Clone SD02279 Report

Search the DGRC for SD02279

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:22
Well:79
Vector:pOT2
Associated Gene/Transcriptbrk-RA
Protein status:SD02279.pep: validated not full length
Preliminary Size:2178
Sequenced Size:1958

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9653 2001-07-04 Blastp of sequenced clone
CG9653 2003-01-01 Sim4 clustering to Release 3
brk 2008-04-29 Release 5.5 accounting
brk 2008-08-15 Release 5.9 accounting
brk 2008-12-18 5.12 accounting

Clone Sequence Records

SD02279.complete Sequence

1958 bp (1958 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052069

> SD02279.complete
ATCCGCTGGTGCACCAGTTGCATCACCATCACGCCGCCGCGGTGGGTCAT
CATCATCATCATGCCGCCCACCATCATGCCGCCCATCATCATCACGCTGC
AGCAGCAGCGGCGGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCCCACC
ATCATGCCGCCCACCATTTGCTGGCAGCCAATGGCATGGTTCCACACCCC
CTGGCCGCCCATCCCCACTTGCATGTCCCGGTGGCAATGCATCCTCAAAT
GCAGCATCAGAAGGAGCAACAGCAGCAGCAGCAGCAGTTGCAGCAGGAGC
AGCAGCAACAGGATCAGCAGCAGTCACAGCAGGAGACACCTGCAACCATT
GCTACCAATGGCAGCAATCAGGGATCCTCGAATGTCCTTTCGGCGGCCAA
AATAGCCGCTGTTGTTGCCGCCGCCATGGCCACCAGCAATGGCAATCCCA
CACCGACAGCAACAATCCCCGCCAGCAGCAGCAGCAGCAGCAACACATTG
CCGAGCAGCAATAACAGTAGTTGCCACAACAGCAGCAGCAGCAGCAATAG
CTGCAACAGCAACCAAGTGCCAATACAAGTGCCAATCCTGAGCGGATCCC
CTGGGTCCACATCGTCAGCCAGTCACATTCCACATGTGCCCTTTGCCTAC
CATCACAATCTGCATGGCTATTTGGAGAATCGACTGGAGGCGGTTGCCAC
ACCAGCCCCCATGGACCTCTCTCTCGGATCCTCTGCCCGCCGTCAAATGC
AGTTGCACGAAAAGGATCCATCTGGTGTGGATCTCACTTTCCGCAAACGT
AAGGTCATCACTAGTCCGATGCAGCCGGATAAGATTAGTAAGCTGGAGGA
GGTGATCAAGAAGGAGCCCGAAACGGAAACGGAGAACGAGGATGTGGAGG
TGGACGTGGAGACGGAGCAGCCGGAGGAGCACAAGCTGCCCTCTAAACAG
GTCAAGCTATTTAAGCCCTATTTGCTGGACGATGATGAGGAGCAGGATCA
TCATCATCATCACCATCACCATCGGCAGGAGGATTTGGATGAGGGAGCTG
CCGAGGAGGAGCAGGACGACGAGGAAGAGTCCCGCTATGCCGACGATGAT
GAGGTGGACTCCAAGGAGGCGGCCGACAAGAAACAGCGTCGCCTCAAGAA
AAAGCCATCGGCAATCAACGAACAAAGGGAACCCATCATCTGGAGCAACC
ATCCGTATCCCGGTGGCTGTGTATCGCCCGGCAGTTCGATCACCAGCAGC
TTTCAGTGCCCCACCAGTATGCAACAGCAGCAGACATTTCCCGTCGCCGG
CGGGAGTCCTAATCAGCAATTTCAGGACAACTGCAGCTCCAGCAAAGCCA
CCACGCCCCTCAGCCCATTCTCGGCGCCCGCCCTCTCGCCCACCGGCTTC
TGTTGCCCCAAAGGATCGCCCGTTTCCGGTTACGAGAGCAGCTCATCCAC
CTACAGCGACAGCGGCAGCAACTACAGCCTCAATCTCCAGCTGCATGCCG
TCTACAACGACAATCTGATGTACATGCAACAGCAGCAGCAGCAGCAGCAA
CAGCAGCATCACCTGCAACATCAGCAGCACCTGCAGCGCTGGCTGGATCA
GGAGTCCTTGGCCACTGCGAGGACATCATCCGTCAACCGACCACTGATTC
TCGTGGCGGATACTGCGCCCACAAACCTGACCCTGGTGGCCTAAGAACAC
ACACACACACACACACACACACACACACAACAAACAACACACACAATAGA
AACTAAGGAAGCAGCAATCCCACCAATCGGATGTTATAATGGCAGTCACT
GGGCCTGGCCTTTTAGTTCCCTAAGCCATATTTAAGCTTAATAACGTTTT
TTTTAGCCCTACCACCTAAGTTTACCTTAATAAAAAATTGTATATCTAAG
CGCAAACATATATCTTCCAAGCATATCAGCAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

