Clone SD02021 Report

Search the DGRC for SD02021

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:20
Well:21
Vector:pOT2
Associated Gene/TranscriptCG10672-RA
Protein status:SD02021.pep: gold
Preliminary Size:1176
Sequenced Size:1113

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10672 2001-01-01 Release 2 assignment
CG10672 2003-01-01 Sim4 clustering to Release 3
CG10672 2003-01-15 Blastp of sequenced clone
CG10672 2008-04-29 Release 5.5 accounting
CG10672 2008-08-15 Release 5.9 accounting
CG10672 2008-12-18 5.12 accounting

Clone Sequence Records

SD02021.complete Sequence

1113 bp (1113 high quality bases) assembled on 2003-01-15

GenBank Submission: AY069779

> SD02021.complete
AAAAGAAGAACTAGTAAACAGTTTGGAGATTCGTAGTTAAAATAGGGAAA
ATCAATTATTAGGCAACGAATCTCAAGATCCTTCGCAAAAGTCCTACTTC
AAAAATGTTGCATCTGAGCAAACAACTGGTGGTCAGGGCGCCCAAGATCC
GTCTGAATGCCAGCGCTGTGAGTGGAAGTGGTCAAAGTTCAAGTTTCGAT
CAAAACAGCAACAATTACAGCCGAAAACTTGTTGGCCCTAATCTCAATCA
ATGCCACAAACGCTTGTCCAGCAGTAGTCAAAGTTCGACAGCCGGCACGA
TGAAGCGTTTGGCAGGAAAAGTAGCCGTGGTCACCGCCTCCACCGATGGC
ATTGGTTTCGCGATTGCCAAAAGGCTGGCCGAAGATGGCGCCGCAGTGGT
CATCAGCAGTCGCAAGCAAAAGAATGTGGACTCTGCTCTGGCGGAGCTGC
GCAAACTGAACTTGAATGTCCACGGTCTGAAGTGCCATGTCAGCGAACCC
GAGGATCGCAAACAGCTCTTCGAGGAGACCATCAGCAAGTTTGGCAAGCT
TAACATTCTGGTCAGCAATGCAGCCACCAATCCTGCGGTCGGCGGTGTCC
TCGAGTGCGACGAGAAGGTGTGGGACAAGATCTTCGATGTGAACGTGAAG
AGTTCCTATCTGCTGGCCAAGGAGGCACTGCCTCTCCTGCGCCAGCAAAA
GAACTCCAGCATCGTTTTCGTCTCCTCCATTGCTGGCTATGATGCCTTTG
AGCTACTGGGAGCCTATTCCGTCAGCAAGACCGCGCTGATTGGCTTGACC
AAGGCAGCCGCCAAGGATCTGGCGCCCGAGGGCATTCGCGTCAACTGCCT
GGCTCCAGGAGTCATCAGGACAAAGTTCTCGAAAGCACTGTACGAGAATG
AGTCGGCGAATGAAGCGGCTTTGAGCAAAATACCCATGGGTCGTCTGGGC
ACCAGCGAGGAGATGGCTGGCGTGGTCTCCTTTTTGGTCTCCGAGGATGC
GGGCTACATTACCGGAGAGTCCATTGTGGCGGGCGGTGGAATGACAGCTC
GTTTGTAATCGGTGTACATAAATATAATTTCTTACGGGCTAAAAAAAAAA
AAAAAAAAAAAAA

SD02021.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-RA 1288 CG10672-RA 104..1194 1..1091 5350 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5133397..5133800 752..349 2020 100 Minus
chr3L 24539361 chr3L 5133863..5134211 349..1 1745 100 Minus
chr3L 24539361 chr3L 5132997..5133336 1090..751 1700 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:45:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5140840..5141243 752..349 1960 99 Minus
3L 28110227 3L 5141306..5141654 349..1 1745 100 Minus
3L 28110227 3L 5140439..5140779 1091..751 1660 99.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5133940..5134343 752..349 1960 99 Minus
3L 28103327 3L 5134406..5134754 349..1 1745 100 Minus
3L 28103327 3L 5133539..5133879 1091..751 1660 99.1 Minus
Blast to na_te.dros performed on 2019-03-16 15:02:41 has no hits.

