Clone SD02122 Report

Search the DGRC for SD02122

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:21
Well:22
Vector:pOT2
Associated Gene/TranscriptSMC1-RA
Protein status:SD02122.pep: gold
Preliminary Size:3784
Sequenced Size:3933

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6057 2001-01-01 Release 2 assignment
CG6057 2002-05-18 Blastp of sequenced clone
CG6057 2003-01-01 Sim4 clustering to Release 3
SMC1 2008-04-29 Release 5.5 accounting
SMC1 2008-08-15 Release 5.9 accounting
SMC1 2008-12-18 5.12 accounting

Clone Sequence Records

SD02122.complete Sequence

3933 bp (3933 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118636

> SD02122.complete
CGGATACGGTCATACTGTCATAAGAGAAAAAAAAATTATTTCGCGCTCAT
ATTGTTATTTTTCTTGGATATTTGTTGCAATCGAGCGTGTGAATGACCGA
AGAGGACGATGATGTGGCCCAAAGGGTGGCGACGGCGCCCGTCCGCAAGC
CGGACGACGAGACGGCCTTCCTGGAGTACATCGAAATGGAGAACTTCAAG
TCCTACCGCGGTCACATAGTTGTGGGTCCTCTGAAGCAATTCAACGCTGT
TATTGGGCCCAACGGATCAGGCAAGTCAAACTTCATGGATGCCATCAGTT
TCGTGATGGGCGAGAAGACCAGCAGTTTGCGAGTAAAGCGCCTGAACGAC
CTCATCCATGGCTCCTCCATTGGCAAGCCCGTTTCCCGCAGTTGCTACGT
GACCGCCAAATTTGTGCTGAACGAGGAGCGCCACATGGACTTCCAGAGGG
CTGTTATCGGCGGCTCCTCGGAATATCGTATCAATGGAGAGAGCGTATCG
AGCAGCACCTACTTGAACAAGCTGGAGAAAATTGGCATCAATGTTAAGGC
CAAGAACTTTTTAGTATTCCAGGGAGCTGTTGAGAACATAGCCATGAAGA
CACCCAAGGAACGCACTGCTCTATTTGAGGAAATAAGCGGTTCTGGTCTG
CTTAAGGACGACTATAATCGCCTTAAACAAGAAATGATTGTTGCCGAGGA
GGAGACCCAGTTTACTTACCAAAAGAAGAAGGGCATCGCGGCGGAACGAA
AAGAGGCCAAGCACGAGAAGATGGAAGCTGATCGCTACACTCGCCTGCAA
AACGAATACAATGAAAAACAAGTGGAGTATCAATTATTTAGGCTATTCCA
CGTGGAGAGGGACATCCGGAAGTTTACGAGCGATTTGGAGGTGAGGCAAC
AGGAAGTAAAAGCAGTCGAACAGCGGAAAGAAGCTGCCGATGAAATCTTG
CGCGAAAAGAAGAAAGACGCCGGAAAAATCACCCGAGACCTGGCCAAAAT
CGATCAGGAAATCAGAGAGTTTGAAACCCAGATGAACAAACGCAGGCCCC
TTTACATCAAGGCCAAAGAGAAAGTTACCCACTGCAAGAAGAAGCTCATT
TCCCTACAGAAGACTCTGGAAACAGCCAGGGAGGCGGACAATGCCCATCA
GTCGGACATACGGAAACTGGAGAAGCAGCTGGCTGATGTGGAGGCCCTGA
AAAAACGTTTCGAGGACGAGATCGAGAACGAGTCGCAGCGCCGCGGCAAA
AGCGTTAACATGGAAGAGGGCCTTGTGCAAGAGTACGATCGCCTGAAGCA
GGAGGCGGAAGCCACAGCTACGCAGTACCGTTCAGAGCTGGACTCAGTAA
ACCGGGAGCAAAAATCCGAACAGGACACGCTTGATGGGGAGACAAATCGT
CGCGCCTCCGTAGAGGAGTCCTTCAAGAAGCTCACATTACAGCGCGAGGA
AGCTGTAAAGCGTCGAGACAAACTGATGGATCACATCAAATCATCACAGG
CTGCCTTGGAGGAACAGAACCGGATCAAGGACGAGCTCCGGCGAGATGTT
GGCACATCCAAGGAGAAGATAGCCGAAAAGCAACGCGAATTGGAGGACGT
ACGCGATCAACTGGGCGATGCCAAGAGCGACAAGCACGAGGATGCTCGTA
GGAAAAAGAAGCAGGAGGTGGTGGAGCTCTTCAAAAAACAGGTTCCCGGA
GTGTACGACCGTATGATTAACATGTGTCAGCCGACGCATAAACGCTACAA
TGTGGCCGTCACCAAAGTTTTGGGAAAGTTCATGGAAGCCATTATTGTGG
ACACCGAGAAGACGGCTAGACACTGTATTCAGATCTTGAAGGAGCAAATG
CTGGAAGTGGAAACCTTCTTGCCCTTGGACTATCTGCAAGTTAAGCCTCT
GAAGGAACGACTTCGTAACATCAGCGACCCGCGGAACGTGCGATTGGTTT
TCGATGTACTAAAGTTTGAGCCTCAAGAGATCGAACGGGCTGTGCTCTTC
GCCACAGGCAATGCTCTCGTTTGTGAGACTCCCGAGGACGCCATGAAAGT
GGCCTACGAGATAGACCGATCACGTTTCGACGCTCTGGCCCTGGACGGAA
CATTCTACCAGAAATCGGGTCTCATATCTGGCGGTAGTCACGATCTGGCT
CGCAAAGCTAAGCGATGGGACGAGAAGCACATGGCTCAGCTGAAAATGCA
GAAGGAGCGCCTCCAAGAAGAGCTCAAGGAGCTGGTGAAAAAGTCACGTA
AGCAGAGTGAGCTCGCCACTGTGGAGTCGCAGATCAAGGGTCTTGAAAAC
AGGCTTAAATATAGTATGGTTGATTTGGAGTCCTCCAAGAAGTCAATTAG
TCAGTATGACAATCAGTTGCAGCAAGTCCAATCGCAGTTGGACGAATTTG
GACCCAAGATCCTTGAGATAGAGCGTCGTATGCAAAACCGCGAGGAGCAC
ATCCAGGAAATCAAAGAAAACATGAACAATGTGGAGGACAAAGTATATGC
CTCTTTCTGCCGTCGCTTGGGCGTGAAGAACATACGACAATACGAGGAGC
GTGAGCTCGTCATGCAGCAAGAGCGAGCGCGTAAACGGGCTGAGTTTGAG
CAGCAGATTGATTCCATAAACTCGCAGCTGGACTTCGAGAAACAGAAAGA
CACTAAAAAAAACGTTGAGCGCTGGGAGCGCAGCGTGCAGGATGAGGAAG
ATGCCCTAGAGGGACTCAAATTGGCTGAGGCACGCTATTTAAAGGAAATC
GACGAGGATAAGGAGAAAATGGAAAAATTCAAGCAGGACAAGCAGGCCAA
