Clone SD02261 Report

Search the DGRC for SD02261

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:22
Well:61
Vector:pOT2
Associated Gene/TranscriptCG42638-RA
Protein status:SD02261.pep: gold
Preliminary Size:2978
Sequenced Size:3085

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8743 2001-01-01 Release 2 assignment
CG8743 2001-12-12 Blastp of sequenced clone
CG8743 2003-01-01 Sim4 clustering to Release 3
CG8743 2008-04-29 Release 5.5 accounting
CG8743 2008-08-15 Release 5.9 accounting
CG8743 2008-12-18 5.12 accounting

Clone Sequence Records

SD02261.complete Sequence

3085 bp (3085 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070709

> SD02261.complete
CCTATTGAAAACAAAGCAATTTTCGTGGTCTTTTGGCCAGTATTTAATAT
AAATTCGCTGGCAAAAGTCGCGTATTAATTGCAAAAGAACACATATTTAC
CTCCCCTCCCCCGATTGCTTGTTGCGCCTGTGCGGATTCTTCTTTTGCAT
GTCGACTGGGCGGGCAAAAGAAAGTTAGCACGGAGAACAACAACGCAGGT
GACTTGACCTCGCAACGAAGGAGGAGCACATCGAGATGCAGAGCTACGGC
CCCGGAGCCCAGACAGCTCCGGCCGTCAAGCGCCGCACGGACAGCTACGA
GGCTGCCCAGCAACAGCAGCAGTCGCCGGAGAGCGACGAGGAGTACGTGA
ACACCAGGATACTGCGGCGCCAAGTGCAGCTGCAGTCCACTCCGGTGGCC
CCGGTGGTGCCCATGCCCATATCCGCCGGTAGTGGCACTGCCCCACCCTC
CGTGGATGGCCGCGAGGAGCAGCCCGAATTCCCCGGATCCTCGGCTGCAT
CTTACCAGGAGGAGCGAATGCGCAGGAAGCTTCAGTTCTTCTTTATGAAC
CCCATTGAGAAATGGCAGGCCAAGCGGAAATTTCCGTACAAGTTCGTTGT
GCAGATTGTAAAAATCTTTCTGGTGACGATGCAATTGTGCCTTTTTGCCC
ACTCGCGGTATAACCACATCAACTACACGGGTGATAACCGATTTGCCTTC
TCACATCTATTCCTGCGCGGCTGGGATTCTTCCCGGGAGGTGGAGAGTTA
TCCGCCTGCTGTGGGTCCCTTTGCTCTATACCTCAAATCGGAGTTCTTCG
ACACTGTGCAGTATGCAGTCAATGGCTACGCGAATGTAAGCCGATCTATT
GGACCATACGACTACCCGACGCCCAATAACACAATGCCGCCACTAAAGCT
TTGCCTGCAGAACTATAGAGAGGGCACCATATTTGGCTTTAATGAGTCCT
ACATTTTCGATCCACATATCGACGAGGTGTGTGAGCGACTACCTCCGAAC
GTAACCACCATTGGGGTGGAGAATTACCTCAGGCAGCGCGATGTGGAGGT
CAATTTTGCATCTCTTGTCTCCGCACAGTTGACGTTCAAGATAAAGACGG
TTAATTTCAAGGCAAATGGTGGACCTCTTTCTGCTCCTGATTGTTTTCGG
TTTGACATTTCCATAACGTTTAACAACCGAGACCATGACGGGCAAATGCT
GCTCTCACTGGATGCGGAGGCGACGCGGCTGAAGTGCCACGGAGCAACGG
ACTTCATATCAGACGCCAATTTCGATTCCATGCTGCGAAGCGTACTCAAT
ATATTCGTCCTACTAACATGCGCACTATCCTTTGCACTCTGTACAAGGGC
TCTGTGGAGAGCATATCTGCTGAGATGTACAACTGTCAACTTTTTCCGTT
CGCAATTCGGCAAGGAGCTGAGCTTTGACGGCCGACTGGAATTCGTTAAC
TTTTGGTACATCATGATCATTTTCAATGACGTCCTTTTGATCATTGGATC
AGCTCTAAAAGAGCAAATCGAGGGAAGGTACTTGGTGGTGGACCAATGGG
ATACCTGCTCGCTTTTTCTGGGAATTGGCAACCTGCTTGTTTGGTTCGGA
GTGCTGCGCTACCTCGGCTTCTTCAAAACCTACAACGTTGTGATACTGAC
GCTGAAAAAGGCGGCACCAAAGATTCTGCGCTTCCTTATCGCCGCCTTGC
TGATCTATGCTGGATTTGTGTTTTGCGGCTGGCTGATCTTGGGACCCTAT
CACATGAAGTTCCGATCGCTGGCTACAACGTCAGAGTGCTTGTTTGCGCT
GATAAACGGTGATGATATGTTCGCCACCTTTGCCACGCTTTCCAGCAAGG
CCACCTGGCTGTGGTGGTTCTGCCAGATCTACTTGTACTCGTTCATATCC
TTGTACATTTATGTGGTCCTGTCGCTGTTCATTGCCGTCATAATGGATGC
