SD02058.complete Sequence
1041 bp (1041 high quality bases) assembled on 2002-06-12
GenBank Submission: AY122240
> SD02058.complete
TATGCACAATTTTTTTTTTGTTAAAAGTGCTATTAATTTTATGCTTTAAC
TGGATGTAAATGGACCGTTAAAGCCCAGCTCTGCTTGCTGATGCCTGCGT
GTATCGAAAACCAAAAACCAGCCGCAGAGCAACGAACCCGCGACCGCCGA
AACATTTCAAAGACAATCCACCAACAGCGGCAACACCGTCAACAGTCGGC
CACACCACCATCCATTCACCGTCACCATCACCATCACCGTCGCCAACAGG
ACGAGGGCGAGGACAATGGATCAACTCAAACTCAGACCTTGTAACTGCCT
TACCGCACATCCACTGGCAGAGTGGGTGTGGGTGGAATGTGAGCGGCTGT
GCACCCTTCGTCTTGCCAGTTTTCGAAAAGGGTTCTCCGAAAAGGGTTGC
CACCGCACCCCGATGCCCATTGAGGACTCATGGAGCAAACGGTTTCGGCA
TTTCCCTTTTGTTTCCGCCTGCATCCTTTGGCCAAGACACGGACACCTTC
CCCTTCCCACCACGCTGCCACAATGGAAAATACAATTTTCGCAATCTTTG
CTTATCTTTTCATCTCTCTGTGGCTGCCTCGTTTGCTGCACGATTCGTTG
TTGCTGCTGTTGGCCATCCAGAAAATCGGTAAAAAGCTAAGATCCAGGGG
GCGTGGCTGATACGAAGGCGGAGGAGCAGAAGAATGTGTTGGCCGTGCAT
CCTTTGTTTGTCGGCAGTGCCGGTAATGCCGAGTTGGAGCAGTAAGCTCT
AAGCATCGGTTATGGGCGAGGTTCGTTTGAAAAATAACAACCGTTTCCCA
TCTGATTCTTTTTTATGGTGGCTGAGTCCTTAATATTTATTGAAAAAGGC
GACATTCCATTTTATTAATTTTTATTAAGTAAGAAAGATAATCAAGTGCA
CTTTTCATGACTTACTATCTTTATTATACTATCATAAAACTTATAGCATA
CTAATACTAATATGCTATATATATTATATATACTAATATATACTAAAAAT
ATATATACGAATATGTTATAAAAAAAAAAAAAAAAAAAAAA
SD02058.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MB6.chr3L.pasa.7892.a | 966 | MB6.chr3L.pasa.7892.a | 1..933 | 23..962 | 4495 | 98.7 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:15:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 19431340..19431795 | 804..349 | 2250 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 19435459..19435807 | 349..1 | 1715 | 99.4 | Minus |
chr3L | 24539361 | chr3L | 19431119..19431270 | 962..804 | 610 | 93.7 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:45:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19441939..19442394 | 804..349 | 2280 | 100 | Minus |
3L | 28110227 | 3L | 19446035..19446383 | 349..1 | 1730 | 99.7 | Minus |
3L | 28110227 | 3L | 19441718..19441869 | 962..804 | 595 | 93.1 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 19435039..19435494 | 804..349 | 2280 | 100 | Minus |
3L | 28103327 | 3L | 19439135..19439483 | 349..1 | 1730 | 99.7 | Minus |
3L | 28103327 | 3L | 19434818..19434903 | 962..877 | 415 | 98.8 | Minus |
3L | 28103327 | 3L | 19434907..19434969 | 866..804 | 315 | 100 | Minus |
Blast to na_te.dros performed 2019-03-15 13:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1626 | 612..524 | 117 | 63.4 | Minus |
SD02058.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:16:17 Download gff for
SD02058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 19431112..19431269 | 805..971 | 92 | <- | Minus |
chr3L | 19431340..19431794 | 350..804 | 99 | <- | Minus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:22:02 Download gff for
SD02058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RB | 1..375 | 266..640 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:59:50 Download gff for
SD02058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 1..375 | 266..640 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 18:12:50 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:26:00 Download gff for
SD02058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 1..375 | 266..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:22:02 Download gff for
SD02058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 1..955 | 1..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:59:50 Download gff for
SD02058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 1..955 | 1..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 18:12:50 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:26:00 Download gff for
SD02058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33062-RA | 1..954 | 1..961 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:16:17 Download gff for
SD02058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19441939..19442393 | 350..804 | 100 | <- | Minus |
3L | 19446035..19446383 | 1..349 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:16:17 Download gff for
SD02058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19441939..19442393 | 350..804 | 100 | <- | Minus |
3L | 19446035..19446383 | 1..349 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:16:17 Download gff for
SD02058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19441939..19442393 | 350..804 | 100 | <- | Minus |
3L | 19446035..19446383 | 1..349 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:59:50 Download gff for
SD02058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19435039..19435493 | 350..804 | 100 | <- | Minus |
arm_3L | 19439135..19439483 | 1..349 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:45:34 Download gff for
SD02058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19435039..19435493 | 350..804 | 100 | <- | Minus |
3L | 19439135..19439483 | 1..349 | 99 | | Minus |
SD02058.pep Sequence
Translation from 265 to 639
> SD02058.pep
MDQLKLRPCNCLTAHPLAEWVWVECERLCTLRLASFRKGFSEKGCHRTPM
PIEDSWSKRFRHFPFVSACILWPRHGHLPLPTTLPQWKIQFSQSLLIFSS
LCGCLVCCTIRCCCCWPSRKSVKS*
SD02058.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33062-PB | 124 | CG33062-PB | 1..124 | 1..124 | 720 | 100 | Plus |
CG33062-PA | 124 | CG33062-PA | 1..124 | 1..124 | 720 | 100 | Plus |
SD02058.hyp Sequence
Translation from 265 to 639
> SD02058.hyp
MDQLKLRPCNCLTAHPLAEWVWVECERLCTLRLASFRKGFSEKGCHRTPM
PIEDSWSKRFRHFPFVSACILWPRHGHLPLPTTLPQWKIQFSQSLLIFSS
LCGCLVCCTIRCCCCWPSRKSVKS*
SD02058.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33062-PB | 124 | CG33062-PB | 1..124 | 1..124 | 720 | 100 | Plus |
CG33062-PA | 124 | CG33062-PA | 1..124 | 1..124 | 720 | 100 | Plus |