GAAGCAAGCCGTGGATGACATGGAAGAGGACATATCTAAAGCCCGCAAGG
ATGTGGCAAATTTGGCTAAGGAAATCCATAACGTGGGCAGTCATTTATCT
GCGGTAGAGTCTAAGATCGAGGCCAAGAAAAACGAACGTCAGAACATACT
GTTGCAAGCAAAAACCGATTGCATCGTGGTACCACTGTTGCGCGGCTCGC
TGGACGACGCAGTGCGACAAAGCGATCCGGATGTCCCATCCACCTCTGCA
GCGATGGAAAATATTATTGAAGTGGATTATTCATCTCTACCACGAGAGTA
TACCAAGCTGAAGGATGACTCCGCTTTCAAAAAGACCCACGAAATGCTTC
AAAAGGACCTGCAAAGCAAGCTGGACGTTTTGGAGCGCATACAGACGCCC
AACATGAAAGCACTGCAGAAACTCGATGCTGTAACGGAAAAAGTGCAATC
CACCAATGAGGAGTTTGAGAATGCGCGCAAGAAAGCAAAGAGGGCCAAGG
CGGCATTTGAACGGGTTAAGAACGAACGCTCCTCGCGCTTCGTTGCGTGT
TGCCAGCACATATCGGATGCCATTGACGGTATCTACAAGAAATTGGCTCG
CAACGAGGCAGCCCAGGCTTATATCGGTCCCGACAATCCTGAGGAACCAT
ATCTAGATGGTATTAACTATAATTGTGTGGCGCCAGGCAAACGTTTCCAA
CCCATGAACAACTTGAGTGGTGGCGAAAAAACAATAGCAGCCTTGGCTCT
GCTCTTCTCGACCCACAGCTTTCATCCAGCGCCTTTCTTTGTCCTTGACG
AGATTGATGCCGCCTTGGACAACACGAATATTGGCAAAGTCGCTTCGTAT
ATAAGGGATCACACAACCAACCTGCAAACCATCGTCATTTCCCTGAAGGA
AGAGTTCTATGGTCATGCTGATGCTCTTGTGGGCATTACGCCTGGGGAAG
GCGACTGTCTCGTATCAAATGTTTACATAATGGACTTGACAACGTTCGAG
GACACGTAAAGTTCATATGTCGGATGTATTTTAAGTATTAGATGTAACTT
TAAAGTAAATCTCGGGATTTCCAATTAATAAAGCCAGTAAATGTGTAGAC
GTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD02122.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
SMC1-RA 4276 SMC1-RA 190..4091 1..3903 18980 99.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19882688..19883715 805..1832 5065 99.5 Plus
chr3R 27901430 chr3R 19883777..19884348 1831..2402 2860 100 Plus
chr3R 27901430 chr3R 19885254..19885757 3065..3568 2520 100 Plus
chr3R 27901430 chr3R 19881713..19882203 1..491 2440 99.8 Plus
chr3R 27901430 chr3R 19884727..19885031 2659..2963 1525 100 Plus
chr3R 27901430 chr3R 19884415..19884670 2403..2658 1280 100 Plus
chr3R 27901430 chr3R 19885815..19885996 3566..3747 910 100 Plus
chr3R 27901430 chr3R 19882465..19882634 640..809 850 100 Plus
chr3R 27901430 chr3R 19886056..19886212 3746..3902 785 100 Plus
chr3R 27901430 chr3R 19882257..19882407 490..640 740 99.3 Plus
chr3R 27901430 chr3R 19885088..19885188 2964..3064 505 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:45:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24059284..24060311 805..1832 5035 99.3 Plus
3R 32079331 3R 24060373..24060944 1831..2402 2785 99.1 Plus
3R 32079331 3R 24061857..24062360 3065..3568 2430 98.8 Plus
3R 32079331 3R 24058310..24058799 1..491 2375 99.4 Plus
3R 32079331 3R 24061323..24061627 2659..2963 1480 99 Plus
3R 32079331 3R 24061011..24061266 2403..2658 1250 99.2 Plus
3R 32079331 3R 24062418..24062599 3566..3747 895 99.5 Plus
3R 32079331 3R 24059061..24059230 640..809 775 97.1 Plus
3R 32079331 3R 24062659..24062816 3746..3903 775 99.4 Plus
3R 32079331 3R 24058853..24059003 490..640 725 98.7 Plus
3R 32079331 3R 24061691..24061791 2964..3064 505 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23800115..23801142 805..1832 5035 99.3 Plus
3R 31820162 3R 23801204..23801775 1831..2402 2785 99.1 Plus
3R 31820162 3R 23802688..23803191 3065..3568 2430 98.8 Plus
3R 31820162 3R 23799141..23799630 1..491 2385 99.3 Plus
3R 31820162 3R 23802154..23802458 2659..2963 1480 99 Plus
3R 31820162 3R 23801842..23802097 2403..2658 1250 99.2 Plus
3R 31820162 3R 23803249..23803430 3566..3747 895 99.4 Plus
3R 31820162 3R 23803490..23803647 3746..3903 775 99.3 Plus
3R 31820162 3R 23799892..23800061 640..809 775 97 Plus
3R 31820162 3R 23799684..23799834 490..640 725 98.6 Plus
3R 31820162 3R 23802522..23802622 2964..3064 505 100 Plus
Blast to na_te.dros performed 2019-03-16 20:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 1611..1652 69..28 120 76.2 Minus