CTACGACACGATAAAGGCGTATTACAAGGATGGCTTTCCCACCACCGATC
TCAAGGCATTTGTCGGAACGCGCACTGCAGAGGACATTAGTTCTGGTGTC
TTCATGACCGACCTGGACGACTTCGACCAGACGAGCTTCCTTGACGTGGT
GAAGAGCATTTGCTGCTGTGGACGGTGCGGTCGGCATCAGGAGCCCGCCC
AGCCCAACAGTGGTTACACCAGCCTTTCTAGTATTATGAAGTAACTGGGT
GCGCTATGTCGACCCGCAGGTCTTCATTTTGTTTTGTTTTGTCAGCTTTA
TGTGTGTAGTCAAACTTGTTGTTAGCTTTTTGTATTAGTTTGTTAGTTTG
CCAAAGCACTTGAACCGAGATAAGAGAAACCATAACGTACGTACCTATGA
GAAATTCCAAAAGCAGCTGCTCTGATCACAAACAGCGGGCATGTTCCGAT
TTTATCTTTCGCAGCAATGGCTTTAATTCGGTTTGCAGAAATATAATTCT
GACTGAAATTCATTTTTCTTCAATACAAAAATTACAAAATGTATAAGACC
AAAAGGAAAAACTAAATGTAAGGCGAATTTGTGTCATTTCTGCGAAAGTA
AAATCCGAAAAATGACTAAGAAAGGGCACCAAGCAACGCTGTACGCTGGG
AAACCACAAAGTCGCAAATTTGTTTTTGTAACGCGAGATATTAAGTGTGT
GATATAATGTGGAACCAGAATCGGAGAACAATGGAAATTATATTAGAGGG
AGCTATTTTTGTTAGCGATATCGACATGGGCCTGGTCAAGATCTTCCATG
AAAACGAATGCATCCGAATCGAGTTTTCATAGAAATCTGAAAGTCACAGC
AAAAAATTGTATAAAACTGCACTGGTCGACAAAATGAGATTTTTGGCAGT
CTAAGCAAATAGTTATTTTAGAAAGTGTTTAGTTCGGCATAACACAACAT
CGATTTTTGTCGACTTGTGTCAATTTCAGAAGCCATAGATAAGGAAACAT
TAGGTAACTATATTTTATGTGTACAATGAAAACTTTGTATTTATAACCAA
AAACCACAAACACAATAAACTGTTTATAGAACGATTGAATTGAACAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD02261.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
trpml-RA 3650 trpml-RA 48..3095 1..3048 15210 99.9 Plus
CG42638-RA 3045 CG42638-RA 1..3045 1..3045 15195 99.9 Plus
nc_13567.a 655 nc_13567.a 24..627 1..604 3020 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19703771..19705361 3045..1455 7940 99.9 Minus
chr3L 24539361 chr3L 19735187..19736777 3045..1455 7940 99.9 Minus
chr3L 24539361 chr3L 19705499..19706353 1457..603 4260 99.9 Minus
chr3L 24539361 chr3L 19736915..19737769 1457..603 4260 99.9 Minus
chr3L 24539361 chr3L 19707053..19707656 604..1 3020 100 Minus
chr3L 24539361 chr3L 19738469..19739072 604..1 3020 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:45:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19714415..19716008 3048..1455 7955 99.9 Minus
3L 28110227 3L 19745831..19747424 3048..1455 7955 99.9 Minus
3L 28110227 3L 19716146..19717000 1457..603 4260 99.9 Minus
3L 28110227 3L 19747562..19748416 1457..603 4260 99.9 Minus
3L 28110227 3L 19717700..19718303 604..1 3020 100 Minus
3L 28110227 3L 19749116..19749719 604..1 3020 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19738931..19740524 3048..1455 7955 99.9 Minus
3L 28103327 3L 19707515..19709108 3048..1455 7955 99.9 Minus
3L 28103327 3L 19740662..19741516 1457..603 4260 99.8 Minus
3L 28103327 3L 19709246..19710100 1457..603 4260 99.8 Minus
3L 28103327 3L 19742216..19742819 604..1 3020 100 Minus
3L 28103327 3L 19710800..19711403 604..1 3020 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:33:34 has no hits.

