Clone SD01284 Report

Search the DGRC for SD01284

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:12
Well:84
Vector:pOT2
Associated Gene/TranscriptCG32341-RA
Protein status:SD01284.pep: validated full length
Preliminary Size:4362
Sequenced Size:4956

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32341 2001-10-10 Blastp of sequenced clone
CG32341 2003-01-01 Sim4 clustering to Release 3

Clone Sequence Records

SD01284.complete Sequence

4956 bp (4956 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061569

> SD01284.complete
GTTGAGGGTTGCATCCAAATCCGCCACAGATACGGATACATATCCTCAAC
CACTGGCACCCAGCCAGCTGAAGCGAGAACAAACCAAACTTTAATGGCAG
TCAACCCAACATTACAATCAACAAACCGAAACGAAGTGACTGAACCCAGT
GAAAGAAAAGTTTGAAAATGTTGCTTTAAGTTCCCTTCCAAGTTTTGCTA
CAGATTTTAGAAATCCATACTACTATAATAATATTATTAAACAATAATTT
TATATCGTCATCATGTAATATTTCATGAATACGCCAGGTATTTTTCCTCA
GTGCTTGGAGCAAGGAAAACTTATTCCTGGTTGAAAGCTTTCAAAGCTGA
ATTTTCTACGCCCCCTTCCCCTACCCGTCAATTTTTCCCCTCAGGCTCCC
CCAAAACGAGCGGATAGCCAAGAATTCTAATAAATGTCAGACGAGGACGC
TCCCCAAAAGCAAATTCCTTTTGATGAACTAGAAATTGTGCACGTGCAAA
GCCAGGACACGGTCGGCAATCGGAGGACGAGACGGTCGAGATGGATGAGT
GAGTTCCCGGCCGAGGACTCGGCGCTCGGCGCTCGGAACAACCCCCAAAA
GCAAATGTTGGGGTGTGTCGGAGTTAACGAGTTCAAATGTATTCATGAGC
CGGATCTTACCAGCCAGCTGGCTGCTATGTGGGAGGTGTCGCATGGGGGA
GCCCCAGCCCGCTGCCAAAGTCCTCCCCCTCTCGAGGATTTGGCTTCCTG
CCAGCTGCGAGGGTTGCCTGTGCCTGTGACTGTTCCATTGCCTTTGCAAC
CCGACTTTCCTGACTTATTGCCTCGCGGTCATGTGGGAGGATGTGGCTCG
GCTAAAAGGCCCTCCTCCACTCAATGTTTTGCAATTTGCAGGTGTTTTCA
TCATCAATTTCGACCAGCTGTAGACATTTTTGAACAAGCCAACAGGCTCA
GGGCAATACATTCGTGATTCAAATATATTGTACTTTTAATTACAGTATAT
AATTTGAACATATATATATCTCAGTGCTATGTTATAACAAATTAGTGGTC
GGTCAAGTTCGGAAATGTGTTTGTGTGAAAAGTGCGTAATCTCCAAGGAA
AAAAATGGAAGAGAAACAAACACTTCGCACCAAATGAGGTGGCAACAGGC
CATCTCTGGACAGGCCGTCTCTGATGTTGTCCAGAAGTTGGTTTGCCACA
TTAAAAACGATCAGACAATCCGCAGACCAGTTGATCGAACTATATAAAAT
AAAATATTTCCACATAGATTTTCCAAATAAAGCGAATGCGGGCAATATCA
GTGGCGGCTCGTTAAAAGTGTGTGGGGCGTATTGATAGCACCTTGAGGGT
CTGGGTCCCATCAATTCTCGTGTCTAATTTAGTGGCAGTTGGTGCCGCAA
CAAATCGCCTTCATTAGGCTCACAAATCGCTTGCTTATTGGCACGCCACT
CTGTTCAAAATTTATGTGAATTTATTACGGCCTAAAAAGTGAGTGCAAAT
TGTGCAAATGCGCCCATTCAGTACAGTAGTTAACAGCAATGGCCGCCCCG
CTGAGCTGACCATCCATGACAATGATCGTTATGGGCTTCCCCTCGATCTT
CCCGACCTCTTCCAGCTGCGTCCGAGGTGTTGTCGTACTGGGGAGTGTGG
CCAACGAGGCCGCGACCAAAGTGGGCTTAAATGAAGCGATTTCTTGGCCC
GGCCAACGATCTGTTATAAATTGATCGCGGGGCCAAGTGAACTGCTGTTG
GTTGAAGGATTCTATTACCACTTCATGGGGATATTAAGTTGGCCTAATCA
GGTAATGAGAGTAAGTGTGAAGTGGATACAAATATCTGTTTGATCATTTG
GGGAGTATGTTTAGGTCTAATTATATACTGACAATAAACATAAACGTTAT
TATTAATGAAGTTATGAATAAAATTGGTTTGTATACACGAAAAACACAAA
CTTTCTACCACTTCAATCCATATGCCCTGCCAATCAGAGGTGCCACGAAG
CTTTTTATATATTTTCCCCGTTTTCGGCGTATTTCGCTTTATTTATCTGG
CGCATAAATAAAATATTTTCGGTACTCGCTGGTCAGCTGTTTCCCATCAA
CGATTCCGATTCCCATGGGTTGTCTGCAGACTCTACTCTATCTGGTTCTA
TCACCTCCGCGGGTCTTCGCAGTGGAAGCAGCATAAAGAAGCGCTAATGT
