Clone SD02170 Report

Search the DGRC for SD02170

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:21
Well:70
Vector:pOT2
Associated Gene/TranscriptPde8-RA
Protein status:SD02170.pep: gold
Preliminary Size:3865
Sequenced Size:3923

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5411 2004-01-13 Blastp of sequenced clone
Pde8 2008-04-29 Release 5.5 accounting
Pde8 2008-08-15 Release 5.9 accounting
Pde8 2008-12-18 5.12 accounting

Clone Sequence Records

SD02170.complete Sequence

3923 bp (3923 high quality bases) assembled on 2004-01-13

GenBank Submission: BT011336

> SD02170.complete
CAGCGCGCACACCACAGCCGTATATTTAGATATAGATACACACACACAGC
CACACGCACTGGCACTGGCACACGGACACAGCGATTTCGTCCCGCTTTCT
GGCCAAAGCAACCGACTTTGGCTTTGGCTTTAGCTTTAGCTTTGGCCCAC
ATCGTGTCTATCTAGTGCCATCGGGCATCGGTTAAAGCCAGAAGCTGAAC
CGCAATCACAATCGCGGCCAGCACGCTTTTCCAGTGGGAAAACATTTCGG
CAGTGAATGCACGTTGATTTTTTATCGGTCCGCTATCCGCAATCCGCAAT
CCGCCGTTGTGATTTGTGCTTTAACCCACAAACTGTCCACCGAACTGGAG
TGAACGGAGGTCGTGTTTTCCGTGAAGGTGAAGGCCTCTAATCCTAAGGC
TCTGTTGGCCAGTTATCCGGATCATGTGACCAGTATCTCCGCTGGCCATC
AGTCAATCAATCAGCAGACCGCAGCCCAAAAATGTTTCAATTATGTTATC
GCCAGCAACAACGACATCGTCCAGAATCGAAAGCATCGAACCAGAGCAGC
AGCAACCACAAGAAGGCAGCCGCACTGTCCAGGACGAAGGAGTAAGACGT
GCAATTCCGCAAAGGCTAAATCCGGATACGGAACCGGAGCCCACTGCAAA
ACCGAAATCACAAGGCAACCAAGAGCAATTTAGCATAGCAACCGCAACGC
AATCAGCCAGGCCAGGATCAGAAGCAGGACTTCTTAGCCATGGGCTGTTC
TCCGAGTACTTTGCCCCCCGCCCCTTCCGCTGGTCAGACCGGCGAACGAG
GATCCCTGCCGCTGGACGCCTCTGAAAAGGACGAGAGCCGCCTCTTCTGC
ATCAAGCTGCGGCGCAGCCGCCTGCGCCGCTGCAGCTGTGGGGGCGTGAC
CTTGCAGCCCCCCAGCGACGGGAATGGCAGCACGGCCGGAGACAACCTGT
GCGGCCAGGTGCTCCTCAATCCGCTGCAGACCAAGAGCGAGGCCGACTAC
GAAAAGCTGAGCACCGGCAAAAAGGACTCGATTGTGACGGTGGCCGCCCT
GGGCAACTTTACACACAGCGTAGTGCGACGGGCCACTGGAAGCACAGGCA
CATCGGGCACCAGTTCATCCGGCGGGAACAGCCGTCCAGGTCACCGCAAG
TCATCACTAGCCCTCGCTCTCACCCCGGAAGATGAGCCGATGGACGTCTA
CCAGCGAAATCTCATGGACCTGAAGTATCCAACCGTGCTACCACCGAATC
CCCCACTTAAGGCCCTCCTGGTTTTCCACAAGTCGGACAGCATCTGCGAG
GCGATCACCGCGGCCTGCCAGCGCCACCAGCTGGACGTTACGCTGGTCAA
GTCCAAGGAGGAGGCCCTGGACACCCTGCAGAAGTCGTACGCCACCGCCC
AGTGCTACCACCTAATCATAATTGATGCGCGCTCCTCCAAGAACCTGGAT
GCGGAGCACATTGCGAGAACCATTCGTCACACACACGGCCACCATTTAAC
GACAATAATTGCAGTCTGCAAGAAGAGTTTCTTCGAAAAGGATGATGTGC
TAATTGCTCTATTGGACGCTGGCGTTAATAGATGCGTAGCGGAGACGACC
AACCTGGCCATGTGCAGTGTGGAACTGAAGCAGATACTGCACTCCATCAT