SD02122.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:54:43 Download gff for SD02122.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19885088..19885188 2964..3064 100 -> Plus
chr3R 19881713..19882203 1..491 99 -> Plus
chr3R 19882259..19882407 492..640 99 -> Plus
chr3R 19882466..19882634 641..809 100 -> Plus
chr3R 19882693..19883715 810..1832 99 -> Plus
chr3R 19883779..19884348 1833..2402 100 -> Plus
chr3R 19884415..19884670 2403..2658 100 -> Plus
chr3R 19884727..19885031 2659..2963 100 -> Plus
chr3R 19885254..19885757 3065..3568 100 -> Plus
chr3R 19885818..19885995 3569..3746 100 -> Plus
chr3R 19886057..19886212 3747..3902 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:57:17 Download gff for SD02122.complete
Subject Subject Range Query Range Percent Splice Strand
SMC1-RA 1..3717 93..3809 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:52:53 Download gff for SD02122.complete
Subject Subject Range Query Range Percent Splice Strand
SMC1-RA 1..3717 93..3809 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:42:27 Download gff for SD02122.complete
Subject Subject Range Query Range Percent Splice Strand
SMC1-RA 1..3717 93..3809 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:35:19 Download gff for SD02122.complete
Subject Subject Range Query Range Percent Splice Strand
SMC1-RA 1..3717 93..3809 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:56 Download gff for SD02122.complete
Subject Subject Range Query Range Percent Splice Strand
SMC1-RA 1..3717 93..3809 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:04:52 Download gff for SD02122.complete
Subject Subject Range Query Range Percent Splice Strand
SMC1-RA 9..3909 1..3902 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:52:53 Download gff for SD02122.complete
Subject Subject Range Query Range Percent Splice Strand
SMC1-RA 9..3909 1..3902 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:27 Download gff for SD02122.complete
Subject Subject Range Query Range Percent Splice Strand
SMC1-RA 24..3924 1..3902 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:35:20 Download gff for SD02122.complete
Subject Subject Range Query Range Percent Splice Strand
SMC1-RA 9..3909 1..3902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:56 Download gff for SD02122.complete
Subject Subject Range Query Range Percent Splice Strand
SMC1-RA 24..3924 1..3902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:43 Download gff for SD02122.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24062660..24062815 3747..3902 99   Plus
3R 24058310..24058799 1..491 99 -> Plus
3R 24058855..24059003 492..640 98 -> Plus
3R 24059062..24059230 641..809 97 -> Plus
3R 24059289..24060311 810..1832 99 -> Plus
3R 24060375..24060944 1833..2402 99 -> Plus
3R 24061011..24061266 2403..2658 99 -> Plus
3R 24061323..24061627 2659..2963 99 -> Plus
3R 24061691..24061791 2964..3064 100 -> Plus
3R 24061857..24062360 3065..3568 98 -> Plus
3R 24062421..24062598 3569..3746 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:43 Download gff for SD02122.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24062660..24062815 3747..3902 99   Plus
3R 24058310..24058799 1..491 99 -> Plus
3R 24058855..24059003 492..640 98 -> Plus
3R 24059062..24059230 641..809 97 -> Plus
3R 24059289..24060311 810..1832 99 -> Plus
3R 24060375..24060944 1833..2402 99 -> Plus
3R 24061011..24061266 2403..2658 99 -> Plus
3R 24061323..24061627 2659..2963 99 -> Plus
3R 24061691..24061791 2964..3064 100 -> Plus
3R 24061857..24062360 3065..3568 98 -> Plus
3R 24062421..24062598 3569..3746 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:43 Download gff for SD02122.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24062660..24062815 3747..3902 99   Plus
3R 24058310..24058799 1..491 99 -> Plus
3R 24058855..24059003 492..640 98 -> Plus
3R 24059062..24059230 641..809 97 -> Plus
3R 24059289..24060311 810..1832 99 -> Plus
3R 24060375..24060944 1833..2402 99 -> Plus
3R 24061011..24061266 2403..2658 99 -> Plus
3R 24061323..24061627 2659..2963 99 -> Plus
3R 24061691..24061791 2964..3064 100 -> Plus
3R 24061857..24062360 3065..3568 98 -> Plus
3R 24062421..24062598 3569..3746 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:27 Download gff for SD02122.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19884032..19884521 1..491 99 -> Plus
arm_3R 19884577..19884725 492..640 98 -> Plus
arm_3R 19884784..19884952 641..809 97 -> Plus
arm_3R 19885011..19886033 810..1832 99 -> Plus
arm_3R 19886097..19886666 1833..2402 99 -> Plus
arm_3R 19886733..19886988 2403..2658 99 -> Plus
arm_3R 19887045..19887349 2659..2963 99 -> Plus
arm_3R 19887413..19887513 2964..3064 100 -> Plus
arm_3R 19887579..19888082 3065..3568 98 -> Plus
arm_3R 19888143..19888320 3569..3746 99 -> Plus
arm_3R 19888382..19888537 3747..3902 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:17:30 Download gff for SD02122.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23802522..23802622 2964..3064 100 -> Plus
3R 23799141..23799630 1..491 99 -> Plus
3R 23799686..23799834 492..640 98 -> Plus
3R 23799893..23800061 641..809 97 -> Plus
3R 23800120..23801142 810..1832 99 -> Plus
3R 23801206..23801775 1833..2402 99 -> Plus
3R 23801842..23802097 2403..2658 99 -> Plus
3R 23802154..23802458 2659..2963 99 -> Plus
3R 23802688..23803191 3065..3568 98 -> Plus
3R 23803252..23803429 3569..3746 99 -> Plus
3R 23803491..23803646 3747..3902 99   Plus

