Clone SD02086 Report

Search the DGRC for SD02086

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:20
Well:86
Vector:pOT2
Associated Gene/TranscriptCG3548-RA
Protein status:SD02086.pep: gold
Preliminary Size:2155
Sequenced Size:2218

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3548 2001-01-01 Release 2 assignment
CG3548 2001-07-04 Blastp of sequenced clone
CG3548 2003-01-01 Sim4 clustering to Release 3
CG3548 2008-04-29 Release 5.5 accounting
CG3548 2008-08-15 Release 5.9 accounting
CG3548 2008-12-18 5.12 accounting

Clone Sequence Records

SD02086.complete Sequence

2218 bp (2218 high quality bases) assembled on 2001-07-04

GenBank Submission: AY050235

> SD02086.complete
CAGAAATCAAATAGGATTTTTGCAAGCCTGGGCATTCGAATCAGAATCCA
GCCAAAGCGAATCCAGTGTGTAAACAAAAACAATGAAACTGGAGGAGTTG
CTGACCAAGGGAGCCTCCTCTCCGCCGGAGGACGACGACGAGGACGAGAA
GGTGGAGCTGAAGCCGCAGAAGTCAAGCAGCGCCACCGCGGACGAGGGGG
CGGAGAACGCGGAGGATGCGGCCGAGGATGCTGGCGAGAAGGAAGGCGCG
GGTGGCAAGAAGAAGGGCACGCGCAAGAAACGCTCCCTTAACTGGGAGGA
GGCGGAAAGGGGGCTGCTCCTTGAGGTCATCAAGTCCAAGGTGGCCTTCG
TGGAGAACCGGAGCGTGGACGCCAAGAGCATAAAGGCCAAGCGTCTGGCC
TGGTCGCAGATCACCAAGCAGTTCAATGCCCTTAACTTCCGCCATCGCCT
GCTGGAGCAGATCCAGGTGCAGTGGCGCAGCATGAAGAACTCCGCCAAGC
GGGAGCACCAGCAGAAGCATCCGAAAACGGAGGCCCTGGAAGGCATGCGG
ATGATTGAGTTCCTGGAGGAGATGCAGAAGGATCCGGTCACCTCGCGCAG
TCAGACACGCAGCGCGAACACAAACGGCGCTCTTAAGAAGGAGCTCATGG
ACATCGACGAGGACGAAGACATGCCGCTGGCCGCTCTGCCCAACTCTACG
AACGCCAGCGAGGACACGCTGCAGACCTCCACAATAGCCATCCCCTCGCC
GCCGCCCTCCACTGCTGGCGGAGACGGGGACTCCCAGCAGGAGGGAAATC
CCGCCCAGCTGCCAGCCCAGCGACGCAAGCGGACCAAGGCCAAGCAGTCG
CCCTCGGGCGCCAAGACAGAAACGTCCGGCGAAACGGGGGAGGAGAACGA
AAAGGGCGTAGGCCCACCACGAAAGCGGCGACAAAGGAATCTCTCACAGG
CCCAGTCGCTGCTGTCCGACGAGAACGAAGCCTCCACCAACGCAGCTCCG
AGCGCCACCCCAGTTGCAGACACAAATAGCCAGTCCTTAGATTTGGTCGC
CGCCACGGAGATAGAGCAGAAGTACAAGCAGGACCTGTTTAGGCTGCTCA
AGCAGGCCCGTCTGGCCGAAATCGACTACGCCCGGCGGGAACACGAGCAG
AAGCTGCGCTTCGAGCAGATGGAGCAGGAGGTGAAGATGGCCTACTACCG
GCAGGAGCAGGACCTCAAGCTGCGGCACATGCGCGAGGAGCACGACATCC
GGCTGCGGCAGCAACGACGGGAGCACGAGGCGCGCCTGGGGATCTACTCG
CTGAAGAGCGGTGGCCTGAACGGAAGCATACAGGATCAGAGTTCAGCAAA
GTGCAATGCCAAAGCGGACTACAACAATGTCCACGAGGTCGGGCCATCGA
CCAGTGCGGAGGGGGCGCTGGCGCTCAATGCCGCCTGCAACTAGGGGCGT
GGCTGTTGGCCCATATGCATATACAATACGAAGAGAGCCAGCAATTAGGG
TGTAAGGCATTTAGAGGAAACATCAACAGTACTTTAAAATTTAGCTTGAA
ATATGTTTAGCGAAATGTAGCTCTTCCGGTCAGCCAGAGTAACCGGAAAC
GGAAACGTAAACGCCGGACGCGCATACAATACTCATCGACACACTCAAGT
TGCCACTCGGACGAATGGACTGTTGTTTATTGTGCAATTCGCACGAGACG
AACTCACAGGCATTGCATTTTCAAGAAATTAGTATTACATAATTGTATCC
GTATCTGTTAAGTACTCCGGGCGAAGAGATCAATTCAAAATGCGGTTGTG
TCGTCGAAAAAAAAACAAACTCGAAAATACTCATGCACAGACTCTGAATA
AGTTCCCCTTTGCAGAACGCAATTTACTCATCAGTCAGTATTCTCTATGG
CCACTGTATTATTTTTATACCTTCATTTGTTAGCTTTAAGTTTTTTTTAC
ACAACTACTACTTATACTTGTGCTGCCACCAGTTGGGCTGCCGTAGTTGC
AGATCAATGTATCCATTGTCCATACATTGCGAGAATCTTTTATAATTCGT
CTAAGCATAAGTTACTGTACGTCGTGTTGTATAGCGCTGTAATATCCTGT
CACCTGCTTCTGCTTAATTAATACCCTATATCGGGCGAGAGCAAGGTACG
ATTAAACCATTAGATAATGAAATACAAATACATAGTGTATAAACAGATGA
AAAAAAAAAAAAAAAAAA