CCGGCCGCACAATGTCATGTCCACTCAACAGGCCCTCTACACGGCTCTGC
ATCGGCTAAAGGAGGTGGTGCTCATCACGGACGACTTGCTGCGGATTCAG
TACGCGAACCGTGCCACCGAGAGGCTGCTCAACATGCGGCTGGACGAGAT
CATTAGCAAGCAGCTGGAGGACATATTCGTGTCGGACCTCTCCACCATCA
GCGAGCAGTGCAAGAACATCAAGGAGTTCGATGGCATTCTGACGGTGCGT
CGCAAGAGCCAGGAGGGCATACCCATGCACGTGCGCGTCGTGCCGGTGGC
CTGCATAGGCAGCGCCCCCACGCACCTGATTTTCAACTTTGATGTGCCCG
GCGGGCAGATGGACTTCATAGCCACGCTGCCGCAGCCCAAGGAGGCGCCT
CGGGGCTCCCTGCACTCGGTGCGGCGCTGCAGCTTTGATGTCCGCTCCAT
CGCCTCGGACGGATTGCGGAGGACGAGCTTGGCCAAGCTGACGTCGCTGC
CACTGGAGGCACCCATCACTAAAATAATTAATTTACTATCACAAGTACAG
GAGAATTGTTCGGCCGATGAGGCGCGTCTCATAGACAAGGTCTTGGAGTT
CCTGAAGCGTGAGGGACTCTACAGTCCGCAGATGAAGGAGATACGAACGG
ACGATCCCATAGCCACCGATCTAATCGGTGCCCTGCTAACGGGTCCCAGC
GTGTACTCATCGCGCCGCAGCTCGAATGACTCCATCATACGCACTGGCAG
CTCCACGAGAACTGCCGCCATTGTGCCCGCCAAAATGAAGTCCAATCCCA
TCATCATGGAACTACTTGACGAATCTCTCAGCTGGGACTTTGATATTTTC
AAATTGGAGGAGATCACCGACTACCACCCGCTGCTCTACCTGGGCATGGA
GATGTTCCGCCGCTTCGACGTCTTTGCCACCCTGAACATCGATGAGAACG
TGTGCAAGGCGTGGTTGGCAGTGATCGAAGCCCACTACCGCAAGAGCAAC
ACATATCACAACAGCACCCATGCCGCGGATGTGATGCAGGCCACTGGCGC
TTTCATCACCCAACTAACCAACAAGGATATGCTAGTGATGGATCGCATGG
AGGAGGCGACTGCCTTGATCGCCGCCGCCGCCCACGATGTGGATCATCCT
GGTCGCTCATCCGCCTTCTTGTGCAACTCCAACGACGCCCTGGCCGTTCT
ATACAATGATCTGACTGTGCTGGAGAACCATCACGCGGCAATCACCTTTA
AGCTAACACTGGGCGACGACAAGATCAACATTTTCAAGAACCTGGACAAG
GAGACGTACAAGTCGGCACGCAGCACCATCATCGACATGATCCTGGCCAC
CGAGATGACCCGCCACTTTGAGCACCTGGCCAAATTCGTGAGCGTTTTTG
GCGGCGAGGAGCCGCGTGATCACAATCCCCAAACGGATGAGGAGACGTCC
ATACTCATGCGTCGCATGCTGATCAAGGTGGCCGATGTGAGCAATCCCGC
CAGGCCGATGCAATTCTGCATCGAGTGGGCCCGCCGCATAGCCGAGGAGT
ACTTCATGCAGACGGACGAGGAGAAGCAGCGCCACCTGCCCATCGTGATG
CCGATGTTCGATCGGGCCACCTGCAGCATACCAAAGAGCCAGATCGGCTT
CATCGAATACATCATACAGGACATGATGCACGCCTGGGAGAGCTTCATCG
ACATGCCACAGCTGATCACCTACATGCAGATCAACTACTCGCAATGGAAG
AAGTACGACGAGCAGGGCGTCAACACGCTGGCGGAGATCATGGCCAAGCA
GCCACCGGTGGGCAAGATGGCCAACTCCAAATAGCATACGGCCTTCCGGA
GATTGTTCTCGGGTCTACTGAAGCCACTGCCGGCCCACGCGCCAGGTACC
TCCACGATTGGCGAGAACGAGATGGAGGACGTGCTCTAGTGACGGCGTCG
AAGGTCCTGCGACGTCTGACTCCGGACCCGCAGTCTCTCGGCCTAATCCT
CCCACTGAAGTCGCAGCTCATCACGGCTTGACGCCCACCCGAGTCCACCC
GCTCCCTGGACTGCCCCACACTTATCTCTGAACGGACCAACGGACTGGGG
GCGGTTGGCCCGAAATGGGCGGCTGGCTGGCTTACGAAGTGGTGCCCTGT
GCGGTGTCACAAATGCGGTATCATGCAAAGCAAAACTAACTAAGGCAAAC
AAGTAAACAATTATTGGGCTGGACTCAAAATTAAATGTTTAAGATGCATC
ACAAGAAAAAAAAAAAAAAAAAA