SD02261.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:34:42 Download gff for SD02261.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19703771..19705360 1456..3045 99 <- Minus
chr3L 19705501..19706351 605..1455 99 <- Minus
chr3L 19707053..19707656 1..604 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:57:29 Download gff for SD02261.complete
Subject Subject Range Query Range Percent Splice Strand
CG8743-RA 1..1959 236..2194 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:18:10 Download gff for SD02261.complete
Subject Subject Range Query Range Percent Splice Strand
CG42638-RA 1..1959 236..2194 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:19:55 Download gff for SD02261.complete
Subject Subject Range Query Range Percent Splice Strand
CG42638-RA 1..1959 236..2194 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:44:18 Download gff for SD02261.complete
Subject Subject Range Query Range Percent Splice Strand
CG8743-RA 1..1959 236..2194 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:21:30 Download gff for SD02261.complete
Subject Subject Range Query Range Percent Splice Strand
CG42638-RA 1..1959 236..2194 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:51:04 Download gff for SD02261.complete
Subject Subject Range Query Range Percent Splice Strand
CG8743-RA 48..3092 1..3045 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:18:10 Download gff for SD02261.complete
Subject Subject Range Query Range Percent Splice Strand
trpml-RA 48..3092 1..3045 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:55 Download gff for SD02261.complete
Subject Subject Range Query Range Percent Splice Strand
CG42638-RA 26..3070 1..3045 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:44:18 Download gff for SD02261.complete
Subject Subject Range Query Range Percent Splice Strand
CG8743-RA 48..3092 1..3045 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:30 Download gff for SD02261.complete
Subject Subject Range Query Range Percent Splice Strand
CG42638-RA 26..3070 1..3045 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:34:42 Download gff for SD02261.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19714418..19716007 1456..3045 99 <- Minus
3L 19716148..19716998 605..1455 99 <- Minus
3L 19717700..19718303 1..604 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:34:42 Download gff for SD02261.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19714418..19716007 1456..3045 99 <- Minus
3L 19716148..19716998 605..1455 99 <- Minus
3L 19717700..19718303 1..604 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:34:42 Download gff for SD02261.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19714418..19716007 1456..3045 99 <- Minus
3L 19716148..19716998 605..1455 99 <- Minus
3L 19717700..19718303 1..604 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:55 Download gff for SD02261.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19707518..19709107 1456..3045 99 <- Minus
arm_3L 19709248..19710098 605..1455 99 <- Minus
arm_3L 19710800..19711403 1..604 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:20:31 Download gff for SD02261.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19707518..19709107 1456..3045 99 <- Minus
3L 19709248..19710098 605..1455 99 <- Minus
3L 19710800..19711403 1..604 100   Minus

