BDGP Sequence Production Resources |
Search the DGRC for RT11906
Library: | RT |
Tissue Source: | D melanogaster pooled RNA |
Created by: | |
Date Registered: | 2006-04-14 |
Comments: | TA cloning vector from Invitrogen |
Original Plate Number: | 119 |
Well: | 6 |
Vector: | pCR2.1 |
Associated Gene/Transcript | CG32006-RA |
Protein status: | RT11906.pep: Imported from assembly |
Sequenced Size: | 1329 |
1329 bp assembled on 2011-07-27
GenBank Submission: BT128764.1
> RT11906.complete ATGTCATACCACTTTACTTCTTCGGCAAAACAGAATGTTACATTACAATC ATGTAAGGAAGAGAATTTATTATCACTAGAAGAGGAGGACTCCGACGAGG AACGCGAGCTAACCAACCTTAATTGGCTTTTGAGAAATCAAAATTTAACT TGGCCGAAAACCATTGATTACAACCCAACCGAAATTTTAAATTCGAAAAG GAACACAGAACCAACTCACAAGTCAAGAGTCCATGATAAACAAATCAAAA TGTTTTATTCTACTCGTGAAAACACAGATAAAATATCACATATAATTTTA GAGGCTAATGCGCAAAAATCTATAACAAAGAGACCAACTGCATCAGAACG CTTTGAAATTTTCGTCAATAAAATCAAAAGAGACTTAACAGAATATGAAA AGTTGGCTAGCAAGTATGAAACCGACGTGACCGAGAAACCGCCTTTTAAT TATTCACATATAATAGGAATGGCTATGTTACAAAATGGGCGAATAACTTT ACAACAATTATGTTCTTGGATAGAGGCCAAGTTTGCATTTTTTAGAGTTC GAAAGAAATGGAATAATTCCATTAGGCATAACTTATCATTACACCATTGC TTTCGTAACCGAAAAAGAGAAGAAAGGGGAAAAGGTGGTTACTGGGAGCT GGGGGTCGACCCAAAAAAGTGTGACCGGAAACGAATTCGAAATAGGAAAA TTTTTCATCCAACGCAAAATCAAACTGCTAAGTTACAGTATGAACACTTA ACAGAAATACAACAAGCAAAATCTGCTCGAAAAAATCATTCAAGACACAT TAAAAAATCGAAGACAAGTAGTCTTCCAGAAACATCTGAAGCAAATATAT TTAATGTCGTGCCCCATAAAAAACACAATATAGCTGATGAAAATGATGGG CAACGTCAGTTACAAACAATAAATAAAGATGACATTTTAAAAAAGAAGTC TGAGCTTGACACTATTGTATCAAGTACTGAATCATTTTTAACAGAATCTC AAAACTTAAACTGTTTTAATTCGCACAAGACGGATACTACCAACACCCCC ATTTCTGCAGAAAAGAATTTCTGCACATTCAATAATTTCTATTCCGAAAT GACACCCGTGCTGGCTTCAAATTCAAATATCGTGGAAGACCAAAATGTAT CAACTGATGTATCCTGGCCTAGCCATCCATGCAACATAACAATTAATTAT GATTACACTAACTTTCAACCAATAGTAGATAGCATTGCTGAGCAGTTCCA ATGCCTGCATGATAGCGCTGGGTATGATCGAAACGACGATATCTTAGAAA ACCTTCTTGATGTTTGTGTTACGCCTTAT
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr4 | 1351717 | chr4 | 173073..173554 | 565..1046 | 2410 | 100 | Plus |
chr4 | 1351717 | chr4 | 172385..172764 | 1..380 | 1900 | 100 | Plus |
chr4 | 1351717 | chr4 | 173618..173899 | 1048..1329 | 1410 | 100 | Plus |
chr4 | 1351717 | chr4 | 172827..173012 | 379..564 | 930 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
4 | 1348131 | 4 | 152439..152920 | 565..1046 | 2410 | 100 | Plus |
4 | 1348131 | 4 | 151751..152130 | 1..380 | 1900 | 100 | Plus |
4 | 1348131 | 4 | 152984..153265 | 1048..1329 | 1410 | 100 | Plus |
4 | 1348131 | 4 | 152193..152378 | 379..564 | 930 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
4 | 1331231 | 4 | 152439..152920 | 565..1046 | 2410 | 100 | Plus |
4 | 1331231 | 4 | 151751..152130 | 1..380 | 1900 | 100 | Plus |
4 | 1331231 | 4 | 152984..153265 | 1048..1329 | 1410 | 100 | Plus |
4 | 1331231 | 4 | 152193..152378 | 379..564 | 930 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1093..1318 | 897..663 | 133 | 56.7 | Minus |
Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 4067..4134 | 233..297 | 117 | 66.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr4 | 172385..172764 | 1..380 | 100 | -> | Plus |
chr4 | 172829..173012 | 381..564 | 100 | -> | Plus |
chr4 | 173073..173555 | 565..1047 | 99 | -> | Plus |