SD02086.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-RA 2262 CG3548-RA 60..2260 1..2201 10990 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20486981..20488240 941..2199 6100 99.1 Plus
chr2R 21145070 chr2R 20486333..20486852 421..940 2570 99.6 Plus
chr2R 21145070 chr2R 20485838..20486259 1..422 2110 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:45:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24601109..24602369 941..2201 6305 100 Plus
2R 25286936 2R 24600461..24600980 421..940 2585 99.8 Plus
2R 25286936 2R 24599966..24600387 1..422 2110 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24602308..24603568 941..2201 6305 100 Plus
2R 25260384 2R 24601660..24602179 421..940 2585 99.8 Plus
2R 25260384 2R 24601165..24601586 1..422 2110 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:59:41 has no hits.

SD02086.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:00:34 Download gff for SD02086.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20485838..20486257 1..420 100 -> Plus
chr2R 20486333..20486852 421..940 99 -> Plus
chr2R 20486981..20488240 941..2199 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:57:12 Download gff for SD02086.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 1..1362 83..1444 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:13:27 Download gff for SD02086.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 1..1362 83..1444 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:35 Download gff for SD02086.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 1..1362 83..1444 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:44:42 Download gff for SD02086.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 1..1362 83..1444 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:51 Download gff for SD02086.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 1..1362 83..1444 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:06:06 Download gff for SD02086.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 1..2199 1..2199 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:13:26 Download gff for SD02086.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 1..2199 1..2199 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:35 Download gff for SD02086.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 20..2218 1..2199 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:44:42 Download gff for SD02086.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 1..2199 1..2199 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:51 Download gff for SD02086.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 20..2218 1..2199 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:00:34 Download gff for SD02086.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24599966..24600385 1..420 100 -> Plus
2R 24600461..24600980 421..940 99 -> Plus
2R 24601109..24602367 941..2199 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:00:34 Download gff for SD02086.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24599966..24600385 1..420 100 -> Plus
2R 24600461..24600980 421..940 99 -> Plus
2R 24601109..24602367 941..2199 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:00:34 Download gff for SD02086.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24599966..24600385 1..420 100 -> Plus
2R 24600461..24600980 421..940 99 -> Plus
2R 24601109..24602367 941..2199 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:35 Download gff for SD02086.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20487489..20487908 1..420 100 -> Plus
arm_2R 20487984..20488503 421..940 99 -> Plus
arm_2R 20488632..20489890 941..2199 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:22:26 Download gff for SD02086.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24601183..24601602 1..420 100 -> Plus
2R 24601678..24602197 421..940 99 -> Plus
2R 24602326..24603584 941..2199 100   Plus