SD02170.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8.h 5761 Pde8.h 90..3990 1..3907 19175 99.4 Plus
Pde8.g 4262 Pde8.g 90..3990 1..3907 19175 99.4 Plus
Pde8.f 4910 Pde8.f 90..3990 1..3907 19175 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19551485..19552081 410..1006 2985 100 Plus
chr2R 21145070 chr2R 19564749..19565312 3342..3905 2790 99.6 Plus
chr2R 21145070 chr2R 19543816..19544224 1..412 1980 99.3 Plus
chr2R 21145070 chr2R 19564420..19564691 3071..3342 1315 98.9 Plus
chr2R 21145070 chr2R 19563605..19563856 2439..2690 1260 100 Plus
chr2R 21145070 chr2R 19563915..19564140 2688..2913 1115 99.6 Plus
chr2R 21145070 chr2R 19561979..19562192 1960..2173 1070 100 Plus
chr2R 21145070 chr2R 19560616..19560823 1260..1467 1040 100 Plus
chr2R 21145070 chr2R 19563223..19563391 2174..2342 815 98.8 Plus
chr2R 21145070 chr2R 19561742..19561912 1792..1962 810 98.2 Plus
chr2R 21145070 chr2R 19564203..19564361 2912..3070 750 98.1 Plus
chr2R 21145070 chr2R 19561556..19561670 1679..1793 575 100 Plus
chr2R 21145070 chr2R 19558175..19558287 1092..1204 565 100 Plus
chr2R 21145070 chr2R 19561311..19561410 1583..1682 500 100 Plus
chr2R 21145070 chr2R 19563450..19563549 2341..2440 500 100 Plus
chr2R 21145070 chr2R 19552143..19552230 1005..1092 440 100 Plus
chr2R 21145070 chr2R 19561005..19561066 1466..1527 310 100 Plus
chr2R 21145070 chr2R 19560491..19560551 1202..1262 305 100 Plus
chr2R 21145070 chr2R 19561133..19561189 1526..1582 285 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:45:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23665291..23665887 410..1006 2985 100 Plus
2R 25286936 2R 23678547..23679113 3342..3907 2785 99.8 Plus
2R 25286936 2R 23657610..23658014 1..412 1920 98.3 Plus
2R 25286936 2R 23678218..23678489 3071..3342 1330 99.3 Plus
2R 25286936 2R 23677403..23677654 2439..2690 1245 99.6 Plus
2R 25286936 2R 23677713..23677938 2688..2913 1100 99.1 Plus
2R 25286936 2R 23675775..23675988 1960..2173 1070 100 Plus
2R 25286936 2R 23674412..23674619 1260..1467 1010 99 Plus
2R 25286936 2R 23677021..23677189 2174..2342 830 99.4 Plus
2R 25286936 2R 23675538..23675708 1792..1962 825 98.8 Plus
2R 25286936 2R 23678001..23678159 2912..3070 750 98.1 Plus
2R 25286936 2R 23675352..23675466 1679..1793 575 100 Plus
2R 25286936 2R 23671976..23672088 1092..1204 565 100 Plus
2R 25286936 2R 23675107..23675206 1583..1682 500 100 Plus
2R 25286936 2R 23677248..23677347 2341..2440 500 100 Plus
2R 25286936 2R 23665949..23666036 1005..1092 440 100 Plus
2R 25286936 2R 23674802..23674863 1466..1527 310 100 Plus
2R 25286936 2R 23674283..23674343 1202..1262 305 100 Plus
2R 25286936 2R 23674929..23674985 1526..1582 285 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23666490..23667086 410..1006 2985 100 Plus
2R 25260384 2R 23679746..23680312 3342..3907 2795 99.8 Plus
2R 25260384 2R 23658809..23659105 1..297 1485 100 Plus
2R 25260384 2R 23679417..23679688 3071..3342 1330 99.2 Plus
2R 25260384 2R 23678602..23678853 2439..2690 1245 99.6 Plus
2R 25260384 2R 23678912..23679137 2688..2913 1100 99.1 Plus
2R 25260384 2R 23676974..23677187 1960..2173 1070 100 Plus
2R 25260384 2R 23675611..23675818 1260..1467 1010 99 Plus
2R 25260384 2R 23678220..23678388 2174..2342 830 99.4 Plus
2R 25260384 2R 23676737..23676907 1792..1962 825 98.8 Plus
2R 25260384 2R 23679200..23679358 2912..3070 750 98.1 Plus
2R 25260384 2R 23659087..23659213 286..412 620 99.2 Plus
2R 25260384 2R 23676551..23676665 1679..1793 575 100 Plus
2R 25260384 2R 23673175..23673287 1092..1204 565 100 Plus
2R 25260384 2R 23678447..23678546 2341..2440 500 100 Plus
2R 25260384 2R 23676306..23676405 1583..1682 500 100 Plus
2R 25260384 2R 23667148..23667235 1005..1092 440 100 Plus
2R 25260384 2R 23676001..23676062 1466..1527 310 100 Plus
2R 25260384 2R 23675482..23675542 1202..1262 305 100 Plus
2R 25260384 2R 23676128..23676184 1526..1582 285 100 Plus
Blast to na_te.dros performed 2019-03-16 14:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6871 503..588 136 68.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2537 503..667 123 57.7 Plus