TGCATTAAATTCAGCTGAAATCAACTGTTAAGTGGCTTTCAGTGAGCTAT
TTAATTCTCGAACACCCAAAAAGAGCAAAGGCGATTCAGAAGCGGAATTT
CATAAATAAATGTGCGTCTGCGATCCGAACTTGATTTACTTGCGCCTGAA
AATCCGAATGGCATGCAAGGGTATATGAGTTCTCTGTTTTTTAGGGGCAA
GTAAATAACATAGAGGATGTTGTGCTTTGAGCAATTATGATTGTGTTTTG
GCAGGCCGAGTTTTGAGCAATCTGTGAAATTCTACAAAATTCTGGCAGCT
GTTGAGGAAGTATATTAAATTCGATTGAAATGTGGTGTGGGAATTTTTAT
ACATCCGGTGGGCTATGAAAAGTAATATACTGAAATTACAAACATCAATT
TGACCTTCCATTACCTCTCTGTGATGTAAGATTGTGCTATCTTGTTCTCA
GGCCTTTTTCTATCTTCCCAGCTAACTTTCAACCTTTCCAAGTCGACCCA
AAACCCCGAAAACAGAGGTCAAAAGATTGCCAACCTCTGCGTTGCCTTCT
CCGTATGCAAATCTCAAGTGAACGGATCGGATCGATGAGGCCGCAAAAGA
GGTCGTCAATTGTGGCTCCTCGCATCCGCAGAAGAACAACTGCCTCCTCA
AGCCCAAAGGCATGTCAGTATTTCGTCAAAAGACACATGTTGTCGTCGAG
ACAGAGCCCCAGAGTCAGAAGACAAAAGGCGGAGACAGGCGATTCTAACG
AGAATAATATAGTTCTCCATTCTCTTTATTTATATTTATGGCGGTCGACG
AAAGGCTTCTTAGAAAATGCATAAAACCTGCGCCAAGACAGCCCCACATG
CTACGTAGACTGTGGCCAAATGTGCACGAACGATTGACTGTCGTGAAGCT
TCGTTTAAATGCGTTTTTAATTAATTATGCGACGCGCGTGCCACATGCAA
CGTGCTGCAAGGGGGGACACATCGGGCCAACTTCAGTGACAACACACGAT
CGACATCAAAATGCAGACATCGAGCGGGGAAGTCGTAAAAATGCGGCAAG
AAATTTTCAAATTTGTAAAACGCTAAAAATTCCCAAAACGCAGCCATATC
TTCTGGATGCAGAGAAAACAATTAGGAACACAAAAAGTAAGAAGTAAATT
CTGAAAACCATTACTTTTACTTTTAAATGTGTAACTTAAAAACGAGAATA
TTTATATTTCGGTGCAAGAATGCCATATAGCACTTAGTTAATATTTGAGC
TTCGCATTTAGCTTTAGTTCGTTTTTACCGTGCACATTCCCCTAACCCCT
TGGTGCCCCCTTTGGTAGCCGGCCACGCATGTGTTAATCTGCGTGGAGCA
CAATTAATTTTCTGCAAATGCCTGGCAGGCAGCATCACTGAACCCAACAA
TGCGCCTCGAGAGATCTCGGGACTTATATATTTTATTAATTACGCTCAAG
TGCTCTGGAAGGGAATGCGCGAGGGGGAGAGGGGGTGCTCCGCCGGGGCT
AATTACTGAAAAATTGGCAGTTGTCGTTGATTTTATGGTAAATTATTTGT
CAGCAAGATGGAAGATGGCCAATGGAAGACGCCAACTGCCGACGACCGGC
GACTCTTCAAATGTCTGTCTTTAAGGAGTGGGCAAGTGGTGGGCTGCGAG
GGGCTTAGGGGGCCTGCCTAGACAGATTTATGGCTGGCATTTGAAAGTTT
ATGTATAACCAAATGCGGTTTTGATTTTAGTTGCAGTTTGGCTGAGCCGA
AGCAGCTGCTCCGGGAAATGGAAAGAAATCGTGTTGGAAGGGACTGCTGC
CACATCGATCAATTGCAGATATAATAAAAAATAGTTCTTTGACCAAGTAT
TATATGAATAAGAGTTTCGACTCTTCTATTTGGAGTTATCTAAGAAATAA
ATTCCGATGTTCCGTCCTCTTAATTTTAATGTATCATCCTCATCCAAACA
AATGAAGCTATGCTCCATGTGATAGCCACTAAATCAACCAGATCACGCAC
TTGAAATAAAACTGTCAAAGATCTGTGGGGAACATCTAGTTCTGGCCGCA
GATAGAATCGAACAGAACCTGAAACTCACTTTAGCTTAACCTTTCCCATC
CTATAAATACCCATAACGATTTGAGGCGACATCGAAGGCAGTTGCCCGTG
CTAATTTATAGATAGATTCGATGGGCTGGGGTCTCGGGTAAACAAACTGC
AGTCTATTGGGGGCCACCCAAAGTACCCGAGTGCCGGATAGTCATTAAAA
GCGACTCGAGTCGGAGTTCTTTTTATGATAGCCACTAATCAGAGGCATAC
TTTGCATATTTCAACTAATTTTCATTAGCCGAATGGCTTTGTGTCTCCCT
GATTTTTATGGACACGGCCACAAATTTTAGTTAGTGTGGCTAAACACAAA
TGCGCTATAAATTGTCGGCTGATTAGTGCAACAATCTCAGGGTCATAAAA
CTTAATAAAAACCCATATAGACCCAAAATGCAGCTGGCAAAGGATCCGCT
AGTTAACACTCGAATGTATCCCATAGATACACAAGCGAACGACCATAAAA
ATCAAATTGCAATGTCTAAACGACTGTAAGCGGCTAATTTTGCACAAGTT
AATAAATTTGTTTCCCCGTTTCTTCTGGTTTCCTTCGGCGGAGTCGCAGG
CACACAGATCGTGCTCCAAAAGCTGATCTTCATATTTAGTAAGCTGCAAA
TTATTACCACAATTTCCAGACGCAATTTGCCAAAAAAGAAAAAAAAAAAA
AAAAAA