chr4 | 173618..173899 | 1048..1329 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32006-RA | 1..1329 | 1..1329 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32006-RA | 1..1329 | 1..1329 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32006-RA | 1..1329 | 1..1329 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32006-RA | 80..1408 | 1..1329 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32006-RA | 83..1411 | 1..1329 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32006-RA | 83..1411 | 1..1329 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 151751..152130 | 1..380 | 100 | -> | Plus |
4 | 152195..152378 | 381..564 | 100 | -> | Plus |
4 | 152439..152921 | 565..1047 | 99 | -> | Plus |
4 | 152984..153265 | 1048..1329 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 151751..152130 | 1..380 | 100 | -> | Plus |
4 | 152195..152378 | 381..564 | 100 | -> | Plus |
4 | 152439..152921 | 565..1047 | 99 | -> | Plus |
4 | 152984..153265 | 1048..1329 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 151751..152130 | 1..380 | 100 | -> | Plus |
4 | 152195..152378 | 381..564 | 100 | -> | Plus |
4 | 152439..152921 | 565..1047 | 99 | -> | Plus |
4 | 152984..153265 | 1048..1329 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_4 | 172377..172756 | 1..380 | 100 | -> | Plus |
arm_4 | 172821..173004 | 381..564 | 100 | -> | Plus |
arm_4 | 173065..173547 | 565..1047 | 99 | -> | Plus |
arm_4 | 173610..173891 | 1048..1329 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 151751..152130 | 1..380 | 100 | -> | Plus |
4 | 152195..152378 | 381..564 | 100 | -> | Plus |
4 | 152439..152921 | 565..1047 | 99 | -> | Plus |
4 | 152984..153265 | 1048..1329 | 100 | Plus |
Translation from 0 to 1329
> RT11906.pep MSYHFTSSAKQNVTLQSCKEENLLSLEEEDSDEERELTNLNWLLRNQNLT WPKTIDYNPTEILNSKRNTEPTHKSRVHDKQIKMFYSTRENTDKISHIIL EANAQKSITKRPTASERFEIFVNKIKRDLTEYEKLASKYETDVTEKPPFN YSHIIGMAMLQNGRITLQQLCSWIEAKFAFFRVRKKWNNSIRHNLSLHHC FRNRKREERGKGGYWELGVDPKKCDRKRIRNRKIFHPTQNQTAKLQYEHL TEIQQAKSARKNHSRHIKKSKTSSLPETSEANIFNVVPHKKHNIADENDG QRQLQTINKDDILKKKSELDTIVSSTESFLTESQNLNCFNSHKTDTTNTP ISAEKNFCTFNNFYSEMTPVLASNSNIVEDQNVSTDVSWPSHPCNITINY DYTNFQPIVDSIAEQFQCLHDSAGYDRNDDILENLLDVCVTPY
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22834-PA | 449 | GF22834-PA | 24..449 | 27..443 | 816 | 43.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16378-PA | 456 | GG16378-PA | 1..456 | 1..443 | 1771 | 76.8 | Plus |
Dere\GG24971-PA | 323 | GG24971-PA | 119..197 | 144..217 | 162 | 41.8 | Plus |
Dere\GG18013-PA | 250 | GG18013-PA | 50..132 | 146..225 | 161 | 44.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23950-PA | 490 | GH23950-PA | 2..254 | 5..241 | 734 | 57.1 | Plus |
Dgri\GH12162-PA | 368 | GH12162-PA | 93..171 | 146..221 | 162 | 44.4 | Plus |
Dgri\GH11193-PA | 340 | GH11193-PA | 124..204 | 144..221 | 161 | 42.2 | Plus |
Dgri\GH18036-PA | 294 | GH18036-PA | 12..109 | 145..235 | 150 | 37 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG32006-PA | 443 | CG32006-PA | 1..443 | 1..443 | 2354 | 100 | Plus |
FoxL1-PB | 365 | CG1132-PB | 90..173 | 145..217 | 157 | 44 | Plus |
FoxL1-PA | 365 | CG1132-PA | 90..173 | 145..217 | 157 | 44 | Plus |
