Clone SD01241 Report

Search the DGRC for SD01241

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:12
Well:41
Vector:pOT2
Associated Gene/TranscriptCG9328-RB
Protein status:SD01241.pep: gold
Preliminary Size:1895
Sequenced Size:1660

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9328 2001-01-01 Release 2 assignment
CG9328 2001-11-09 Blastp of sequenced clone
CG9328 2003-01-01 Sim4 clustering to Release 3
CG9328 2008-04-29 Release 5.5 accounting
CG9328 2008-08-15 Release 5.9 accounting
CG9328 2008-12-18 5.12 accounting

Clone Sequence Records

SD01241.complete Sequence

1660 bp (1660 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069770

> SD01241.complete
AGCGTGCGCGTACGGTGCTTTCCTCGCATGAAGAGTAAAAACAAATTAAA
TACCATTGTGGAATAACATCTCAGCGAACGAGTATACGTCGGAAACCGAT
TTGTCGCGCTAAGTAACACGAGATGCTTTTGGGATTCAAAAAAACCCATA
TTTATGTGATGATATATTAATGTAAACCCACTGTTTCGTTTACATTTTCG
TTTTTGAATGACTGGCTGCGGAAATAACTATAGATTCGCGAAAGTACACT
AAATCAGGCAGTAAAATCGGATTGGCAATCTTGGGAAAAAATCGAAGGAA
AAGAGACGCCAGCAGCTTCCTCGGATTGTTTTGTTGTTTTCAGTTCGTTA
GTGTGTGGCCGTTTTTCCGCCTGTGTTTGTGCAACAAAGTCAAAGTCGTC
GAAGCTGCTGCAAAAATACGTGAAATGCAAATTGTGAAAAAGTTGCAAAA
GCAACAACAGCAACTAGCAACAACCAACAACAACGCAACGACAACTATAA
CCGCAATCACACGGCCAACGCAACAATAACAACGGCAACAACAAAACGGC
TTCGCGTGTTTTAAAAAATTGCATTGCAAATTGCCGAGCAGCAACAACTA
AAACAATAGCAATAAAAAAAAAGGAAAATTGCGCGCCAAAAGCGAAAGAA
ACAAAAGGATTACACATAAACAAACCGAAGAAGCAGAAGCAGCTGAGCGA
AAGAGAGAGATAGCGAAAAATCAAAACAGAACAGGCAGAAATCCCTGTTT
ATCCACCTTCACCTCCGGCGACACCCCCCGTCGTGATACGGCATTCAGGC
ACAGTCTGGCGGACGCTGACAACGCGGCCGGAACGATGATGTCCATGACC
AGCTCCCCGCCGGCCACACCCACTGGCGTCCAGACGGACTCCGACGGGCT
GATCCTGCCTAAGAAGCTCATCAATCCCTGCATGGAGAACATCGATCGCA
AGGAGTTGCACCGGGAGCTCAAGTTCAATGCCAGAGTGGGAAAGAGCGTG
CTGAACCAGAAATCAGAATTGCAACGTGCCTACGACAAGCAAAAGGAGCG
GCATGCCGCGGCCGAGCAACATTCGCCGGATGCGGACATTGTCGGCGGGA
TTCCAGGACTGAAAGGAGAACTCGGGCGCGTGATCATGGAGCGGGCGCAG
AAGCATGAGGCGGCGGCTCAGAAGCAGGATCAGGAGGACGCCGAGGAGCG
GCAGTACGTGAATCCCGAGTATCTGAACGTGCGGGCCAAGCTGCGCACGG
CGCACGCCAACAATTAAGGAGCAGCCCACTCGGATACCCCTCATCCTGTA
ATCCTCAGCCTATTTAATGTTTAGTTTTAGTAAGAGACCTAACCAAATTA
TGTGTAAGGAAACCATGTGTTTTATATGTTAACTTTGTGAGCGGTTTTCA
TTTTGATATTATGCAAAACTAGAGTTGATTATTATAATTAAAAATGTACA
CCTAGACTAAGCCATTTACTTGTTTAGTTTGTTAGTCCTTATCTCTAATC
TAAGTTGAAGCTTTCTTGCGCTAAATTCGTTGTGTATAAACCAAGTGTAT
AAAGTTTTAGTTTCTAAAAGGACCCCATTTCTTCCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA

SD01241.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328.d 2002 CG9328.d 663..1682 590..1610 4915 98.9 Plus
CG9328-RB 1677 CG9328-RB 663..1677 590..1605 4905 99 Plus
CG9328.c 1483 CG9328.c 469..1483 590..1605 4905 99 Plus
CG9328.d 2002 CG9328.d 74..655 1..582 2865 99.4 Plus
CG9328-RB 1677 CG9328-RB 74..655 1..582 2865 99.4 Plus
CG9328.c 1483 CG9328.c 113..461 234..582 1715 99.4 Plus
CG9328.c 1483 CG9328.c 1..112 1..112 545 99.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20796227..20797010 1..785 3725 98.6 Plus
chr2L 23010047 chr2L 20811937..20812534 988..1585 2960 99.7 Plus
chr2L 23010047 chr2L 20811659..20811862 785..988 1020 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:44:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20797731..20798514 1..785 3710 98.5 Plus
2L 23513712 2L 20813433..20814055 988..1610 2995 98.7 Plus
2L 23513712 2L 20813155..20813358 785..988 1020 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20813433..20814055 988..1610 2995 98.7 Plus
2L 23513712 2L 20797731..20798312 1..582 2865 99.4 Plus
2L 23513712 2L 20813155..20813358 785..988 1020 100 Plus
2L 23513712 2L 20798320..20798514 590..785 910 98.4 Plus
Blast to na_te.dros performed 2019-03-16 10:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6705..6890 569..775 131 58.2 Plus

SD01241.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:06:54 Download gff for SD01241.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20811660..20811861 786..987 100 -> Plus
chr2L 20796227..20796671 1..445 99 == Plus
chr2L 20796771..20797010 545..785 95 -> Plus
chr2L 20811937..20812534 988..1585 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:23:05 Download gff for SD01241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RA 62..543 786..1267 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:32:27 Download gff for SD01241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RA 62..543 786..1267 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:28:48 Download gff for SD01241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RA 62..543 786..1267 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:07 Download gff for SD01241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RA 62..543 786..1267 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:55:40 Download gff for SD01241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RA 62..543 786..1267 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:23:04 Download gff for SD01241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 1..1584 1..1585 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:32:27 Download gff for SD01241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 15..1598 1..1585 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:28:48 Download gff for SD01241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 17..1600 1..1585 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:07 Download gff for SD01241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 1..1584 1..1585 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:55:40 Download gff for SD01241.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 17..1600 1..1585 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:06:54 Download gff for SD01241.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20797731..20798514 1..785 98 -> Plus
2L 20813156..20813357 786..987 100 -> Plus
2L 20813433..20814030 988..1585 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:06:54 Download gff for SD01241.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20797731..20798514 1..785 98 -> Plus
2L 20813156..20813357 786..987 100 -> Plus
2L 20813433..20814030 988..1585 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:06:54 Download gff for SD01241.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20797731..20798514 1..785 98 -> Plus
2L 20813156..20813357 786..987 100 -> Plus
2L 20813433..20814030 988..1585 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:28:48 Download gff for SD01241.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20797731..20798514 1..785 98 -> Plus
arm_2L 20813156..20813357 786..987 100 -> Plus
arm_2L 20813433..20814030 988..1585 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:36:44 Download gff for SD01241.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20797731..20798514 1..785 98 -> Plus
2L 20813156..20813357 786..987 100 -> Plus
2L 20813433..20814030 988..1585 99   Plus

SD01241.hyp Sequence

Translation from 835 to 1266

> SD01241.hyp
MMSMTSSPPATPTGVQTDSDGLILPKKLINPCMENIDRKELHRELKFNAR
VGKSVLNQKSELQRAYDKQKERHAAAEQHSPDADIVGGIPGLKGELGRVI
MERAQKHEAAAQKQDQEDAEERQYVNPEYLNVRAKLRTAHANN*

SD01241.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328-PB 143 CG9328-PB 1..143 1..143 735 100 Plus
CG9328-PA 180 CG9328-PA 38..180 1..143 735 100 Plus

SD01241.pep Sequence

Translation from 835 to 1266

> SD01241.pep
MMSMTSSPPATPTGVQTDSDGLILPKKLINPCMENIDRKELHRELKFNAR
VGKSVLNQKSELQRAYDKQKERHAAAEQHSPDADIVGGIPGLKGELGRVI
MERAQKHEAAAQKQDQEDAEERQYVNPEYLNVRAKLRTAHANN*

SD01241.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20886-PA 181 GF20886-PA 38..180 1..143 725 94.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21255-PA 180 GG21255-PA 38..180 1..143 764 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14357-PA 175 GH14357-PA 36..175 1..143 616 81.9 Plus
Dgri\GH10585-PA 175 GH10585-PA 36..175 1..143 616 81.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328-PB 143 CG9328-PB 1..143 1..143 735 100 Plus
CG9328-PA 180 CG9328-PA 38..180 1..143 735 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23121-PA 176 GI23121-PA 37..176 1..143 629 84 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18521-PA 181 GL18521-PA 39..181 1..143 690 88.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21705-PA 181 GA21705-PA 39..181 1..143 690 88.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23372-PA 180 GM23372-PA 38..180 1..143 764 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24282-PA 180 GD24282-PA 38..180 1..143 764 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23631-PA 181 GJ23631-PA 37..181 1..143 602 81.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15434-PA 185 GK15434-PA 52..185 14..143 594 85.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12349-PA 180 GE12349-PA 38..180 1..143 764 100 Plus