SD02170.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:50:39 Download gff for SD02170.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19561135..19561189 1528..1582 100 -> Plus
chr2R 19561311..19561409 1583..1681 100 -> Plus
chr2R 19561559..19561669 1682..1792 100 -> Plus
chr2R 19561743..19561912 1793..1962 98 -> Plus
chr2R 19563223..19563390 2174..2341 98 -> Plus
chr2R 19563451..19563549 2342..2440 100 -> Plus
chr2R 19561982..19562192 1963..2173 100 -> Plus
chr2R 19560618..19560823 1262..1467 100 -> Plus
chr2R 19561007..19561066 1468..1527 100 -> Plus
chr2R 19543816..19544224 1..412 99 -> Plus
chr2R 19551488..19552081 413..1006 100 -> Plus
chr2R 19552145..19552229 1007..1091 100 -> Plus
chr2R 19558175..19558287 1092..1204 100 -> Plus
chr2R 19560494..19560550 1205..1261 100 -> Plus
chr2R 19563607..19563855 2441..2689 100 -> Plus
chr2R 19563917..19564139 2690..2912 99 -> Plus
chr2R 19564204..19564361 2913..3070 98 -> Plus
chr2R 19564420..19564690 3071..3341 98 -> Plus
chr2R 19564749..19565312 3342..3905 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:48:30 Download gff for SD02170.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RA 1..2745 740..3484 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:42:27 Download gff for SD02170.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RI 1..2745 740..3484 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:00:08 Download gff for SD02170.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RN 1..2850 740..3589 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:31:17 Download gff for SD02170.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RA 1..2745 740..3484 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:32:57 Download gff for SD02170.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RN 1..2850 740..3589 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:29 Download gff for SD02170.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RA 35..3933 1..3905 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:42:27 Download gff for SD02170.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RA 35..3930 1..3902 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:08 Download gff for SD02170.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RA 44..3939 1..3902 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:31:18 Download gff for SD02170.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RA 35..3933 1..3905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:57 Download gff for SD02170.complete
Subject Subject Range Query Range Percent Splice Strand
Pde8-RA 44..3939 1..3902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:50:39 Download gff for SD02170.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23657610..23658014 1..412 98 -> Plus
2R 23665294..23665887 413..1006 100 -> Plus
2R 23665951..23666035 1007..1091 100 -> Plus
2R 23671976..23672088 1092..1204 100 -> Plus
2R 23674286..23674342 1205..1261 100 -> Plus
2R 23674414..23674619 1262..1467 99 -> Plus
2R 23674804..23674863 1468..1527 100 -> Plus
2R 23674931..23674985 1528..1582 100 -> Plus
2R 23675107..23675205 1583..1681 100 -> Plus
2R 23675355..23675465 1682..1792 100 -> Plus
2R 23675539..23675708 1793..1962 98 -> Plus
2R 23675778..23675988 1963..2173 100 -> Plus
2R 23677021..23677188 2174..2341 99 -> Plus
2R 23677249..23677347 2342..2440 100 -> Plus
2R 23677405..23677653 2441..2689 99 -> Plus
2R 23677715..23677937 2690..2912 99 -> Plus
2R 23678002..23678159 2913..3070 98 -> Plus
2R 23678218..23678488 3071..3341 99 -> Plus
2R 23678547..23679111 3342..3905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:50:39 Download gff for SD02170.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23657610..23658014 1..412 98 -> Plus
2R 23665294..23665887 413..1006 100 -> Plus
2R 23665951..23666035 1007..1091 100 -> Plus
2R 23671976..23672088 1092..1204 100 -> Plus
2R 23674286..23674342 1205..1261 100 -> Plus
2R 23674414..23674619 1262..1467 99 -> Plus
2R 23674804..23674863 1468..1527 100 -> Plus
2R 23674931..23674985 1528..1582 100 -> Plus
2R 23675107..23675205 1583..1681 100 -> Plus
2R 23675355..23675465 1682..1792 100 -> Plus
2R 23675539..23675708 1793..1962 98 -> Plus
2R 23675778..23675988 1963..2173 100 -> Plus
2R 23677021..23677188 2174..2341 99 -> Plus
2R 23677249..23677347 2342..2440 100 -> Plus
2R 23677405..23677653 2441..2689 99 -> Plus
2R 23677715..23677937 2690..2912 99 -> Plus
2R 23678002..23678159 2913..3070 98 -> Plus
2R 23678218..23678488 3071..3341 99 -> Plus
2R 23678547..23679111 3342..3905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:50:39 Download gff for SD02170.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23657610..23658014 1..412 98 -> Plus
2R 23665294..23665887 413..1006 100 -> Plus
2R 23665951..23666035 1007..1091 100 -> Plus
2R 23671976..23672088 1092..1204 100 -> Plus
2R 23674286..23674342 1205..1261 100 -> Plus
2R 23674414..23674619 1262..1467 99 -> Plus
2R 23674804..23674863 1468..1527 100 -> Plus
2R 23674931..23674985 1528..1582 100 -> Plus
2R 23675107..23675205 1583..1681 100 -> Plus
2R 23675355..23675465 1682..1792 100 -> Plus
2R 23675539..23675708 1793..1962 98 -> Plus
2R 23675778..23675988 1963..2173 100 -> Plus
2R 23677021..23677188 2174..2341 99 -> Plus
2R 23677249..23677347 2342..2440 100 -> Plus
2R 23677405..23677653 2441..2689 99 -> Plus
2R 23677715..23677937 2690..2912 99 -> Plus
2R 23678002..23678159 2913..3070 98 -> Plus
2R 23678218..23678488 3071..3341 99 -> Plus
2R 23678547..23679111 3342..3905 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:08 Download gff for SD02170.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19564772..19564870 2342..2440 100 -> Plus
arm_2R 19565238..19565460 2690..2912 99 -> Plus
arm_2R 19565525..19565682 2913..3070 98 -> Plus
arm_2R 19564928..19565176 2441..2689 99 -> Plus
arm_2R 19545133..19545537 1..412 98 -> Plus
arm_2R 19552817..19553410 413..1006 100 -> Plus
arm_2R 19553474..19553558 1007..1091 100 -> Plus
arm_2R 19559499..19559611 1092..1204 100 -> Plus
arm_2R 19561809..19561865 1205..1261 100 -> Plus
arm_2R 19561937..19562142 1262..1467 99 -> Plus
arm_2R 19562327..19562386 1468..1527 100 -> Plus
arm_2R 19562454..19562508 1528..1582 100 -> Plus
arm_2R 19562630..19562728 1583..1681 100 -> Plus
arm_2R 19562878..19562988 1682..1792 100 -> Plus
arm_2R 19563062..19563231 1793..1962 98 -> Plus
arm_2R 19563301..19563511 1963..2173 100 -> Plus
arm_2R 19564544..19564711 2174..2341 99 -> Plus
arm_2R 19565741..19566011 3071..3341 99 -> Plus
arm_2R 19566070..19566634 3342..3905 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:03:50 Download gff for SD02170.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23673193..23673305 1092..1204 100 -> Plus
2R 23675503..23675559 1205..1261 100 -> Plus
2R 23675631..23675836 1262..1467 99 -> Plus
2R 23676021..23676080 1468..1527 100 -> Plus
2R 23676148..23676202 1528..1582 100 -> Plus
2R 23676324..23676422 1583..1681 100 -> Plus
2R 23676572..23676682 1682..1792 100 -> Plus
2R 23676756..23676925 1793..1962 98 -> Plus
2R 23676995..23677205 1963..2173 100 -> Plus
2R 23678238..23678405 2174..2341 99 -> Plus
2R 23678466..23678564 2342..2440 100 -> Plus
2R 23678622..23678870 2441..2689 99 -> Plus
2R 23678932..23679154 2690..2912 99 -> Plus
2R 23679219..23679376 2913..3070 98 -> Plus
2R 23679435..23679705 3071..3341 99 -> Plus
2R 23679764..23680328 3342..3905 99   Plus
2R 23658827..23659231 1..412 98 -> Plus
2R 23666511..23667104 413..1006 100 -> Plus
2R 23667168..23667252 1007..1091 100 -> Plus