SD02261.pep Sequence

Translation from 235 to 2193

> SD02261.pep
MQSYGPGAQTAPAVKRRTDSYEAAQQQQQSPESDEEYVNTRILRRQVQLQ
STPVAPVVPMPISAGSGTAPPSVDGREEQPEFPGSSAASYQEERMRRKLQ
FFFMNPIEKWQAKRKFPYKFVVQIVKIFLVTMQLCLFAHSRYNHINYTGD
NRFAFSHLFLRGWDSSREVESYPPAVGPFALYLKSEFFDTVQYAVNGYAN
VSRSIGPYDYPTPNNTMPPLKLCLQNYREGTIFGFNESYIFDPHIDEVCE
RLPPNVTTIGVENYLRQRDVEVNFASLVSAQLTFKIKTVNFKANGGPLSA
PDCFRFDISITFNNRDHDGQMLLSLDAEATRLKCHGATDFISDANFDSML
RSVLNIFVLLTCALSFALCTRALWRAYLLRCTTVNFFRSQFGKELSFDGR
LEFVNFWYIMIIFNDVLLIIGSALKEQIEGRYLVVDQWDTCSLFLGIGNL
LVWFGVLRYLGFFKTYNVVILTLKKAAPKILRFLIAALLIYAGFVFCGWL
ILGPYHMKFRSLATTSECLFALINGDDMFATFATLSSKATWLWWFCQIYL
YSFISLYIYVVLSLFIAVIMDAYDTIKAYYKDGFPTTDLKAFVGTRTAED
ISSGVFMTDLDDFDQTSFLDVVKSICCCGRCGRHQEPAQPNSGYTSLSSI
MK*

SD02261.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10713-PA 656 GF10713-PA 22..656 14..652 3169 92.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13376-PA 652 GG13376-PA 1..652 1..652 3435 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14793-PA 679 GH14793-PA 19..679 15..652 2888 81.7 Plus
Dgri\GH11647-PA 808 GH11647-PA 512..733 406..646 163 22.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
Trpml-PA 652 CG8743-PA 1..652 1..652 3444 100 Plus
CG42638-PA 652 CG42638-PA 1..652 1..652 3444 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11846-PA 664 GI11846-PA 17..664 15..652 2890 83.8 Plus
Dmoj\GI17948-PA 816 GI17948-PA 521..743 406..651 164 22.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20871-PA 659 GL20871-PA 1..659 1..652 3209 91.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21296-PA 659 GA21296-PA 1..659 1..652 3215 91.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16546-PA 652 GM16546-PA 1..652 1..652 3485 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12254-PA 378 GD12254-PA 1..360 1..360 1929 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13545-PA 661 GJ13545-PA 1..661 1..652 2868 83.1 Plus
Dvir\GJ17720-PA 842 GJ17720-PA 524..724 378..583 155 23.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25728-PA 679 GK25728-PA 22..679 11..652 2927 84.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22470-PA 999 GE22470-PA 1..486 1..483 2486 95.9 Plus

SD02261.hyp Sequence

Translation from 235 to 2193

> SD02261.hyp
MQSYGPGAQTAPAVKRRTDSYEAAQQQQQSPESDEEYVNTRILRRQVQLQ
STPVAPVVPMPISAGSGTAPPSVDGREEQPEFPGSSAASYQEERMRRKLQ
FFFMNPIEKWQAKRKFPYKFVVQIVKIFLVTMQLCLFAHSRYNHINYTGD
NRFAFSHLFLRGWDSSREVESYPPAVGPFALYLKSEFFDTVQYAVNGYAN
VSRSIGPYDYPTPNNTMPPLKLCLQNYREGTIFGFNESYIFDPHIDEVCE
RLPPNVTTIGVENYLRQRDVEVNFASLVSAQLTFKIKTVNFKANGGPLSA
PDCFRFDISITFNNRDHDGQMLLSLDAEATRLKCHGATDFISDANFDSML
RSVLNIFVLLTCALSFALCTRALWRAYLLRCTTVNFFRSQFGKELSFDGR
LEFVNFWYIMIIFNDVLLIIGSALKEQIEGRYLVVDQWDTCSLFLGIGNL
LVWFGVLRYLGFFKTYNVVILTLKKAAPKILRFLIAALLIYAGFVFCGWL
ILGPYHMKFRSLATTSECLFALINGDDMFATFATLSSKATWLWWFCQIYL
YSFISLYIYVVLSLFIAVIMDAYDTIKAYYKDGFPTTDLKAFVGTRTAED
ISSGVFMTDLDDFDQTSFLDVVKSICCCGRCGRHQEPAQPNSGYTSLSSI
MK*

SD02261.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Trpml-PA 652 CG8743-PA 1..652 1..652 3444 100 Plus
CG42638-PA 652 CG42638-PA 1..652 1..652 3444 100 Plus