Clone SD02058 Report

Search the DGRC for SD02058

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:20
Well:58
Vector:pOT2
Associated Gene/TranscriptCG33062-RA
Protein status:SD02058.pep: gold
Preliminary Size:1243
Sequenced Size:1041

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33062 2002-06-12 Blastp of sequenced clone
CG33062 2003-01-01 Sim4 clustering to Release 3

Clone Sequence Records

SD02058.complete Sequence

1041 bp (1041 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122240

> SD02058.complete
TATGCACAATTTTTTTTTTGTTAAAAGTGCTATTAATTTTATGCTTTAAC
TGGATGTAAATGGACCGTTAAAGCCCAGCTCTGCTTGCTGATGCCTGCGT
GTATCGAAAACCAAAAACCAGCCGCAGAGCAACGAACCCGCGACCGCCGA
AACATTTCAAAGACAATCCACCAACAGCGGCAACACCGTCAACAGTCGGC
CACACCACCATCCATTCACCGTCACCATCACCATCACCGTCGCCAACAGG
ACGAGGGCGAGGACAATGGATCAACTCAAACTCAGACCTTGTAACTGCCT
TACCGCACATCCACTGGCAGAGTGGGTGTGGGTGGAATGTGAGCGGCTGT
GCACCCTTCGTCTTGCCAGTTTTCGAAAAGGGTTCTCCGAAAAGGGTTGC
CACCGCACCCCGATGCCCATTGAGGACTCATGGAGCAAACGGTTTCGGCA
TTTCCCTTTTGTTTCCGCCTGCATCCTTTGGCCAAGACACGGACACCTTC
CCCTTCCCACCACGCTGCCACAATGGAAAATACAATTTTCGCAATCTTTG
CTTATCTTTTCATCTCTCTGTGGCTGCCTCGTTTGCTGCACGATTCGTTG
TTGCTGCTGTTGGCCATCCAGAAAATCGGTAAAAAGCTAAGATCCAGGGG
GCGTGGCTGATACGAAGGCGGAGGAGCAGAAGAATGTGTTGGCCGTGCAT
CCTTTGTTTGTCGGCAGTGCCGGTAATGCCGAGTTGGAGCAGTAAGCTCT
AAGCATCGGTTATGGGCGAGGTTCGTTTGAAAAATAACAACCGTTTCCCA
TCTGATTCTTTTTTATGGTGGCTGAGTCCTTAATATTTATTGAAAAAGGC
GACATTCCATTTTATTAATTTTTATTAAGTAAGAAAGATAATCAAGTGCA
CTTTTCATGACTTACTATCTTTATTATACTATCATAAAACTTATAGCATA
CTAATACTAATATGCTATATATATTATATATACTAATATATACTAAAAAT
ATATATACGAATATGTTATAAAAAAAAAAAAAAAAAAAAAA

SD02058.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
MB6.chr3L.pasa.7892.a 966 MB6.chr3L.pasa.7892.a 1..933 23..962 4495 98.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19431340..19431795 804..349 2250 99.6 Minus
chr3L 24539361 chr3L 19435459..19435807 349..1 1715 99.4 Minus
chr3L 24539361 chr3L 19431119..19431270 962..804 610 93.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:45:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19441939..19442394 804..349 2280 100 Minus
3L 28110227 3L 19446035..19446383 349..1 1730 99.7 Minus
3L 28110227 3L 19441718..19441869 962..804 595 93.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19435039..19435494 804..349 2280 100 Minus
3L 28103327 3L 19439135..19439483 349..1 1730 99.7 Minus
3L 28103327 3L 19434818..19434903 962..877 415 98.8 Minus
3L 28103327 3L 19434907..19434969 866..804 315 100 Minus
Blast to na_te.dros performed 2019-03-15 13:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1536..1626 612..524 117 63.4 Minus

SD02058.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:16:17 Download gff for SD02058.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19431112..19431269 805..971 92 <- Minus
chr3L 19431340..19431794 350..804 99 <- Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:22:02 Download gff for SD02058.complete
Subject Subject Range Query Range Percent Splice Strand
CG33062-RB 1..375 266..640 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:59:50 Download gff for SD02058.complete
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 1..375 266..640 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 18:12:50 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:26:00 Download gff for SD02058.complete
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 1..375 266..640 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:22:02 Download gff for SD02058.complete
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 1..955 1..962 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:59:50 Download gff for SD02058.complete
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 1..955 1..962 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 18:12:50 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:26:00 Download gff for SD02058.complete
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 1..954 1..961 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:16:17 Download gff for SD02058.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19441939..19442393 350..804 100 <- Minus
3L 19446035..19446383 1..349 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:16:17 Download gff for SD02058.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19441939..19442393 350..804 100 <- Minus
3L 19446035..19446383 1..349 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:16:17 Download gff for SD02058.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19441939..19442393 350..804 100 <- Minus
3L 19446035..19446383 1..349 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:59:50 Download gff for SD02058.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19435039..19435493 350..804 100 <- Minus
arm_3L 19439135..19439483 1..349 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:45:34 Download gff for SD02058.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19435039..19435493 350..804 100 <- Minus
3L 19439135..19439483 1..349 99   Minus

SD02058.pep Sequence

Translation from 265 to 639

> SD02058.pep
MDQLKLRPCNCLTAHPLAEWVWVECERLCTLRLASFRKGFSEKGCHRTPM
PIEDSWSKRFRHFPFVSACILWPRHGHLPLPTTLPQWKIQFSQSLLIFSS
LCGCLVCCTIRCCCCWPSRKSVKS*

SD02058.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-PB 124 CG33062-PB 1..124 1..124 720 100 Plus
CG33062-PA 124 CG33062-PA 1..124 1..124 720 100 Plus

SD02058.hyp Sequence

Translation from 265 to 639

> SD02058.hyp
MDQLKLRPCNCLTAHPLAEWVWVECERLCTLRLASFRKGFSEKGCHRTPM
PIEDSWSKRFRHFPFVSACILWPRHGHLPLPTTLPQWKIQFSQSLLIFSS
LCGCLVCCTIRCCCCWPSRKSVKS*

SD02058.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-PB 124 CG33062-PB 1..124 1..124 720 100 Plus
CG33062-PA 124 CG33062-PA 1..124 1..124 720 100 Plus