SD02122.pep Sequence

Translation from 92 to 3808

> SD02122.pep
MTEEDDDVAQRVATAPVRKPDDETAFLEYIEMENFKSYRGHIVVGPLKQF
NAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLNDLIHGSSIGKPVSRS
CYVTAKFVLNEERHMDFQRAVIGGSSEYRINGESVSSSTYLNKLEKIGIN
VKAKNFLVFQGAVENIAMKTPKERTALFEEISGSGLLKDDYNRLKQEMIV
AEEETQFTYQKKKGIAAERKEAKHEKMEADRYTRLQNEYNEKQVEYQLFR
LFHVERDIRKFTSDLEVRQQEVKAVEQRKEAADEILREKKKDAGKITRDL
AKIDQEIREFETQMNKRRPLYIKAKEKVTHCKKKLISLQKTLETAREADN
AHQSDIRKLEKQLADVEALKKRFEDEIENESQRRGKSVNMEEGLVQEYDR
LKQEAEATATQYRSELDSVNREQKSEQDTLDGETNRRASVEESFKKLTLQ
REEAVKRRDKLMDHIKSSQAALEEQNRIKDELRRDVGTSKEKIAEKQREL
EDVRDQLGDAKSDKHEDARRKKKQEVVELFKKQVPGVYDRMINMCQPTHK
RYNVAVTKVLGKFMEAIIVDTEKTARHCIQILKEQMLEVETFLPLDYLQV
KPLKERLRNISDPRNVRLVFDVLKFEPQEIERAVLFATGNALVCETPEDA
MKVAYEIDRSRFDALALDGTFYQKSGLISGGSHDLARKAKRWDEKHMAQL
KMQKERLQEELKELVKKSRKQSELATVESQIKGLENRLKYSMVDLESSKK
SISQYDNQLQQVQSQLDEFGPKILEIERRMQNREEHIQEIKENMNNVEDK
VYASFCRRLGVKNIRQYEERELVMQQERARKRAEFEQQIDSINSQLDFEK
QKDTKKNVERWERSVQDEEDALEGLKLAEARYLKEIDEDKEKMEKFKQDK
QAKKQAVDDMEEDISKARKDVANLAKEIHNVGSHLSAVESKIEAKKNERQ
NILLQAKTDCIVVPLLRGSLDDAVRQSDPDVPSTSAAMENIIEVDYSSLP
REYTKLKDDSAFKKTHEMLQKDLQSKLDVLERIQTPNMKALQKLDAVTEK
VQSTNEEFENARKKAKRAKAAFERVKNERSSRFVACCQHISDAIDGIYKK
LARNEAAQAYIGPDNPEEPYLDGINYNCVAPGKRFQPMNNLSGGEKTIAA
LALLFSTHSFHPAPFFVLDEIDAALDNTNIGKVASYIRDHTTNLQTIVIS
LKEEFYGHADALVGITPGEGDCLVSNVYIMDLTTFEDT*