SD02021.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:03:30 Download gff for SD02021.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5132997..5133334 753..1090 100 <- Minus
chr3L 5133397..5133799 350..752 100 <- Minus
chr3L 5133863..5134211 1..349 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:57:10 Download gff for SD02021.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 1..954 105..1058 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:56:09 Download gff for SD02021.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 1..954 105..1058 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:20 Download gff for SD02021.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 1..954 105..1058 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:04 Download gff for SD02021.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 1..954 105..1058 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:40:03 Download gff for SD02021.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 1..954 105..1058 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:11:45 Download gff for SD02021.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 1..1090 1..1090 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:56:09 Download gff for SD02021.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 1..1090 1..1090 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:20 Download gff for SD02021.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 1..1082 9..1090 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:04 Download gff for SD02021.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 1..1090 1..1090 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:03 Download gff for SD02021.complete
Subject Subject Range Query Range Percent Splice Strand
CG10672-RA 1..1082 9..1090 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:03:30 Download gff for SD02021.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5140440..5140777 753..1090 99 <- Minus
3L 5140840..5141242 350..752 99 <- Minus
3L 5141306..5141654 1..349 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:03:30 Download gff for SD02021.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5140440..5140777 753..1090 99 <- Minus
3L 5140840..5141242 350..752 99 <- Minus
3L 5141306..5141654 1..349 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:03:30 Download gff for SD02021.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5140440..5140777 753..1090 99 <- Minus
3L 5140840..5141242 350..752 99 <- Minus
3L 5141306..5141654 1..349 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:20 Download gff for SD02021.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5133540..5133877 753..1090 99 <- Minus
arm_3L 5133940..5134342 350..752 99 <- Minus
arm_3L 5134406..5134754 1..349 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:18:18 Download gff for SD02021.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5133940..5134342 350..752 99 <- Minus
3L 5133540..5133877 753..1090 99 <- Minus
3L 5134406..5134754 1..349 100   Minus

SD02021.pep Sequence

Translation from 104 to 1057

> SD02021.pep
MLHLSKQLVVRAPKIRLNASAVSGSGQSSSFDQNSNNYSRKLVGPNLNQC
HKRLSSSSQSSTAGTMKRLAGKVAVVTASTDGIGFAIAKRLAEDGAAVVI
SSRKQKNVDSALAELRKLNLNVHGLKCHVSEPEDRKQLFEETISKFGKLN
ILVSNAATNPAVGGVLECDEKVWDKIFDVNVKSSYLLAKEALPLLRQQKN
SSIVFVSSIAGYDAFELLGAYSVSKTALIGLTKAAAKDLAPEGIRVNCLA
PGVIRTKFSKALYENESANEAALSKIPMGRLGTSEEMAGVVSFLVSEDAG
YITGESIVAGGGMTARL*

