 1..242 26..240 782 60.5 Plus
Dwil\GK13616-PA 523 GK13616-PA 375..523 303..443 194 39.5 Plus
Dwil\GK25667-PA 343 GK25667-PA 79..161 146..225 167 44.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14537-PA 443 GE14537-PA 1..443 1..443 1761 76.8 Plus
Dyak\GE17344-PA 269 GE17344-PA 54..136 146..225 166 44.7 Plus

RT11906.hyp Sequence

Translation from 1 to 1329

> RT11906.hyp
MSYHFTSSAKQNVTLQSCKEENLLSLEEEDSDEERELTNLNWLLRNQNLT
WPKTIDYNPTEILNSKRNTEPTHKSRVHDKQIKMFYSTRENTDKISHIIL
EANAQKSITKRPTASERFEIFVNKIKRDLTEYEKLASKYETDVTEKPPFN
YSHIIGMAMLQNGRITLQQLCSWIEAKFAFFRVRKKWNNSIRHNLSLHHC
FRNRKREERGKGGYWELGVDPKKCDRKRIRNRKIFHPTQNQTAKLQYEHL
TEIQQAKSARKNHSRHIKKSKTSSLPETSEANIFNVVPHKKHNIADENDG
QRQLQTINKDDILKKKSELDTIVSSTESFLTESQNLNCFNSHKTDTTNTP
ISAEKNFCTFNNFYSEMTPVLASNSNIVEDQNVSTDVSWPSHPCNITINY
DYTNFQPIVDSIAEQFQCLHDSAGYDRNDDILENLLDVCVTPY

RT11906.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG32006-PA 443 CG32006-PA 1..443 1..443 2354 100 Plus
fd64A-PB 365 CG1132-PB 90..173 145..217 157 44 Plus
fd64A-PA 365 CG1132-PA 90..173 145..217 157 44 Plus
fd19B-PA 260 CG9571-PA 58..134 146..217 156 45.5 Plus

RT11906.hyp2 Sequence

Translation from 1 to 1331

> RT11906.hyp2
MSYHFTSSAKQNVTLQSCKEENLLSLEEEDSDEERELTNLNWLLRNQNLT
WPKTIDYNPTEILNSKRNTEPTHKSRVHDKQIKMFYSTRENTDKISHIIL
EANAQKSITKRPTASERFEIFVNKIKRDLTEYEKLASKYETDVTEKPPFN
YSHIIGMAMLQNGRITLQQLCSWIEAKFAFFRVRKKWNNSIRHNLSLHHC
FRNRKREERGKGGYWELGVDPKKCDRKRIRNRKIFHPTQNQTAKLQYEHL
TEIQQAKSARKNHSRHIKKSKTSSLPETSEANIFNVVPHKKHNIADENDG
QRQLQTINKDDILKKKSELDTIVSSTESFLTESQNLNCFNSHKTDTTNTP
ISAEKNFCTFNNFYSEMTPVLASNSNIVEDQNVSTDVSWPSHPCNITINY
DYTNFQPIVDSIAEQFQCLHDSAGYDRNDDILENLLDVCVTPY

RT11906.hyp2 Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32006-PA 443 CG32006-PA 1..443 1..443 2354 100 Plus
FoxL1-PB 365 CG1132-PB 90..173 145..217 157 44 Plus
FoxL1-PA 365 CG1132-PA 90..173 145..217 157 44 Plus
fd19B-PA 260 CG9571-PA 58..134 146..217 156 45.5 Plus