SD02170.pep Sequence

Translation from 739 to 3483

> SD02170.pep
MGCSPSTLPPAPSAGQTGERGSLPLDASEKDESRLFCIKLRRSRLRRCSC
GGVTLQPPSDGNGSTAGDNLCGQVLLNPLQTKSEADYEKLSTGKKDSIVT
VAALGNFTHSVVRRATGSTGTSGTSSSGGNSRPGHRKSSLALALTPEDEP
MDVYQRNLMDLKYPTVLPPNPPLKALLVFHKSDSICEAITAACQRHQLDV
TLVKSKEEALDTLQKSYATAQCYHLIIIDARSSKNLDAEHIARTIRHTHG
HHLTTIIAVCKKSFFEKDDVLIALLDAGVNRCVAETTNLAMCSVELKQIL
HSIIRPHNVMSTQQALYTALHRLKEVVLITDDLLRIQYANRATERLLNMR
LDEIISKQLEDIFVSDLSTISEQCKNIKEFDGILTVRRKSQEGIPMHVRV
VPVACIGSAPTHLIFNFDVPGGQMDFIATLPQPKEAPRGSLHSVRRCSFD
VRSIASDGLRRTSLAKLTSLPLEAPITKIINLLSQVQENCSADEARLIDK
VLEFLKREGLYSPQMKEIRTDDPIATDLIGALLTGPSVYSSRRSSNDSII
RTGSSTRTAAIVPAKMKSNPIIMELLDESLSWDFDIFKLEEITDYHPLLY
LGMEMFRRFDVFATLNIDENVCKAWLAVIEAHYRKSNTYHNSTHAADVMQ
ATGAFITQLTNKDMLVMDRMEEATALIAAAAHDVDHPGRSSAFLCNSNDA
LAVLYNDLTVLENHHAAITFKLTLGDDKINIFKNLDKETYKSARSTIIDM
ILATEMTRHFEHLAKFVSVFGGEEPRDHNPQTDEETSILMRRMLIKVADV
SNPARPMQFCIEWARRIAEEYFMQTDEEKQRHLPIVMPMFDRATCSIPKS
QIGFIEYIIQDMMHAWESFIDMPQLITYMQINYSQWKKYDEQGVNTLAEI
MAKQPPVGKMANSK*