SD02122.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23004-PA 1236 GF23004-PA 1..1235 1..1237 6183 94.4 Plus
Dana\GF24329-PA 1404 GF24329-PA 85..1268 34..1215 624 24.1 Plus
Dana\GF21472-PA 1190 GF21472-PA 587..1162 591..1215 225 23.6 Plus
Dana\GF19780-PA 434 GF19780-PA 52..422 852..1225 221 25.3 Plus
Dana\GF11775-PA 688 GF11775-PA 2..628 26..644 197 22.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11251-PA 1238 GG11251-PA 1..1238 1..1238 6541 99 Plus
Dere\GG20110-PA 1409 GG20110-PA 96..1301 34..1234 678 25.9 Plus
Dere\GG22392-PA 1179 GG22392-PA 2..1162 26..1220 390 22.5 Plus
Dere\GG18245-PA 1200 GG18245-PA 587..1172 591..1215 222 22.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18490-PA 1240 GH18490-PA 1..1239 1..1237 5926 91.5 Plus
Dgri\GH10207-PA 1348 GH10207-PA 89..1273 34..1215 549 22.5 Plus
Dgri\GH20475-PA 1176 GH20475-PA 1049..1167 1106..1225 190 32.5 Plus
Dgri\GH17849-PA 1200 GH17849-PA 6..165 30..184 190 32.1 Plus
Dgri\GH17849-PA 1200 GH17849-PA 1080..1172 1123..1215 174 36.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
SMC1-PA 1238 CG6057-PA 1..1238 1..1238 6248 100 Plus
glu-PA 1409 CG11397-PA 96..1280 34..1215 896 25.7 Plus
SMC2-PA 1179 CG10212-PA 2..1176 26..1234 601 22.2 Plus
SMC3-PA 1200 CG9802-PA 3..1172 27..1215 552 22.4 Plus
Mhc-PU 1949 CG17927-PU 970..1873 188..1078 339 19.7 Plus
Mhc-PN 1949 CG17927-PN 970..1873 188..1078 339 19.7 Plus
Mhc-PE 1962 CG17927-PE 970..1873 188..1078 339 19.7 Plus
Mhc-PH 1962 CG17927-PH 970..1873 188..1078 339 19.7 Plus
Mhc-PT 1962 CG17927-PT 970..1873 188..1078 339 19.7 Plus
Mhc-PO 1962 CG17927-PO 970..1873 188..1078 339 19.7 Plus
Mhc-PF 1962 CG17927-PF 970..1873 188..1078 339 19.7 Plus
Mhc-PQ 1962 CG17927-PQ 970..1873 188..1078 339 19.7 Plus
Mhc-PI 1962 CG17927-PI 970..1873 188..1078 339 19.7 Plus
Mhc-PG 1962 CG17927-PG 970..1873 188..1078 339 19.7 Plus
Mhc-PA 1962 CG17927-PA 970..1873 188..1078 339 19.7 Plus
Mhc-PD 1962 CG17927-PD 970..1873 188..1078 339 19.7 Plus
Mhc-PC 1962 CG17927-PC 970..1873 188..1078 339 19.7 Plus
Mhc-PR 1962 CG17927-PR 970..1873 188..1078 339 19.7 Plus
zip-PH 1964 CG15792-PH 976..1948 143..1110 266 20.2 Plus
zip-PG 1971 CG15792-PG 968..1903 143..1074 265 20.2 Plus
zip-PE 1971 CG15792-PE 968..1903 143..1074 265 20.2 Plus
zip-PC 1971 CG15792-PC 968..1903 143..1074 265 20.2 Plus
zip-PF 1979 CG15792-PF 976..1911 143..1074 265 20.2 Plus
zip-PB 2011 CG15792-PB 1008..1943 143..1074 265 20.2 Plus
zip-PD 2016 CG15792-PD 1013..1948 143..1074 265 20.2 Plus
zip-PI 2024 CG15792-PI 1021..1956 143..1074 265 20.2 Plus
zip-PA 2056 CG15792-PA 1053..1988 143..1074 265 20.2 Plus
zip-PG 1971 CG15792-PG 1184..1930 179..932 263 19.6 Plus
zip-PE 1971 CG15792-PE 1184..1930 179..932 263 19.6 Plus
zip-PC 1971 CG15792-PC 1184..1930 179..932 263 19.6 Plus
zip-PF 1979 CG15792-PF 1192..1938 179..932 263 19.6 Plus
zip-PB 2011 CG15792-PB 1224..1970 179..932 263 19.6 Plus
zip-PD 2016 CG15792-PD 1229..1975 179..932 263 19.6 Plus
zip-PI 2024 CG15792-PI 1237..1983 179..932 263 19.6 Plus
zip-PA 2056 CG15792-PA 1269..2015 179..932 263 19.6 Plus
Strn-Mlck-PT 7905 CG44162-PT 3461..4378 189..1080 260 18.9 Plus
Strn-Mlck-PV 7944 CG44162-PV 3500..4417 189..1080 260 18.9 Plus
Strn-Mlck-PS 8216 CG44162-PS 3461..4378 189..1080 260 18.9 Plus
Strn-Mlck-PU 8255 CG44162-PU 3500..4417 189..1080 260 18.9 Plus
CLIP-190-PN 1598 CG5020-PN 583..1435 193..1079 259 20.4 Plus
CLIP-190-PR 1601 CG5020-PR 586..1438 193..1079 259 20.4 Plus
CLIP-190-PP 1623 CG5020-PP 608..1460 193..1079 259 20.4 Plus
CLIP-190-PC 1652 CG5020-PC 637..1489 193..1079 259 20.4 Plus
CLIP-190-PS 1653 CG5020-PS 638..1490 193..1079 259 20.4 Plus
CLIP-190-PM 1668 CG5020-PM 653..1505 193..1079 259 20.4 Plus
CLIP-190-PB 1689 CG5020-PB 674..1526 193..1079 259 20.4 Plus
CLIP-190-PA 1690 CG5020-PA 675..1527 193..1079 259 20.4 Plus
Mhc-PU 1949 CG17927-PU 840..1709 240..1110 258 18.5 Plus
Mhc-PN 1949 CG17927-PN 840..1709 240..1110 258 18.5 Plus
Mhc-PE 1962 CG17927-PE 840..1709 240..1110 258 18.5 Plus
Mhc-PH 1962 CG17927-PH 840..1709 240..1110 258 18.5 Plus
Mhc-PT 1962 CG17927-PT 840..1709 240..1110 258 18.5 Plus
Mhc-PO 1962 CG17927-PO 840..1709 240..1110 258 18.5 Plus
Mhc-PF 1962 CG17927-PF 840..1709 240..1110 258 18.5 Plus
