Clone SD02216 Report

Search the DGRC for SD02216

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:22
Well:16
Vector:pOT2
Associated Gene/TranscriptCG7033-RA
Protein status:SD02216.pep: gold
Preliminary Size:2439
Sequenced Size:2129

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7033 2001-01-01 Release 2 assignment
CG7033 2001-09-19 Blastp of sequenced clone
CG7033 2003-01-01 Sim4 clustering to Release 3
CG7033 2008-04-29 Release 5.5 accounting
CG7033 2008-08-15 Release 5.9 accounting
CG7033 2008-12-18 5.12 accounting

Clone Sequence Records

SD02216.complete Sequence

2129 bp (2129 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058756

> SD02216.complete
CTTTGTTGCGCCCGTGTGGTATTTGAAAATTCTGTGATCACAAATCGACT
AATTACGCAGAGAAAATGGAGATGTCCTTGAATCCCGTGCGCGTGCTCAA
GAATGAGGCGCAGGAGGAGAAGGCCGAGATGGCCCGTCTGTCCTCGTTCA
TTGGTGCCATCGCCATTGGTGATCTGGTAAAGAGCACGCTGGGTCCGAAG
GGTATGGACAAGATCCTGGTGGCCACCGGACGCAACGCCGGTCATGTTGA
GGTGACCAACGATGGTGCCACCATTCTGCGTGCCGTCGGTGTAGACAATC
CGGCCGCCAAGATTCTGGTCGATATGTCGCGTGTGCAGGACGAGGAAGTG
GGCGATGGCACCACCTCGGTCACCGTTCTGGCATCGGAACTGCTGCGCGA
GGCGGAGAAACTAGTCGAACAGAAGCTGCACCCACAGATCATCGTCTCTG
GCTGGCGTCAGGCCACCCAGGTGGCACTGGAGGCGCTCACCGCCGCCGCT
CAGGACAACTCGTCCAGTGACGAGAAGTTCCGCAACGACCTGCTGAACAT
TGCCCGCACCACGCTCTCCTCGAAGATCCTGCACCAGCACAAAGACTTCT
TCGCCAATCTGGCGGTGGATGCTGTGATGCGTCTGAAGGGCTCCGGCGAG
CTCAAGTCCATACAGATCATCAAGAAATCGGGCGGCACACTGGGAGACTC
GTTCCTGGACGAGGGCTTCCTGCTGGACAAGAAGCCCGGCGTGCACCAGC
CACAGCGTATTGAGAATGCCAGAATCCTGATTGCCAACACGCCCATGGAC
ACCGATAAGATTAAGGTGTTCGGCAGCAGCATCAAGGTCGATTCGCTGGC
CAAGATCGCCGACCTGGAGATGGCCGAGAAGGAGAAGATGAAGGAAAAGG
TGGACAAGATCCTGAAGCACAAGTGCAACGTGTTCATCAACCGGCAATTG
ATCTACAACTATCCGGAGCAGCTGTTTGCCGATGCCCGTGTAATGTCCAT
CGAGCATGCCGATTTCGATGGCATCGAGCGTCTGGCGTATTGCACCGGCG
GCGAGATTGTCTCCACCTTTGAGAATCCCTCGCTGGTGAAGCTTGGCGAA
TGCGATGTCATCGAACAGGTGATGATCGGCGAGGATACGCTGTTGCGTTT
TAGCGGCGTTAAGCTGGGCGAGGCCTGCACCATCGTGATCCGCGGTGCTA
CCCAACAGATTCTGGACGAGGCTGATCGTTCCCTGCACGACGCCCTCTGC
GTGCTGGCGGCCACCGTCAAGGAGTCGCGCATCATTTTCGGTGGCGGCTG
CTCCGAGGCTCTAATGGCCACCGCCGTGCTGAAGAAGGCAGCCGAGACAC
CCGGCAAGGAGGCCATCGCTATCGAGGCCTTTGCCCGCGCTCTGCTGTCC
CTGCCCACGGCCATTGCCGACAATGCTGGCTACGATTCAGCCCAACTGGT
TTCGGAGCTGCGTGCCGGCCACGCCCAGGGCAAACAGACTCTGGGTCTGG
ACATGGAGCTGGGCAAGGTGGCCGATGTCCGTGAACTGGGCATCACCGAG
TCGTTCGCCGTTAAGCGCCAAGTTCTGATGTCCGCCTCGGAGGCTGCCGA
GATGATCTTGCGCGTGGACAACATCATCCGTTGCGCTCCACGCCGACGCG
TTCCCGACAGGGGCTACTGCTAGGCGCTTAAGTATTCTTGTTCTAGGATC
ATATTTTTTTTAATTATGAACTCTCGTTTAACATCATCGCTAACCTTACA
CGTTCTGTTTACTACACTAATAATCCACACACAACACATTAGCAATTATA
TCACACGTCCCACTCTCAAAGTCGCACAATTTCTCGCTAAATTTGTCCCT
GTCGTGTAATCCTTCTACTTAATTGTGAAACAAATTGATATGATGTTGCA
AGCTGAGCTTTTGATTCGAGGATGAGTGCTGCGATCAAACCAAAACATTT
CAAAAATGTCTAAAACTCCATCAAACCGACAACTAAACGAACTTGTAAAT
GAATACAATTGTTGTAAACATTTGATGTGCGCAAATTGAAGACCATTAAA
CAGAAAAAAAAAGGAATAAATGATAAATCATATATTTATGCTTAACAAAA
CTAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD02216.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7033-RA 2346 CG7033-RA 148..2257 1..2109 10495 99.9 Plus
CG7033-RC 2117 CG7033-RC 74..2117 67..2109 10165 99.9 Plus
CG7033.a 2104 CG7033.a 69..2104 68..2102 10140 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8983919..8984634 1387..2102 3580 100 Plus
chrX 22417052 chrX 8982296..8982986 68..758 3455 100 Plus
chrX 22417052 chrX 8983219..8983847 759..1387 3145 100 Plus
chrX 22417052 chrX 8981339..8981407 1..69 345 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:45:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9092110..9092833 1387..2109 3555 99.7 Plus
X 23542271 X 9090487..9091177 68..758 3455 100 Plus
X 23542271 X 9091410..9092038 759..1387 3145 100 Plus
X 23542271 X 9089531..9089599 1..69 345 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9100208..9100931 1387..2109 3565 99.7 Plus
X 23527363 X 9098585..9099275 68..758 3455 100 Plus
X 23527363 X 9099508..9100136 759..1387 3145 100 Plus
X 23527363 X 9097629..9097697 1..69 345 100 Plus
Blast to na_te.dros performed 2019-03-15 19:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT2 2775 Dbuz\BuT2 BUT2 2775bp 796..850 1909..1961 117 70.9 Plus