SD02170.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13070-PA 926 GF13070-PA 1..926 1..914 4432 94.1 Plus
Dana\GF19605-PA 999 GF19605-PA 594..886 575..872 481 36 Plus
Dana\GF23391-PA 606 GF23391-PA 94..444 514..863 411 30.4 Plus
Dana\GF20888-PA 889 GF20888-PA 4..261 605..875 361 34.7 Plus
Dana\GF17478-PA 1158 GF17478-PA 710..957 603..858 261 30.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22873-PA 905 GG22873-PA 1..905 1..914 4860 98.8 Plus
Dere\GG18654-PA 662 GG18654-PA 259..552 575..870 482 35.5 Plus
Dere\GG10295-PA 601 GG10295-PA 96..456 514..876 409 29.9 Plus
Dere\GG19538-PA 984 GG19538-PA 70..358 598..887 367 33 Plus
Dere\GG21262-PA 1131 GG21262-PA 695..942 603..858 260 30.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20665-PA 921 GH20665-PA 1..921 1..914 4107 86.2 Plus
Dgri\GH24693-PA 811 GH24693-PA 418..710 575..872 483 36 Plus
Dgri\GH13071-PA 517 GH13071-PA 108..394 566..863 417 33.9 Plus
Dgri\GH24569-PA 971 GH24569-PA 59..323 598..875 374 34.9 Plus
Dgri\GH14135-PA 1078 GH14135-PA 634..881 603..858 254 30 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8-PK 914 CG45019-PK 1..914 1..914 4699 100 Plus
Pde8-PI 914 CG45019-PI 1..914 1..914 4699 100 Plus
Pde8-PN 949 CG45019-PN 1..914 1..914 4699 100 Plus
Pde8-PA 914 CG45019-PA 1..914 1..914 4699 100 Plus
Pde8-PE 905 CG45019-PE 1..905 1..914 4639 99 Plus
Pde8-PD 805 CG45019-PD 1..805 111..914 4098 99.4 Plus
Pde8-PB 904 CG45019-PB 11..904 2..914 4096 89.5 Plus
Pde8-PO 1050 CG45019-PO 145..1050 13..914 3921 86.8 Plus
Pde8-PC 400 CG45019-PC 1..400 515..914 2074 100 Plus
dnc-PL 521 CG32498-PL 118..411 575..870 469 35.2 Plus
dnc-PP 642 CG32498-PP 239..532 575..870 469 35.2 Plus
dnc-PE 642 CG32498-PE 239..532 575..870 469 35.2 Plus
dnc-PF 662 CG32498-PF 259..552 575..870 469 35.2 Plus
dnc-PA 701 CG32498-PA 298..591 575..870 469 35.2 Plus
dnc-PR 703 CG32498-PR 300..593 575..870 469 35.2 Plus
dnc-PQ 703 CG32498-PQ 300..593 575..870 469 35.2 Plus
dnc-PU 715 CG32498-PU 312..605 575..870 469 35.2 Plus
dnc-PT 715 CG32498-PT 312..605 575..870 469 35.2 Plus
dnc-PG 814 CG32498-PG 411..704 575..870 469 35.2 Plus
dnc-PN 983 CG32498-PN 580..873 575..870 469 35.2 Plus
dnc-PC 1057 CG32498-PC 654..947 575..870 469 35.2 Plus
dnc-PD 1068 CG32498-PD 665..958 575..870 469 35.2 Plus
dnc-PJ 1070 CG32498-PJ 667..960 575..870 469 35.2 Plus
dnc-PI 1070 CG32498-PI 667..960 575..870 469 35.2 Plus
dnc-PS 1209 CG32498-PS 806..1099 575..870 469 35.2 Plus
dnc-PB 1209 CG32498-PB 806..1099 575..870 469 35.2 Plus
Pde1c-PK 1009 CG44007-PK 485..864 483..872 407 28 Plus
Pde1c-PH 952 CG44007-PH 428..807 495..872 404 28.3 Plus
Pde1c-PC 605 CG44007-PC 101..460 514..872 403 28.8 Plus
Pde1c-PG 834 CG44007-PG 330..689 514..872 403 28.8 Plus
Pde1c-PB 834 CG44007-PB 330..689 514..872 403 28.8 Plus
Pde1c-PL 855 CG44007-PL 351..710 514..872 403 28.8 Plus
Pde1c-PD 1137 CG44007-PD 633..992 514..872 403 28.8 Plus
Pde1c-PJ 1158 CG44007-PJ 654..1013 514..872 403 28.8 Plus
Pde1c-PE 1173 CG44007-PE 669..1028 514..872 403 28.8 Plus
Pde9-PB 1526 CG42276-PB 699..955 598..865 355 34.7 Plus
Pde9-PF 1526 CG42276-PF 699..955 598..865 355 34.7 Plus
Pde9-PE 1526 CG42276-PE 699..955 598..865 355 34.7 Plus
Pde9-PD 1623 CG42276-PD 699..955 598..865 355 34.7 Plus
Pde6-PD 1118 CG8279-PD 682..929 603..858 260 30 Plus
Pde6-PB 1118 CG8279-PB 682..929 603..858 260 30 Plus