Mhc-PQ 1962 CG17927-PQ 840..1709 240..1110 258 18.5 Plus
Mhc-PI 1962 CG17927-PI 840..1709 240..1110 258 18.5 Plus
Mhc-PG 1962 CG17927-PG 840..1709 240..1110 258 18.5 Plus
Mhc-PA 1962 CG17927-PA 840..1709 240..1110 258 18.5 Plus
Mhc-PD 1962 CG17927-PD 840..1709 240..1110 258 18.5 Plus
Mhc-PC 1962 CG17927-PC 840..1709 240..1110 258 18.5 Plus
Mhc-PR 1962 CG17927-PR 840..1709 240..1110 258 18.5 Plus
Mhc-PL 1936 CG17927-PL 844..1767 187..1078 248 19.9 Plus
Mhc-PM 1936 CG17927-PM 844..1767 187..1078 248 19.9 Plus
Mhc-PK 1936 CG17927-PK 844..1767 187..1078 248 19.9 Plus
Mhc-PP 1949 CG17927-PP 844..1767 187..1078 248 19.9 Plus
Mhc-PV 1962 CG17927-PV 844..1767 187..1078 248 19.9 Plus
Mhc-PS 1962 CG17927-PS 844..1767 187..1078 248 19.9 Plus
Mhc-PB 1962 CG17927-PB 844..1767 187..1078 248 19.9 Plus
Golgin245-PA 1489 CG3493-PA 295..1136 218..1066 244 19.1 Plus
mud-PI 2113 CG12047-PI 1168..1889 187..952 244 22.2 Plus
mud-PJ 2165 CG12047-PJ 1168..1889 187..952 244 22.2 Plus
mud-PH 2567 CG12047-PH 1168..1889 187..952 244 22.2 Plus
mud-PG 1933 CG12047-PG 1168..1885 187..948 241 22.3 Plus
zip-PH 1964 CG15792-PH 857..1572 391..1073 234 20.9 Plus
zip-PG 1971 CG15792-PG 849..1564 391..1073 234 20.9 Plus
zip-PE 1971 CG15792-PE 849..1564 391..1073 234 20.9 Plus
zip-PC 1971 CG15792-PC 849..1564 391..1073 234 20.9 Plus
zip-PF 1979 CG15792-PF 857..1572 391..1073 234 20.9 Plus
zip-PB 2011 CG15792-PB 889..1604 391..1073 234 20.9 Plus
zip-PD 2016 CG15792-PD 894..1609 391..1073 234 20.9 Plus
zip-PI 2024 CG15792-PI 902..1617 391..1073 234 20.9 Plus
zip-PA 2056 CG15792-PA 934..1649 391..1073 234 20.9 Plus
Strn-Mlck-PT 7905 CG44162-PT 3822..4722 164..1069 231 20.7 Plus
Strn-Mlck-PV 7944 CG44162-PV 3861..4761 164..1069 231 20.7 Plus
Strn-Mlck-PS 8216 CG44162-PS 3822..4722 164..1069 231 20.7 Plus
Strn-Mlck-PU 8255 CG44162-PU 3861..4761 164..1069 231 20.7 Plus
zip-PH 1964 CG15792-PH 861..1692 235..1073 230 20 Plus
zip-PG 1971 CG15792-PG 853..1684 235..1073 230 20 Plus
zip-PE 1971 CG15792-PE 853..1684 235..1073 230 20 Plus
zip-PC 1971 CG15792-PC 853..1684 235..1073 230 20 Plus
zip-PF 1979 CG15792-PF 861..1692 235..1073 230 20 Plus
zip-PB 2011 CG15792-PB 893..1724 235..1073 230 20 Plus
zip-PD 2016 CG15792-PD 898..1729 235..1073 230 20 Plus
zip-PI 2024 CG15792-PI 906..1737 235..1073 230 20 Plus
zip-PA 2056 CG15792-PA 938..1769 235..1073 230 20 Plus
zip-PH 1964 CG15792-PH 1191..1953 127..891 216 19.6 Plus
zip-PG 1971 CG15792-PG 1183..1923 127..856 212 19.7 Plus
zip-PE 1971 CG15792-PE 1183..1923 127..856 212 19.7 Plus
zip-PC 1971 CG15792-PC 1183..1923 127..856 212 19.7 Plus
zip-PF 1979 CG15792-PF 1191..1931 127..856 212 19.7 Plus
zip-PB 2011 CG15792-PB 1223..1963 127..856 212 19.7 Plus
zip-PD 2016 CG15792-PD 1228..1968 127..856 212 19.7 Plus
zip-PI 2024 CG15792-PI 1236..1976 127..856 212 19.7 Plus
zip-PA 2056 CG15792-PA 1268..2008 127..856 212 19.7 Plus
mud-PI 2113 CG12047-PI 796..1657 253..1089 212 19.1 Plus
mud-PJ 2165 CG12047-PJ 796..1657 253..1089 212 19.1 Plus
mud-PH 2567 CG12047-PH 796..1657 253..1089 212 19.1 Plus
mud-PG 1933 CG12047-PG 796..1657 253..1089 212 19.1 Plus
mud-PI 2113 CG12047-PI 1264..2002 160..990 205 19.8 Plus
mud-PJ 2165 CG12047-PJ 1264..2002 160..990 205 19.8 Plus
mud-PH 2567 CG12047-PH 1264..2002 160..990 205 19.8 Plus
CLIP-190-PN 1598 CG5020-PN 267..1369 199..1105 201 18.7 Plus
CLIP-190-PP 1623 CG5020-PP 292..1394 199..1105 201 18.7 Plus
CLIP-190-PC 1652 CG5020-PC 321..1423 199..1105 201 18.7 Plus
CLIP-190-PS 1653 CG5020-PS 359..1424 199..1105 201 19 Plus
CLIP-190-PM 1668 CG5020-PM 337..1439 199..1105 201 18.7 Plus
CLIP-190-PB 1689 CG5020-PB 358..1460 199..1105 201 18.7 Plus
CLIP-190-PA 1690 CG5020-PA 359..1461 199..1105 201 18.7 Plus
Strn-Mlck-PT 7905 CG44162-PT 2894..3728 191..1080 200 18 Plus
Strn-Mlck-PV 7944 CG44162-PV 2933..3767 191..1080 200 18 Plus
Strn-Mlck-PS 8216 CG44162-PS 2894..3728 191..1080 200 18 Plus
Strn-Mlck-PU 8255 CG44162-PU 2933..3767 191..1080 200 18 Plus
Golgin245-PA 1489 CG3493-PA 728..1418 150..840 199 19.8 Plus
Mhc-PU 1949 CG17927-PU 1305..1922 135..772 198 20.1 Plus
Mhc-PN 1949 CG17927-PN 1305..1922 135..772 198 20.1 Plus
Mhc-PE 1962 CG17927-PE 1305..1922 135..772 198 20.1 Plus
