Clone SD02002 Report

Search the DGRC for SD02002

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:20
Well:2
Vector:pOT2
Associated Gene/TranscriptSMSr-RB
Protein status:SD02002.pep: wuzgold
Preliminary Size:2008
Sequenced Size:1888

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32380 2002-12-11 Blastp of sequenced clone
SMSr 2008-04-29 Release 5.5 accounting
SMSr 2008-08-15 Release 5.9 accounting
SMSr 2008-12-18 5.12 accounting

Clone Sequence Records

SD02002.complete Sequence

1888 bp (1888 high quality bases) assembled on 2002-12-11

GenBank Submission: BT003174

> SD02002.complete
ATTTATTTGTGTACTCATATGCCTCTCATTCTGGCTAACTGGTTTTGTTA
TTTTTGTGTAACTTTGCGTGCATTAAATTTCAAATTCCCATTTGTTTATG
ATACCCTTCAAACGGCTGGTTTTACTTAACGGGCTACTCGTTCGTTGTCA
CCTGGATAACATCGTTAACAATGGTTATTGTGCACGAGCGGGTTCCGGAT
ATGAAGCGCTATCCGCCGCTGCCGGACATCTTCCTGGACAACGTGCCGCA
TATTCCGTGGGCCTTTAATATGTGCGAAATAACCGGCTCACTATTGTTCA
CCATTTGGGTGGTCGTGCTAACCTTCCACAAGTATAGATTGGTCCTACTG
AGGCGATTCTTTGCTCTGGCGGGCACGGTTTTCCTGCTGCGCTGCGTCAC
CATGTTGATCACGTCGCTGAGCGTACCGGGAACGCATCTGCAGTGCAGCC
AGAAGGACTTTGCCATCGATGATCCCAATGTGGACATGGTGGGCGCCTTG
ATTATCCGCATGTCACGAGCCTATCGCATCTGGAGCGGCCTGGGCATGTC
CATTCAGGGAGTGCGGACCTGCGGCGATTATATGTTTAGTGGTCACACGG
TGGCCTTGACCCTGCTCAACTTCTTTATCACAGAATACACGCCGCGGAAT
CTGTACTTCCTGCACACGCTGACCTGGCTGCTCAACATGTTTGGCATATT
CTTCATCCTGGCTGCCCACGAGCACTACTCCATCGATGTGTTTGTGGCCT
TCTATATCACCTCACGTCTGTTTCTGTACTATCATACTCTAGCAAATAAC
AGGGCTCTCATGCAAAGCGACTCCAAGAGGACGCGTGTTTGGTTTCCCAT
GTTTAGCTACTTCGAGAGCAGTGTCGATGGAATGGTGCCCAATGAATACG
ATACACTTGGCTCCCTCATCGATGGGATTATTGAGCAGATCTTCAAGGCC
AAGGATCAATTGGCCATATCCGTGAAGCGCTGCTGGCTGGATGCCCCGCT
GTCCGGCAATTCATCGGCTCACATGTTTGGCGGAGAATCTGAACAATGTT
TGCGCAATGGCACAGCATCGGCCGCTTTCTTTAGTCCTCACCAGTCGCTG
ATCGGAGGATTGGGTGGTCAGAGGAGCCAGACGCATTTGAATAGCGCCCA
ATCCGGGTCCTCCACACCCACACCAGCTACATCGGCGCCGACCAAGAGTT
TGCCGACCCAAAAGAAGACCTTCAGGGATGCGAGTGTGGATCCCTTTTCG
CGCACGACGTTCGCTGCGGTCCAGCAGGCAGAAAACGTCAAGGATTCGCC
GATGAAGGAAAAGAAGCATCTCTGATTCTCACAGCCATTCGCTCTTCCAC
ATTCGTATATCGATATCGATGTCGCTCTTCGAAAAGCAAACATGCAGAAA
CTAACCATACCGACTGATATTTTTATTTCGAAATTTCCATCGATCCCCTT
CCTTTCACAGCTCTCCCCTGTATTATTGACAGCATTCTACCATTTGTAGT
GCCTTCCGGGTCAGATCCCCCCAGATCATCCACCCACCATTTAGAAAGTC
GTTATGTCCCCCAAGAGCCTTTCCTTAGTTTACTTGTGGAATTTTATGAA
TATCGAAGTTTTTTTTAGCCGGGAGATGCTCCACGTCGGCTTTGAATTGA
TTATGATGATAAGATAGCCCTCCTCATTCCGTTCAATTGAGTTTTGAACT
AAATGTATTTATTATTGAAGACTTTTTAATGCATTATTATGTAATTGTAA
GCATGTGAATCAAGCGTATTTTTAGTTAACTAGTGTTAAGTTTGGAAAGT
TTCTGTTGAACGCACAAACACATTAAATAAATCAAAATGAATATTCTCAG
AGTCTGGAGAAGCCACTGTAAAAAAAAAAAAAAAAAAA