SD02216.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:29:12 Download gff for SD02216.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8981339..8981406 1..68 100 -> Plus
chrX 8982297..8982986 69..758 100 -> Plus
chrX 8983219..8983846 759..1386 100 -> Plus
chrX 8983919..8984634 1387..2102 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:57:23 Download gff for SD02216.complete
Subject Subject Range Query Range Percent Splice Strand
CG7033-RA 1..1608 66..1673 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:03 Download gff for SD02216.complete
Subject Subject Range Query Range Percent Splice Strand
CG7033-RA 1..1608 66..1673 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:11:55 Download gff for SD02216.complete
Subject Subject Range Query Range Percent Splice Strand
CG7033-RA 1..1608 66..1673 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:13 Download gff for SD02216.complete
Subject Subject Range Query Range Percent Splice Strand
CG7033-RA 1..1608 66..1673 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:52 Download gff for SD02216.complete
Subject Subject Range Query Range Percent Splice Strand
CG7033-RA 1..1608 66..1673 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:12:27 Download gff for SD02216.complete
Subject Subject Range Query Range Percent Splice Strand
CG7033-RA 19..2121 1..2102 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:03 Download gff for SD02216.complete
Subject Subject Range Query Range Percent Splice Strand
CG7033-RA 19..2121 1..2102 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:11:55 Download gff for SD02216.complete
Subject Subject Range Query Range Percent Splice Strand
CG7033-RA 19..2121 1..2102 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:13 Download gff for SD02216.complete
Subject Subject Range Query Range Percent Splice Strand
CG7033-RA 19..2121 1..2102 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:52 Download gff for SD02216.complete
Subject Subject Range Query Range Percent Splice Strand
CG7033-RA 19..2121 1..2102 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:29:12 Download gff for SD02216.complete
Subject Subject Range Query Range Percent Splice Strand
X 9089531..9089598 1..68 100 -> Plus
X 9090488..9091177 69..758 100 -> Plus
X 9091410..9092037 759..1386 100 -> Plus
X 9092110..9092826 1387..2102 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:29:12 Download gff for SD02216.complete
Subject Subject Range Query Range Percent Splice Strand
X 9089531..9089598 1..68 100 -> Plus
X 9090488..9091177 69..758 100 -> Plus
X 9091410..9092037 759..1386 100 -> Plus
X 9092110..9092826 1387..2102 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:29:12 Download gff for SD02216.complete
Subject Subject Range Query Range Percent Splice Strand
X 9089531..9089598 1..68 100 -> Plus
X 9090488..9091177 69..758 100 -> Plus
X 9091410..9092037 759..1386 100 -> Plus
X 9092110..9092826 1387..2102 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:11:55 Download gff for SD02216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8983564..8983631 1..68 100 -> Plus
arm_X 8984521..8985210 69..758 100 -> Plus
arm_X 8985443..8986070 759..1386 100 -> Plus
arm_X 8986143..8986859 1387..2102 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:24:17 Download gff for SD02216.complete
Subject Subject Range Query Range Percent Splice Strand
X 9098586..9099275 69..758 100 -> Plus
X 9099508..9100135 759..1386 100 -> Plus
X 9100208..9100924 1387..2102 99   Plus
X 9097629..9097696 1..68 100 -> Plus