Mhc-PH 1962 CG17927-PH 1305..1922 135..772 198 20.1 Plus
Mhc-PT 1962 CG17927-PT 1305..1922 135..772 198 20.1 Plus
Mhc-PO 1962 CG17927-PO 1305..1922 135..772 198 20.1 Plus
Mhc-PF 1962 CG17927-PF 1305..1922 135..772 198 20.1 Plus
Mhc-PQ 1962 CG17927-PQ 1305..1922 135..772 198 20.1 Plus
Mhc-PI 1962 CG17927-PI 1305..1922 135..772 198 20.1 Plus
Mhc-PG 1962 CG17927-PG 1305..1922 135..772 198 20.1 Plus
Mhc-PA 1962 CG17927-PA 1305..1922 135..772 198 20.1 Plus
Mhc-PD 1962 CG17927-PD 1305..1922 135..772 198 20.1 Plus
Mhc-PC 1962 CG17927-PC 1305..1922 135..772 198 20.1 Plus
Mhc-PR 1962 CG17927-PR 1305..1922 135..772 198 20.1 Plus
Mhc-PL 1936 CG17927-PL 1305..1922 135..772 198 20.1 Plus
Mhc-PM 1936 CG17927-PM 1305..1922 135..772 198 20.1 Plus
Mhc-PK 1936 CG17927-PK 1305..1922 135..772 198 20.1 Plus
Mhc-PP 1949 CG17927-PP 1305..1922 135..772 198 20.1 Plus
Mhc-PV 1962 CG17927-PV 1305..1922 135..772 198 20.1 Plus
Mhc-PS 1962 CG17927-PS 1305..1922 135..772 198 20.1 Plus
Mhc-PB 1962 CG17927-PB 1305..1922 135..772 198 20.1 Plus
CLIP-190-PR 1601 CG5020-PR 247..1372 169..1105 197 18.5 Plus
Mhc-PL 1936 CG17927-PL 1132..1918 111..855 183 20.2 Plus
Mhc-PM 1936 CG17927-PM 1132..1918 111..855 183 20.2 Plus
Mhc-PK 1936 CG17927-PK 1132..1918 111..855 183 20.2 Plus
Mhc-PP 1949 CG17927-PP 1132..1918 111..855 183 20.2 Plus
Mhc-PV 1962 CG17927-PV 1132..1918 111..855 183 20.2 Plus
Mhc-PS 1962 CG17927-PS 1132..1918 111..855 183 20.2 Plus
Mhc-PB 1962 CG17927-PB 1132..1918 111..855 183 20.2 Plus
mud-PG 1933 CG12047-PG 1264..1877 160..874 174 19.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24164-PA 1240 GI24164-PA 1..1239 1..1237 5978 92.2 Plus
Dmoj\GI14952-PA 1396 GI14952-PA 1116..1271 1058..1215 258 31.6 Plus
Dmoj\GI21017-PA 1177 GI21017-PA 517..1154 531..1212 253 21 Plus
Dmoj\GI10989-PA 1200 GI10989-PA 6..165 30..184 198 32.7 Plus
Dmoj\GI10989-PA 1200 GI10989-PA 1080..1172 1123..1215 175 36.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23399-PA 1235 GL23399-PA 1..1235 1..1238 6097 92.7 Plus
Dper\GL10652-PA 1181 GL10652-PA 2..1167 26..1225 406 23.7 Plus
Dper\GL19756-PA 232 GL19756-PA 6..165 30..184 185 33.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19328-PA 1238 GA19328-PA 1..1238 1..1238 6150 93.4 Plus
Dpse\GA25921-PB 986 GA25921-PB 91..761 34..687 462 26.2 Plus
Dpse\GA10161-PA 1181 GA10161-PA 2..1167 26..1225 427 23.7 Plus
Dpse\GA25922-PA 387 GA25922-PA 98..253 1058..1215 262 33.5 Plus
Dpse\GA22046-PA 1200 GA22046-PA 1080..1172 1123..1215 169 35.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26555-PA 1194 GM26555-PA 1..1194 1..1238 6273 96.2 Plus
Dsec\GM17160-PA 1409 GM17160-PA 96..1280 34..1215 664 25 Plus
Dsec\GM20175-PA 1179 GM20175-PA 2..1162 26..1220 404 23.5 Plus
Dsec\GM13388-PA 1180 GM13388-PA 1060..1152 1123..1215 175 36.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21062-PA 800 GD21062-PA 1..800 434..1238 4225 98.8 Plus
Dsim\GD21061-PA 429 GD21061-PA 1..421 1..421 2203 99.3 Plus
Dsim\GD21899-PA 1136 GD21899-PA 96..878 34..788 424 25.6 Plus
Dsim\GD25652-PA 1179 GD25652-PA 2..1163 26..1220 408 23.4 Plus
Dsim\GD21899-PA 1136 GD21899-PA 909..1006 1118..1215 261 43.9 Plus
Dsim\GD15741-PA 1032 GD15741-PA 917..1004 1130..1215 174 38.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14197-PA 1240 GJ14197-PA 1..1239 1..1237 5998 92.5 Plus
Dvir\GJ24094-PA 1390 GJ24094-PA 1130..1271 1072..1215 257 33.3 Plus
Dvir\GJ21940-PA 1177 GJ21940-PA 536..1154 553..1212 253 21.4 Plus
Dvir\GJ19101-PA 1130 GJ19101-PA 6..165 30..184 197 32.7 Plus
Dvir\GJ19101-PA 1130 GJ19101-PA 1010..1102 1123..1215 173 36.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11152-PA 1237 GK11152-PA 1..1236 1..1237 6130 92.2 Plus
Dwil\GK23290-PA 1180 GK23290-PA 2..1154 26..1212 398 22.7 Plus
Dwil\GK21116-PA 1329 GK21116-PA 1128..1269 1072..1215 276 35.4 Plus
Dwil\GK25447-PA 1201 GK25447-PA 1081..1173 1123..1215 171 35.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23444-PA 1238 GE23444-PA 1..1238 1..1238 6513 98.5 Plus
Dyak\GE13167-PA 1410 GE13167-PA 96..1301 34..1234 658 25.3 Plus
Dyak\GE12281-PA 1179 GE12281-PA 536..1162 553..1220 276 22.8 Plus
Dyak\GE15959-PA 1200 GE15959-PA 587..1172 591..1215 223 22.3 Plus