fd19B-PA | 260 | CG9571-PA | 58..134 | 146..217 | 156 | 45.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14030-PA | 483 | GI14030-PA | 26..243 | 27..233 | 730 | 66.5 | Plus |
Dmoj\GI10909-PA | 413 | GI10909-PA | 92..174 | 146..225 | 164 | 43.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18393-PA | 455 | GL18393-PA | 23..455 | 27..443 | 1064 | 53.4 | Plus |
Dper\GL15821-PA | 347 | GL15821-PA | 76..158 | 146..225 | 164 | 44.7 | Plus |
Dper\GL18682-PA | 342 | GL18682-PA | 130..208 | 144..217 | 159 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23375-PA | 338 | GA23375-PA | 74..158 | 144..225 | 164 | 43.7 | Plus |
Dpse\GA14117-PA | 347 | GA14117-PA | 135..213 | 144..217 | 159 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23241-PA | 442 | GM23241-PA | 1..442 | 1..443 | 2099 | 89.2 | Plus |
Dsec\GM22695-PA | 256 | GM22695-PA | 58..140 | 146..225 | 162 | 44.7 | Plus |
Dsec\GM18442-PA | 322 | GM18442-PA | 118..196 | 144..217 | 161 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15555-PA | 254 | GD15555-PA | 56..138 | 146..225 | 163 | 44.7 | Plus |
Dsim\GD23260-PA | 322 | GD23260-PA | 118..198 | 144..221 | 159 | 42.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19567-PA | 477 | GJ19567-PA | 36..477 | 37..443 | 847 | 45.3 | Plus |
Dvir\GJ18555-PA | 394 | GJ18555-PA | 80..162 | 146..225 | 163 | 44.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13616-PA | 523 | GK13616-PA | 1..242 | 26..240 | 782 | 60.5 | Plus |
Dwil\GK13616-PA | 523 | GK13616-PA | 375..523 | 303..443 | 194 | 39.5 | Plus |
Dwil\GK25667-PA | 343 | GK25667-PA | 79..161 | 146..225 | 167 | 44.7 | Plus |
Translation from 1 to 1329
> RT11906.hyp MSYHFTSSAKQNVTLQSCKEENLLSLEEEDSDEERELTNLNWLLRNQNLT WPKTIDYNPTEILNSKRNTEPTHKSRVHDKQIKMFYSTRENTDKISHIIL EANAQKSITKRPTASERFEIFVNKIKRDLTEYEKLASKYETDVTEKPPFN YSHIIGMAMLQNGRITLQQLCSWIEAKFAFFRVRKKWNNSIRHNLSLHHC FRNRKREERGKGGYWELGVDPKKCDRKRIRNRKIFHPTQNQTAKLQYEHL TEIQQAKSARKNHSRHIKKSKTSSLPETSEANIFNVVPHKKHNIADENDG QRQLQTINKDDILKKKSELDTIVSSTESFLTESQNLNCFNSHKTDTTNTP ISAEKNFCTFNNFYSEMTPVLASNSNIVEDQNVSTDVSWPSHPCNITINY DYTNFQPIVDSIAEQFQCLHDSAGYDRNDDILENLLDVCVTPY
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG32006-PA | 443 | CG32006-PA | 1..443 | 1..443 | 2354 | 100 | Plus |
fd64A-PB | 365 | CG1132-PB | 90..173 | 145..217 | 157 | 44 | Plus |
fd64A-PA | 365 | CG1132-PA | 90..173 | 145..217 | 157 | 44 | Plus |
fd19B-PA | 260 | CG9571-PA | 58..134 | 146..217 | 156 | 45.5 | Plus |
Translation from 1 to 1331
> RT11906.hyp2 MSYHFTSSAKQNVTLQSCKEENLLSLEEEDSDEERELTNLNWLLRNQNLT WPKTIDYNPTEILNSKRNTEPTHKSRVHDKQIKMFYSTRENTDKISHIIL EANAQKSITKRPTASERFEIFVNKIKRDLTEYEKLASKYETDVTEKPPFN YSHIIGMAMLQNGRITLQQLCSWIEAKFAFFRVRKKWNNSIRHNLSLHHC FRNRKREERGKGGYWELGVDPKKCDRKRIRNRKIFHPTQNQTAKLQYEHL TEIQQAKSARKNHSRHIKKSKTSSLPETSEANIFNVVPHKKHNIADENDG QRQLQTINKDDILKKKSELDTIVSSTESFLTESQNLNCFNSHKTDTTNTP ISAEKNFCTFNNFYSEMTPVLASNSNIVEDQNVSTDVSWPSHPCNITINY DYTNFQPIVDSIAEQFQCLHDSAGYDRNDDILENLLDVCVTPY
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG32006-PA | 443 | CG32006-PA | 1..443 | 1..443 | 2354 | 100 | Plus |
FoxL1-PB | 365 | CG1132-PB | 90..173 | 145..217 | 157 | 44 | Plus |
FoxL1-PA | 365 | CG1132-PA | 90..173 | 145..217 | 157 | 44 | Plus |
fd19B-PA | 260 | CG9571-PA | 58..134 | 146..217 | 156 | 45.5 | Plus |