Pde6-PC 1124 CG8279-PC 682..929 603..858 260 30 Plus
Pde11-PE 1117 CG34341-PE 780..1056 603..886 230 26.6 Plus
Pde11-PD 1161 CG34341-PD 824..1100 603..886 230 26.6 Plus
Pde11-PG 1407 CG34341-PG 780..1056 603..886 230 26.6 Plus
Pde11-PC 1407 CG34341-PC 780..1056 603..886 230 26.6 Plus
Pde11-PF 1451 CG34341-PF 824..1100 603..886 230 26.6 Plus
Pde11-PB 1451 CG34341-PB 824..1100 603..886 230 26.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19028-PA 952 GI19028-PA 1..950 1..913 4041 83.8 Plus
Dmoj\GI17690-PA 572 GI17690-PA 159..445 566..863 410 33.9 Plus
Dmoj\GI11066-PA 1039 GI11066-PA 66..330 598..875 369 34.9 Plus
Dmoj\GI10668-PA 1116 GI10668-PA 681..928 603..858 258 29.9 Plus
Dmoj\GI17200-PA 1241 GI17200-PA 616..901 603..896 236 27.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16875-PA 1333 GL16875-PA 581..1333 153..914 3879 94.9 Plus
Dper\GL15274-PA 589 GL15274-PA 147..445 547..863 419 32.8 Plus
Dper\GL19963-PA 342 GL19963-PA 2..228 642..870 389 37.6 Plus
Dper\GL22965-PA 1036 GL22965-PA 105..393 598..887 368 33 Plus
Dper\GL16875-PA 1333 GL16875-PA 1..137 1..117 354 66.7 Plus
Dper\GL14120-PA 151 GL14120-PA 43..138 33..118 292 77.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18863-PB 928 GA18863-PB 1..928 1..914 4318 89.9 Plus
Dpse\GA18863-PC 918 GA18863-PC 134..918 130..914 4060 96.1 Plus
Dpse\GA18863-PD 400 GA18863-PD 1..400 515..914 2061 95.2 Plus
Dpse\GA28567-PA 624 GA28567-PA 220..512 575..872 481 36 Plus
Dpse\GA13368-PA 538 GA13368-PA 96..394 547..863 416 32.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16033-PA 914 GM16033-PA 1..914 1..914 4927 99.9 Plus
Dsec\GM19267-PA 1204 GM19267-PA 801..1093 575..872 490 36 Plus
Dsec\GM10946-PA 605 GM10946-PA 101..461 514..876 409 29.9 Plus
Dsec\GM11531-PA 968 GM11531-PA 70..334 598..875 366 34.2 Plus
Dsec\GM17084-PA 1366 GM17084-PA 735..1011 603..886 233 27 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11781-PA 840 GD11781-PA 530..840 604..914 1714 99.4 Plus
Dsim\GD11781-PA 840 GD11781-PA 414..550 147..284 601 83.3 Plus
Dsim\GD16638-PA 862 GD16638-PA 553..847 575..874 494 36.2 Plus
Dsim\GD22155-PA 603 GD22155-PA 99..459 514..876 409 29.9 Plus
Dsim\GD20415-PA 1143 GD20415-PA 707..954 603..858 260 29.9 Plus
Dsim\GD21829-PA 1366 GD21829-PA 737..1013 603..886 233 27 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19994-PA 956 GJ19994-PA 1..956 1..914 4062 84.1 Plus
Dvir\GJ15306-PA 649 GJ15306-PA 251..543 575..872 487 36.3 Plus
Dvir\GJ17476-PA 513 GJ17476-PA 108..394 566..863 415 34.2 Plus
Dvir\GJ16925-PA 948 GJ16925-PA 60..348 598..887 368 32.8 Plus
Dvir\GJ23019-PA 893 GJ23019-PA 460..707 603..858 257 30.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23066-PA 924 GK23066-PA 1..924 1..914 4293 92.1 Plus
Dwil\GK10356-PA 1013 GK10356-PA 621..913 575..872 486 36 Plus
Dwil\GK14971-PA 593 GK14971-PA 140..438 547..863 422 34.1 Plus
Dwil\GK10275-PA 1547 GK10275-PA 709..997 598..887 373 33.3 Plus
Dwil\GK11355-PA 1127 GK11355-PA 694..941 603..858 259 29.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14311-PA 906 GE14311-PA 1..906 1..914 4862 98.9 Plus
Dyak\GE16298-PA 1201 GE16298-PA 798..1090 575..872 490 36 Plus
Dyak\GE12665-PA 615 GE12665-PA 106..466 514..876 409 29.9 Plus
Dyak\GE26445-PA 1149 GE26445-PA 713..960 603..858 260 30.4 Plus
Dyak\GE12727-PA 934 GE12727-PA 295..571 603..886 236 27 Plus