SD02216.pep Sequence

Translation from 65 to 1672

> SD02216.pep
MEMSLNPVRVLKNEAQEEKAEMARLSSFIGAIAIGDLVKSTLGPKGMDKI
LVATGRNAGHVEVTNDGATILRAVGVDNPAAKILVDMSRVQDEEVGDGTT
SVTVLASELLREAEKLVEQKLHPQIIVSGWRQATQVALEALTAAAQDNSS
SDEKFRNDLLNIARTTLSSKILHQHKDFFANLAVDAVMRLKGSGELKSIQ
IIKKSGGTLGDSFLDEGFLLDKKPGVHQPQRIENARILIANTPMDTDKIK
VFGSSIKVDSLAKIADLEMAEKEKMKEKVDKILKHKCNVFINRQLIYNYP
EQLFADARVMSIEHADFDGIERLAYCTGGEIVSTFENPSLVKLGECDVIE
QVMIGEDTLLRFSGVKLGEACTIVIRGATQQILDEADRSLHDALCVLAAT
VKESRIIFGGGCSEALMATAVLKKAAETPGKEAIAIEAFARALLSLPTAI
ADNAGYDSAQLVSELRAGHAQGKQTLGLDMELGKVADVRELGITESFAVK
RQVLMSASEAAEMILRVDNIIRCAPRRRVPDRGYC*