SD02021.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10473-PA 318 GF10473-PA 1..318 1..317 1367 85.9 Plus
Dana\GF22046-PA 251 GF22046-PA 3..244 69..312 317 33.9 Plus
Dana\GF18656-PA 256 GF18656-PA 3..252 69..315 312 33.3 Plus
Dana\GF22468-PA 249 GF22468-PA 6..249 69..314 312 34.9 Plus
Dana\GF19246-PA 242 GF19246-PA 5..240 69..314 273 34 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14143-PA 317 GG14143-PA 1..317 1..317 1605 96.8 Plus
Dere\GG12728-PA 251 GG12728-PA 3..244 69..312 320 34.9 Plus
Dere\GG18643-PA 249 GG18643-PA 6..248 69..313 290 32.8 Plus
Dere\GG10914-PA 256 GG10914-PA 3..252 69..315 286 30.6 Plus
Dere\GG12965-PA 257 GG12965-PA 1..253 66..315 273 33.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15276-PA 325 GH15276-PA 1..325 1..317 1281 77.8 Plus
Dgri\GH12482-PA 248 GH12482-PA 6..247 69..313 314 32.4 Plus
Dgri\GH22984-PA 257 GH22984-PA 1..250 66..312 272 34.4 Plus
Dgri\GH22973-PA 257 GH22973-PA 1..253 66..315 272 31.9 Plus
Dgri\GH17517-PA 257 GH17517-PA 3..253 69..315 265 30.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-PA 317 CG10672-PA 1..317 1..317 1560 100 Plus
CG31546-PA 264 CG31546-PA 12..257 70..312 329 33.7 Plus
CG3699-PA 251 CG3699-PA 3..244 69..312 328 33.1 Plus
CG3603-PB 249 CG3603-PB 6..248 69..313 311 32.8 Plus
CG3603-PA 249 CG3603-PA 6..248 69..313 311 32.8 Plus
CG31548-PA 256 CG31548-PA 4..252 70..315 306 31.5 Plus
CG7322-PC 242 CG7322-PC 5..238 69..312 284 33.1 Plus
CG7322-PB 242 CG7322-PB 5..238 69..312 284 33.1 Plus
CG7322-PA 242 CG7322-PA 5..238 69..312 284 33.1 Plus
CG31549-PB 257 CG31549-PB 1..253 66..315 284 33.3 Plus
CG31549-PA 257 CG31549-PA 1..253 66..315 284 33.3 Plus
CG12171-PA 257 CG12171-PA 1..253 66..315 263 29.8 Plus
scu-PA 255 CG7113-PA 6..251 73..313 195 26.9 Plus
CG7601-PA 326 CG7601-PA 50..244 68..259 182 25.5 Plus
CG5590-PA 412 CG5590-PA 6..215 68..272 180 25.2 Plus
Mfe2-PB 598 CG3415-PB 2..261 60..316 180 28.8 Plus
Mfe2-PA 598 CG3415-PA 2..261 60..316 180 28.8 Plus
antdh-PA 250 CG1386-PA 1..202 66..257 176 27.6 Plus
firl-PE 318 CG14946-PE 51..223 67..239 176 28.7 Plus
firl-PC 318 CG14946-PC 51..223 67..239 176 28.7 Plus
firl-PD 318 CG14946-PD 51..223 67..239 176 28.7 Plus
CG9360-PA 251 CG9360-PA 1..231 66..295 174 27.5 Plus
CG2070-PB 325 CG2070-PB 43..240 71..257 173 28.3 Plus
CG2070-PA 325 CG2070-PA 43..240 71..257 173 28.3 Plus
CG2064-PA 330 CG2064-PA 43..243 71..260 164 27.4 Plus
CG9265-PD 399 CG9265-PD 82..272 67..255 164 24.5 Plus
CG9265-PC 399 CG9265-PC 82..272 67..255 164 24.5 Plus
CG9265-PB 399 CG9265-PB 82..272 67..255 164 24.5 Plus
CG9265-PA 399 CG9265-PA 82..272 67..255 164 24.5 Plus
CG10962-PB 249 CG10962-PB 1..201 66..257 162 28.6 Plus
Ldsdh1-PA 320 CG2254-PA 58..296 71..300 159 25.3 Plus
CG40486-PC 247 CG40486-PC 1..208 66..263 156 24.3 Plus
CG40486-PB 247 CG40486-PB 1..208 66..263 156 24.3 Plus
CG30491-PB 331 CG30491-PB 45..242 71..257 155 27.8 Plus
CG30491-PA 331 CG30491-PA 45..242 71..257 155 27.8 Plus
CG15629-PA 325 CG15629-PA 51..244 66..256 151 25.4 Plus
CG40485-PA 231 CG40485-PA 1..182 66..239 148 26.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11985-PA 329 GI11985-PA 1..329 1..317 1361 81.9 Plus
Dmoj\GI14997-PA 255 GI14997-PA 3..248 69..312 330 33.5 Plus
Dmoj\GI22521-PA 256 GI22521-PA 3..252 69..315 299 31.3 Plus
Dmoj\GI10241-PA 257 GI10241-PA 1..253 66..315 291 33.2 Plus
Dmoj\GI11166-PA 249 GI11166-PA 6..248 69..313 273 32.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22470-PA 272 GL22470-PA 1..272 1..317 1041 70.1 Plus
Dper\GL14417-PA 255 GL14417-PA 3..248 69..312 324 34.3 Plus
Dper\GL23021-PA 256 GL23021-PA 3..252 69..315 290 32.5 Plus
Dper\GL24510-PA 257 GL24510-PA 1..250 66..312 267 33.3 Plus
Dper\GL21318-PA 350 GL21318-PA 113..346 69..312 261 32.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10483-PA 319 GA10483-PA 1..319 1..317 1345 84.1 Plus
Dpse\GA17622-PA 255 GA17622-PA 3..248 69..312 324 34.3 Plus
Dpse\GA16317-PA 256 GA16317-PA 3..252 69..315 291 32.6 Plus
Dpse\GA17551-PB 242 GA17551-PB 6..239 69..304 278 33.1 Plus
Dpse\GA27306-PA 257 GA27306-PA 1..250 66..312 272 33.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13930-PA 317 GM13930-PA 1..317 1..317 1623 98.4 Plus
Dsec\GM19006-PA 251 GM19006-PA 3..244 69..312 314 33.5 Plus
Dsec\GM10606-PA 256 GM10606-PA 3..252 69..315 296 31.3 Plus
Dsec\GM19262-PA 249 GM19262-PA 6..248 69..313 288 33.1 Plus
Dsec\GM22780-PA 242 GM22780-PA 5..240 69..314 280 32.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16445-PA 251 GD16445-PA 3..244 69..312 314 33.5 Plus
Dsim\GD19595-PA 256 GD19595-PA 3..252 69..315 296 31.3 Plus
Dsim\GD16628-PA 249 GD16628-PA 6..248 69..313 287 32.8 Plus
Dsim\GD24467-PA 242 GD24467-PA 5..240 69..314 278 32.4 Plus
Dsim\GD19803-PA 257 GD19803-PA 1..253 66..315 255 31 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12209-PA 328 GJ12209-PA 1..328 1..317 1360 83.9 Plus
Dvir\GJ15354-PA 255 GJ15354-PA 3..248 69..312 328 32.7 Plus
Dvir\GJ10124-PA 255 GJ10124-PA 3..251 69..315 323 32.9 Plus
Dvir\GJ10125-PA 255 GJ10125-PA 3..251 69..315 303 31.1 Plus
Dvir\GJ15296-PA 249 GJ15296-PA 6..248 69..313 288 31.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20583-PA 295 GK20583-PA 38..295 48..317 1162 86.1 Plus
Dwil\GK10169-PA 255 GK10169-PA 3..248 69..312 323 35.1 Plus
Dwil\GK20088-PA 242 GK20088-PA 5..238 69..312 287 33.9 Plus
Dwil\GK25534-PA 248 GK25534-PA 6..247 69..313 277 31 Plus
Dwil\GK13928-PA 257 GK13928-PA 1..253 66..315 268 31 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20571-PA 252 GE20571-PA 1..252 66..317 1300 99.2 Plus
Dyak\GE16554-PA 251 GE16554-PA 3..244 69..312 304 34.5 Plus
Dyak\GE16292-PA 249 GE16292-PA 6..248 69..313 297 33.2 Plus
Dyak\GE24152-PA 256 GE24152-PA 3..252 69..315 294 31.2 Plus
Dyak\GE15485-PA 242 GE15485-PA 5..240 69..314 281 32.8 Plus