SD02002.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
SMSr-RB 1877 SMSr-RB 1..1872 1..1872 9345 99.9 Plus
SMSr-RA 2745 SMSr-RA 1000..2740 132..1872 8690 99.9 Plus
SMSr.b 2897 SMSr.b 1152..2892 132..1872 8690 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7366155..7367221 1869..803 5335 100 Minus
chr3L 24539361 chr3L 7367510..7368018 636..128 2515 99.6 Minus
chr3L 24539361 chr3L 7367284..7367451 804..637 840 100 Minus
chr3L 24539361 chr3L 7368753..7368885 133..1 665 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:45:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7374047..7375116 1872..803 5335 99.9 Minus
3L 28110227 3L 7375405..7375913 636..128 2530 99.8 Minus
3L 28110227 3L 7375179..7375346 804..637 840 100 Minus
3L 28110227 3L 7376648..7376780 133..1 665 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7367147..7368216 1872..803 5335 99.9 Minus
3L 28103327 3L 7368505..7369013 636..128 2530 99.8 Minus
3L 28103327 3L 7368279..7368446 804..637 840 100 Minus
3L 28103327 3L 7369748..7369880 133..1 665 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:12:37 has no hits.

SD02002.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:13:38 Download gff for SD02002.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7367285..7367451 637..803 100 <- Minus
chr3L 7366155..7367220 804..1869 100 <- Minus
chr3L 7367510..7368013 133..636 99 <- Minus
chr3L 7368754..7368885 1..132 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:57:09 Download gff for SD02002.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RA 606..1803 125..1325 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:00:42 Download gff for SD02002.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RA 606..1803 125..1325 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:08:35 Download gff for SD02002.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RA 606..1803 125..1325 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:51:13 Download gff for SD02002.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RA 606..1803 125..1325 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:49 Download gff for SD02002.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RA 606..1803 125..1325 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:18:04 Download gff for SD02002.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RB 1..1869 1..1869 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:00:42 Download gff for SD02002.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RB 1..1869 1..1869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:35 Download gff for SD02002.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RB 1..1869 1..1869 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:51:13 Download gff for SD02002.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RB 1..1869 1..1869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:49 Download gff for SD02002.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RA 850..2591 125..1869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:13:38 Download gff for SD02002.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7374050..7375115 804..1869 99 <- Minus
3L 7375180..7375346 637..803 100 <- Minus
3L 7375405..7375908 133..636 100 <- Minus
3L 7376649..7376780 1..132 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:13:38 Download gff for SD02002.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7374050..7375115 804..1869 99 <- Minus
3L 7375180..7375346 637..803 100 <- Minus
3L 7375405..7375908 133..636 100 <- Minus
3L 7376649..7376780 1..132 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:13:38 Download gff for SD02002.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7374050..7375115 804..1869 99 <- Minus
3L 7375180..7375346 637..803 100 <- Minus
3L 7375405..7375908 133..636 100 <- Minus
3L 7376649..7376780 1..132 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:35 Download gff for SD02002.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7368280..7368446 637..803 100 <- Minus
arm_3L 7367150..7368215 804..1869 99 <- Minus
arm_3L 7368505..7369008 133..636 100 <- Minus
arm_3L 7369749..7369880 1..132 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:23:03 Download gff for SD02002.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7367150..7368215 804..1869 99 <- Minus
3L 7368280..7368446 637..803 100 <- Minus
3L 7368505..7369008 133..636 100 <- Minus
3L 7369749..7369880 1..132 100   Minus