SD02216.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19192-PA 533 GF19192-PA 1..533 3..535 2732 96.8 Plus
Dana\GF16152-PA 557 GF16152-PA 21..541 24..528 719 35 Plus
Dana\GF12298-PA 542 GF12298-PA 37..534 26..520 686 35.2 Plus
Dana\GF18192-PA 545 GF18192-PA 1..523 5..526 686 33.3 Plus
Dana\GF15661-PA 533 GF15661-PA 27..529 24..521 679 32.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18286-PA 533 GG18286-PA 1..533 3..535 2783 98.9 Plus
Dere\GG12510-PA 557 GG12510-PA 21..541 24..528 724 34.5 Plus
Dere\GG13138-PA 544 GG13138-PA 1..523 5..526 683 33.5 Plus
Dere\GG20252-PA 542 GG20252-PA 37..534 26..520 681 35.2 Plus
Dere\GG10247-PA 533 GG10247-PA 27..529 24..521 661 32.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12396-PA 533 GH12396-PA 1..533 3..535 2645 93.2 Plus
Dgri\GH18443-PA 557 GH18443-PA 21..541 24..528 723 34.8 Plus
Dgri\GH19719-PA 541 GH19719-PA 16..534 7..520 677 34.2 Plus
Dgri\GH11666-PA 533 GH11666-PA 27..529 24..521 671 32.6 Plus
Dgri\GH18252-PA 501 GH18252-PA 1..480 47..526 660 33 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
CCT2-PA 535 CG7033-PA 1..535 1..535 2653 100 Plus
CCT1-PA 557 CG5374-PA 21..538 24..525 734 34 Plus
CCT1-PB 557 CG5374-PB 21..538 24..525 734 34 Plus
CCT7-PA 544 CG8351-PA 1..531 5..533 730 33.5 Plus
CCT5-PB 512 CG8439-PB 5..504 24..520 710 35.2 Plus
CCT5-PA 542 CG8439-PA 16..534 7..520 707 34.4 Plus
CCT4-PA 533 CG5525-PA 20..529 17..521 678 32.3 Plus
CCT3-PD 544 CG8977-PD 7..528 7..527 545 29 Plus
CCT3-PC 544 CG8977-PC 7..528 7..527 545 29 Plus
CCT3-PB 544 CG8977-PB 7..528 7..527 545 29 Plus
CCT3-PA 544 CG8977-PA 7..528 7..527 545 29 Plus
CCT6-PA 533 CG8231-PA 4..525 8..522 527 26.5 Plus
CCT8-PA 546 CG8258-PA 43..526 38..521 455 29 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14726-PA 514 GI14726-PA 1..514 22..535 2440 92.2 Plus
Dmoj\GI10788-PA 557 GI10788-PA 21..541 24..528 734 34.3 Plus
Dmoj\GI17110-PA 533 GI17110-PA 27..529 24..521 692 33.4 Plus
Dmoj\GI23651-PA 544 GI23651-PA 1..523 5..526 692 33.5 Plus
Dmoj\GI20138-PA 541 GI20138-PA 16..534 7..520 687 34.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13090-PA 521 GL13090-PA 1..521 1..535 2567 91.4 Plus
Dper\GL23334-PA 557 GL23334-PA 21..541 24..528 734 35.1 Plus
Dper\GL19739-PA 533 GL19739-PA 15..529 12..521 681 32.8 Plus
Dper\GL11023-PA 542 GL11023-PA 37..534 26..520 670 34.8 Plus
Dper\GL12486-PA 540 GL12486-PA 2..522 7..526 656 33 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20046-PA 533 GA20046-PA 1..533 3..535 2648 94 Plus
Dpse\GA18830-PA 557 GA18830-PA 21..541 24..528 734 35.1 Plus
Dpse\GA18950-PA 533 GA18950-PA 15..529 12..521 681 32.8 Plus
Dpse\GA21078-PA 542 GA21078-PA 37..534 26..520 670 34.8 Plus
Dpse\GA21011-PA 541 GA21011-PA 1..523 5..526 658 32.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13717-PA 533 GM13717-PA 1..533 3..535 2758 98.1 Plus
Dsec\GM23644-PA 557 GM23644-PA 21..541 24..528 726 34.5 Plus
Dsec\GM21339-PA 542 GM21339-PA 37..534 26..520 678 35 Plus
Dsec\GM26064-PA 533 GM26064-PA 27..529 24..521 662 32.4 Plus
Dsec\GM23766-PA 501 GM23766-PA 1..480 47..526 633 33.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24772-PA 449 GD24772-PA 1..449 87..535 2338 98 Plus
Dsim\T-cp1-PA 557 GD18453-PA 21..541 24..528 726 34.5 Plus
Dsim\GD22106-PA 516 GD22106-PA 27..512 24..521 598 30.9 Plus
Dsim\GD18576-PA 436 GD18576-PA 1..425 5..473 576 31.8 Plus
Dsim\GD19118-PA 544 GD19118-PA 6..528 6..527 532 29.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19440-PA 533 GJ19440-PA 1..533 3..535 2628 92.5 Plus
Dvir\GJ14386-PA 557 GJ14386-PA 21..541 24..528 731 34.3 Plus
Dvir\GJ23495-PA 545 GJ23495-PA 1..523 5..526 698 34.4 Plus
Dvir\GJ16148-PA 533 GJ16148-PA 27..529 24..521 689 33.2 Plus
Dvir\GJ19908-PA 541 GJ19908-PA 16..534 7..520 675 34.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16400-PA 533 GK16400-PA 1..533 3..535 2668 94.6 Plus
Dwil\GK14439-PA 557 GK14439-PA 21..541 24..528 726 34.7 Plus
Dwil\GK14617-PA 533 GK14617-PA 27..529 24..521 684 33 Plus
Dwil\GK23011-PA 542 GK23011-PA 45..534 34..520 674 34.9 Plus
Dwil\GK11257-PA 544 GK11257-PA 1..523 5..526 673 33 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15818-PA 533 GE15818-PA 1..533 3..535 2771 98.5 Plus
Dyak\GE24032-PA 557 GE24032-PA 21..541 24..528 724 34.9 Plus
Dyak\GE12411-PA 542 GE12411-PA 37..534 26..520 684 35.2 Plus
Dyak\GE25909-PA 515 GE25909-PA 1..494 33..526 675 33.9 Plus
Dyak\GE12130-PA 533 GE12130-PA 27..529 24..521 662 32.4 Plus