SD02021.hyp Sequence

Translation from 104 to 1057

> SD02021.hyp
MLHLSKQLVVRAPKIRLNASAVSGSGQSSSFDQNSNNYSRKLVGPNLNQC
HKRLSSSSQSSTAGTMKRLAGKVAVVTASTDGIGFAIAKRLAEDGAAVVI
SSRKQKNVDSALAELRKLNLNVHGLKCHVSEPEDRKQLFEETISKFGKLN
ILVSNAATNPAVGGVLECDEKVWDKIFDVNVKSSYLLAKEALPLLRQQKN
SSIVFVSSIAGYDAFELLGAYSVSKTALIGLTKAAAKDLAPEGIRVNCLA
PGVIRTKFSKALYENESANEAALSKIPMGRLGTSEEMAGVVSFLVSEDAG
YITGESIVAGGGMTARL*

SD02021.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10672-PA 317 CG10672-PA 1..317 1..317 1560 100 Plus
CG31546-PA 264 CG31546-PA 12..257 70..312 329 33.7 Plus
CG3699-PA 251 CG3699-PA 3..244 69..312 328 33.1 Plus
CG3603-PB 249 CG3603-PB 6..248 69..313 311 32.8 Plus
CG3603-PA 249 CG3603-PA 6..248 69..313 311 32.8 Plus