SD02122.hyp Sequence

Translation from 92 to 3808

> SD02122.hyp
MTEEDDDVAQRVATAPVRKPDDETAFLEYIEMENFKSYRGHIVVGPLKQF
NAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLNDLIHGSSIGKPVSRS
CYVTAKFVLNEERHMDFQRAVIGGSSEYRINGESVSSSTYLNKLEKIGIN
VKAKNFLVFQGAVENIAMKTPKERTALFEEISGSGLLKDDYNRLKQEMIV
AEEETQFTYQKKKGIAAERKEAKHEKMEADRYTRLQNEYNEKQVEYQLFR
LFHVERDIRKFTSDLEVRQQEVKAVEQRKEAADEILREKKKDAGKITRDL
AKIDQEIREFETQMNKRRPLYIKAKEKVTHCKKKLISLQKTLETAREADN
AHQSDIRKLEKQLADVEALKKRFEDEIENESQRRGKSVNMEEGLVQEYDR
LKQEAEATATQYRSELDSVNREQKSEQDTLDGETNRRASVEESFKKLTLQ
REEAVKRRDKLMDHIKSSQAALEEQNRIKDELRRDVGTSKEKIAEKQREL
EDVRDQLGDAKSDKHEDARRKKKQEVVELFKKQVPGVYDRMINMCQPTHK
RYNVAVTKVLGKFMEAIIVDTEKTARHCIQILKEQMLEVETFLPLDYLQV
KPLKERLRNISDPRNVRLVFDVLKFEPQEIERAVLFATGNALVCETPEDA
MKVAYEIDRSRFDALALDGTFYQKSGLISGGSHDLARKAKRWDEKHMAQL
KMQKERLQEELKELVKKSRKQSELATVESQIKGLENRLKYSMVDLESSKK
SISQYDNQLQQVQSQLDEFGPKILEIERRMQNREEHIQEIKENMNNVEDK
VYASFCRRLGVKNIRQYEERELVMQQERARKRAEFEQQIDSINSQLDFEK
QKDTKKNVERWERSVQDEEDALEGLKLAEARYLKEIDEDKEKMEKFKQDK
QAKKQAVDDMEEDISKARKDVANLAKEIHNVGSHLSAVESKIEAKKNERQ
NILLQAKTDCIVVPLLRGSLDDAVRQSDPDVPSTSAAMENIIEVDYSSLP
REYTKLKDDSAFKKTHEMLQKDLQSKLDVLERIQTPNMKALQKLDAVTEK
VQSTNEEFENARKKAKRAKAAFERVKNERSSRFVACCQHISDAIDGIYKK
LARNEAAQAYIGPDNPEEPYLDGINYNCVAPGKRFQPMNNLSGGEKTIAA
LALLFSTHSFHPAPFFVLDEIDAALDNTNIGKVASYIRDHTTNLQTIVIS
LKEEFYGHADALVGITPGEGDCLVSNVYIMDLTTFEDT*

SD02122.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
SMC1-PA 1238 CG6057-PA 1..1238 1..1238 6248 100 Plus
glu-PA 1409 CG11397-PA 96..1280 34..1215 896 25.7 Plus
SMC2-PA 1179 CG10212-PA 2..1176 26..1234 601 22.2 Plus
SMC3-PA 1200 CG9802-PA 3..1172 27..1215 552 22.4 Plus
zip-PG 1971 CG15792-PG 968..1903 143..1074 265 20.2 Plus