SD02216.hyp Sequence

Translation from 65 to 1672

> SD02216.hyp
MEMSLNPVRVLKNEAQEEKAEMARLSSFIGAIAIGDLVKSTLGPKGMDKI
LVATGRNAGHVEVTNDGATILRAVGVDNPAAKILVDMSRVQDEEVGDGTT
SVTVLASELLREAEKLVEQKLHPQIIVSGWRQATQVALEALTAAAQDNSS
SDEKFRNDLLNIARTTLSSKILHQHKDFFANLAVDAVMRLKGSGELKSIQ
IIKKSGGTLGDSFLDEGFLLDKKPGVHQPQRIENARILIANTPMDTDKIK
VFGSSIKVDSLAKIADLEMAEKEKMKEKVDKILKHKCNVFINRQLIYNYP
EQLFADARVMSIEHADFDGIERLAYCTGGEIVSTFENPSLVKLGECDVIE
QVMIGEDTLLRFSGVKLGEACTIVIRGATQQILDEADRSLHDALCVLAAT
VKESRIIFGGGCSEALMATAVLKKAAETPGKEAIAIEAFARALLSLPTAI
ADNAGYDSAQLVSELRAGHAQGKQTLGLDMELGKVADVRELGITESFAVK
RQVLMSASEAAEMILRVDNIIRCAPRRRVPDRGYC*

SD02216.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7033-PA 535 CG7033-PA 1..535 1..535 2653 100 Plus
T-cp1-PA 557 CG5374-PA 21..538 24..525 734 34 Plus
T-cp1-PB 557 CG5374-PB 21..538 24..525 734 34 Plus
Tcp-1eta-PA 544 CG8351-PA 1..531 5..533 730 33.5 Plus
Cct5-PB 512 CG8439-PB 5..504 24..520 710 35.2 Plus