SD01284.complete Blast Records

Blast to MB8.fasta performed on 2010-07-15 16:24:19 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 796663..801576 11..4938 23605 98.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:44:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 796918..801849 11..4956 23635 98.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 798803..801849 1908..4956 14685 98.8 Plus
3L 28103327 3L 796918..798803 11..1896 9130 98.9 Plus
Blast to na_te.dros performed on 2019-03-15 14:49:18 has no hits.

SD01284.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:50:29 Download gff for SD01284.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 796663..801569 11..4931 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 13:43:55 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 13:43:55 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:50:29 Download gff for SD01284.complete
Subject Subject Range Query Range Percent Splice Strand
3L 796918..801831 11..4938 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:50:29 Download gff for SD01284.complete
Subject Subject Range Query Range Percent Splice Strand
3L 796918..801831 11..4938 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:50:29 Download gff for SD01284.complete
Subject Subject Range Query Range Percent Splice Strand
3L 796918..801831 11..4938 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:43:23 Download gff for SD01284.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 796918..801831 11..4938 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:43:23 Download gff for SD01284.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 796918..801831 11..4938 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:43:23 Download gff for SD01284.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 796918..801831 11..4938 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:34:50 Download gff for SD01284.complete
Subject Subject Range Query Range Percent Splice Strand
3L 796918..801831 11..4938 98   Plus

SD01284.pep Sequence

Translation from 433 to 966

> SD01284.pep
MSDEDAPQKQIPFDELEIVHVQSQDTVGNRRTRRSRWMSEFPAEDSALGA
RNNPQKQMLGCVGVNEFKCIHEPDLTSQLAAMWEVSHGGAPARCQSPPPL
EDLASCQLRGLPVPVTVPLPLQPDFPDLLPRGHVGGCGSAKRPSSTQCFA
ICRCFHHQFRPAVDIFEQANRLRAIHS*

SD01284.pep Blast Records

Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19363-PA 163 GM19363-PA 1..110 1..107 478 85.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13572-PA 91 GD13572-PA 13..91 99..177 357 88 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18023-PA 158 GE18023-PA 1..158 1..166 347 52.9 Plus

SD01284.hyp Sequence

Translation from 433 to 966

> SD01284.hyp
MSDEDAPQKQIPFDELEIVHVQSQDTVGNRRTRRSRWMSEFPAEDSALGA
RNNPQKQMLGCVGVNEFKCIHEPDLTSQLAAMWEVSHGGAPARCQSPPPL
EDLASCQLRGLPVPVTVPLPLQPDFPDLLPRGHVGGCGSAKRPSSTQCFA
ICRCFHHQFRPAVDIFEQANRLRAIHS*
Sequence SD01284.hyp has no blast hits.