SD02086.pep Sequence

Translation from 82 to 1443

> SD02086.pep
MKLEELLTKGASSPPEDDDEDEKVELKPQKSSSATADEGAENAEDAAEDA
GEKEGAGGKKKGTRKKRSLNWEEAERGLLLEVIKSKVAFVENRSVDAKSI
KAKRLAWSQITKQFNALNFRHRLLEQIQVQWRSMKNSAKREHQQKHPKTE
ALEGMRMIEFLEEMQKDPVTSRSQTRSANTNGALKKELMDIDEDEDMPLA
ALPNSTNASEDTLQTSTIAIPSPPPSTAGGDGDSQQEGNPAQLPAQRRKR
TKAKQSPSGAKTETSGETGEENEKGVGPPRKRRQRNLSQAQSLLSDENEA
STNAAPSATPVADTNSQSLDLVAATEIEQKYKQDLFRLLKQARLAEIDYA
RREHEQKLRFEQMEQEVKMAYYRQEQDLKLRHMREEHDIRLRQQRREHEA
RLGIYSLKSGGLNGSIQDQSSAKCNAKADYNNVHEVGPSTSAEGALALNA
ACN*

SD02086.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11792-PA 467 GF11792-PA 1..467 1..453 1782 80.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22988-PA 453 GG22988-PA 1..453 1..453 2340 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20008-PA 488 GH20008-PA 1..482 1..450 1294 66 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-PA 453 CG3548-PA 1..453 1..453 2292 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19189-PA 496 GI19189-PA 1..490 1..450 1324 66.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10227-PA 470 GL10227-PA 1..470 1..453 1781 78.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17515-PA 470 GA17515-PA 1..470 1..453 1779 77.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11882-PA 453 GM11882-PA 1..453 1..453 2369 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11880-PA 270 GD11880-PA 1..149 1..149 756 97.3 Plus
Dsim\GD11880-PA 270 GD11880-PA 154..270 337..453 620 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20252-PA 481 GJ20252-PA 1..474 1..449 1354 68.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19475-PA 471 GK19475-PA 1..471 1..453 1262 61.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14425-PA 453 GE14425-PA 1..453 1..453 2344 97.6 Plus

SD02086.hyp Sequence

Translation from 82 to 1443

> SD02086.hyp
MKLEELLTKGASSPPEDDDEDEKVELKPQKSSSATADEGAENAEDAAEDA
GEKEGAGGKKKGTRKKRSLNWEEAERGLLLEVIKSKVAFVENRSVDAKSI
KAKRLAWSQITKQFNALNFRHRLLEQIQVQWRSMKNSAKREHQQKHPKTE
ALEGMRMIEFLEEMQKDPVTSRSQTRSANTNGALKKELMDIDEDEDMPLA
ALPNSTNASEDTLQTSTIAIPSPPPSTAGGDGDSQQEGNPAQLPAQRRKR
TKAKQSPSGAKTETSGETGEENEKGVGPPRKRRQRNLSQAQSLLSDENEA
STNAAPSATPVADTNSQSLDLVAATEIEQKYKQDLFRLLKQARLAEIDYA
RREHEQKLRFEQMEQEVKMAYYRQEQDLKLRHMREEHDIRLRQQRREHEA
RLGIYSLKSGGLNGSIQDQSSAKCNAKADYNNVHEVGPSTSAEGALALNA
ACN*

SD02086.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-PA 453 CG3548-PA 1..453 1..453 2292 100 Plus