SD02170.hyp Sequence

Translation from 739 to 3483

> SD02170.hyp
MGCSPSTLPPAPSAGQTGERGSLPLDASEKDESRLFCIKLRRSRLRRCSC
GGVTLQPPSDGNGSTAGDNLCGQVLLNPLQTKSEADYEKLSTGKKDSIVT
VAALGNFTHSVVRRATGSTGTSGTSSSGGNSRPGHRKSSLALALTPEDEP
MDVYQRNLMDLKYPTVLPPNPPLKALLVFHKSDSICEAITAACQRHQLDV
TLVKSKEEALDTLQKSYATAQCYHLIIIDARSSKNLDAEHIARTIRHTHG
HHLTTIIAVCKKSFFEKDDVLIALLDAGVNRCVAETTNLAMCSVELKQIL
HSIIRPHNVMSTQQALYTALHRLKEVVLITDDLLRIQYANRATERLLNMR
LDEIISKQLEDIFVSDLSTISEQCKNIKEFDGILTVRRKSQEGIPMHVRV
VPVACIGSAPTHLIFNFDVPGGQMDFIATLPQPKEAPRGSLHSVRRCSFD
VRSIASDGLRRTSLAKLTSLPLEAPITKIINLLSQVQENCSADEARLIDK
VLEFLKREGLYSPQMKEIRTDDPIATDLIGALLTGPSVYSSRRSSNDSII
RTGSSTRTAAIVPAKMKSNPIIMELLDESLSWDFDIFKLEEITDYHPLLY
LGMEMFRRFDVFATLNIDENVCKAWLAVIEAHYRKSNTYHNSTHAADVMQ
ATGAFITQLTNKDMLVMDRMEEATALIAAAAHDVDHPGRSSAFLCNSNDA
LAVLYNDLTVLENHHAAITFKLTLGDDKINIFKNLDKETYKSARSTIIDM
ILATEMTRHFEHLAKFVSVFGGEEPRDHNPQTDEETSILMRRMLIKVADV
SNPARPMQFCIEWARRIAEEYFMQTDEEKQRHLPIVMPMFDRATCSIPKS
QIGFIEYIIQDMMHAWESFIDMPQLITYMQINYSQWKKYDEQGVNTLAEI
MAKQPPVGKMANSK*

SD02170.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pde8-PK 914 CG45019-PK 1..914 1..914 4699 100 Plus
Pde8-PI 914 CG45019-PI 1..914 1..914 4699 100 Plus
Pde8-PN 949 CG45019-PN 1..914 1..914 4699 100 Plus
Pde8-PA 914 CG45019-PA 1..914 1..914 4699 100 Plus
Pde8-PE 905 CG45019-PE 1..905 1..914 4639 99 Plus