SD02002.pep Sequence

Translation from 170 to 1324

> SD02002.pep
MVIVHERVPDMKRYPPLPDIFLDNVPHIPWAFNMCEITGSLLFTIWVVVL
TFHKYRLVLLRRFFALAGTVFLLRCVTMLITSLSVPGTHLQCSQKDFAID
DPNVDMVGALIIRMSRAYRIWSGLGMSIQGVRTCGDYMFSGHTVALTLLN
FFITEYTPRNLYFLHTLTWLLNMFGIFFILAAHEHYSIDVFVAFYITSRL
FLYYHTLANNRALMQSDSKRTRVWFPMFSYFESSVDGMVPNEYDTLGSLI
DGIIEQIFKAKDQLAISVKRCWLDAPLSGNSSAHMFGGESEQCLRNGTAS
AAFFSPHQSLIGGLGGQRSQTHLNSAQSGSSTPTPATSAPTKSLPTQKKT
FRDASVDPFSRTTFAAVQQAENVKDSPMKEKKHL*

SD02002.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23791-PA 606 GF23791-PA 232..595 1..366 1545 79.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14968-PA 590 GG14968-PA 209..590 1..384 1850 93 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14877-PA 614 GH14877-PA 251..614 1..384 1392 70.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
SMSr-PA 600 CG32380-PA 217..600 1..384 2016 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12850-PA 586 GI12850-PA 236..529 1..296 1362 83.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24298-PA 590 GL24298-PA 227..590 1..384 1428 72.3 Plus
Dper\GL14970-PA 563 GL14970-PA 202..549 1..321 1203 64.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16857-PA 590 GA16857-PA 227..590 1..384 1435 72.5 Plus
Dpse\GA22344-PA 556 GA22344-PA 202..542 1..321 1164 63.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13763-PA 601 GM13763-PA 217..601 1..384 1994 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13061-PA 560 GD13061-PA 217..560 1..384 1726 86.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12995-PA 580 GJ12995-PA 241..513 1..273 1357 88.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16808-PA 639 GK16808-PA 245..624 1..359 1432 71.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20416-PA 590 GE20416-PA 209..590 1..384 1879 93.8 Plus

SD02002.hyp Sequence

Translation from 170 to 1324

> SD02002.hyp
MVIVHERVPDMKRYPPLPDIFLDNVPHIPWAFNMCEITGSLLFTIWVVVL
TFHKYRLVLLRRFFALAGTVFLLRCVTMLITSLSVPGTHLQCSQKDFAID
DPNVDMVGALIIRMSRAYRIWSGLGMSIQGVRTCGDYMFSGHTVALTLLN
FFITEYTPRNLYFLHTLTWLLNMFGIFFILAAHEHYSIDVFVAFYITSRL
FLYYHTLANNRALMQSDSKRTRVWFPMFSYFESSVDGMVPNEYDTLGSLI
DGIIEQIFKAKDQLAISVKRCWLDAPLSGNSSAHMFGGESEQCLRNGTAS
AAFFSPHQSLIGGLGGQRSQTHLNSAQSGSSTPTPATSAPTKSLPTQKKT
FRDASVDPFSRTTFAAVQQAENVKDSPMKEKKHL*

SD02002.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
SMSr-PA 600 CG32380-PA 217..600 1..384 2016 100 Plus