SD02279.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
brk-RA 3672 brk-RA 954..2891 1..1938 9690 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7200825..7202754 1..1930 9650 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:45:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7308894..7310831 1..1938 9690 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7316992..7318929 1..1938 9690 100 Plus
3R 31820162 3R 23133511..23133572 1587..1526 205 88.7 Minus
X 23527363 X 3914493..3914542 1579..1530 190 92 Minus
X 23527363 X 10805073..10805134 1587..1526 190 87 Minus
Blast to na_te.dros performed 2019-03-15 19:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2480..2654 1438..1604 152 59.1 Plus

SD02279.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:29:15 Download gff for SD02279.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7201160..7201295 336..471 100 == Plus
chrX 7201388..7202350 564..1526 97 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:57:31 Download gff for SD02279.complete
Subject Subject Range Query Range Percent Splice Strand
brk-RA 422..2115 1..1694 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:40:58 Download gff for SD02279.complete
Subject Subject Range Query Range Percent Splice Strand
brk-RA 422..2115 1..1694 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:12:03 Download gff for SD02279.complete
Subject Subject Range Query Range Percent Splice Strand
brk-RA 422..2115 1..1694 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:19:14 Download gff for SD02279.complete
Subject Subject Range Query Range Percent Splice Strand
brk-RA 422..2115 1..1694 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:59 Download gff for SD02279.complete
Subject Subject Range Query Range Percent Splice Strand
brk-RA 422..2115 1..1694 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:46:45 Download gff for SD02279.complete
Subject Subject Range Query Range Percent Splice Strand
brk-RA 954..2883 1..1930 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:40:58 Download gff for SD02279.complete
Subject Subject Range Query Range Percent Splice Strand
brk-RA 954..2883 1..1930 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:12:03 Download gff for SD02279.complete
Subject Subject Range Query Range Percent Splice Strand
brk-RA 956..2885 1..1930 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:19:15 Download gff for SD02279.complete
Subject Subject Range Query Range Percent Splice Strand
brk-RA 954..2883 1..1930 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:59 Download gff for SD02279.complete
Subject Subject Range Query Range Percent Splice Strand
brk-RA 956..2885 1..1930 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:29:15 Download gff for SD02279.complete
Subject Subject Range Query Range Percent Splice Strand
X 7308894..7310823 1..1930 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:29:15 Download gff for SD02279.complete
Subject Subject Range Query Range Percent Splice Strand
X 7308894..7310823 1..1930 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:29:15 Download gff for SD02279.complete
Subject Subject Range Query Range Percent Splice Strand
X 7308894..7310823 1..1930 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:12:03 Download gff for SD02279.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7202927..7204856 1..1930 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:54:07 Download gff for SD02279.complete
Subject Subject Range Query Range Percent Splice Strand
X 7316992..7318921 1..1930 100   Plus

SD02279.hyp Sequence

Translation from 2 to 1693

> SD02279.hyp
PLVHQLHHHHAAAVGHHHHHAAHHHAAHHHHAAAAAAAAAAAAAAAAAHH
HAAHHLLAANGMVPHPLAAHPHLHVPVAMHPQMQHQKEQQQQQQQLQQEQ
QQQDQQQSQQETPATIATNGSNQGSSNVLSAAKIAAVVAAAMATSNGNPT
PTATIPASSSSSSNTLPSSNNSSCHNSSSSSNSCNSNQVPIQVPILSGSP
GSTSSASHIPHVPFAYHHNLHGYLENRLEAVATPAPMDLSLGSSARRQMQ
LHEKDPSGVDLTFRKRKVITSPMQPDKISKLEEVIKKEPETETENEDVEV
DVETEQPEEHKLPSKQVKLFKPYLLDDDEEQDHHHHHHHHRQEDLDEGAA
EEEQDDEEESRYADDDEVDSKEAADKKQRRLKKKPSAINEQREPIIWSNH
PYPGGCVSPGSSITSSFQCPTSMQQQQTFPVAGGSPNQQFQDNCSSSKAT
TPLSPFSAPALSPTGFCCPKGSPVSGYESSSSTYSDSGSNYSLNLQLHAV
YNDNLMYMQQQQQQQQQQHHLQHQQHLQRWLDQESLATARTSSVNRPLIL
VADTAPTNLTLVA*

SD02279.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
brk-PA 704 CG9653-PA 142..704 1..563 2976 100 Plus
dsx-PF 427 CG11094-PF 119..336 7..210 195 31.6 Plus
dsx-PC 427 CG11094-PC 119..336 7..210 195 31.6 Plus
dsx-PB 427 CG11094-PB 119..336 7..210 195 31.6 Plus
dsx-PD 549 CG11094-PD 119..336 7..210 195 31.6 Plus

SD02279.pep Sequence

Translation from 185 to 1693

> SD02279.pep
MVPHPLAAHPHLHVPVAMHPQMQHQKEQQQQQQQLQQEQQQQDQQQSQQE
TPATIATNGSNQGSSNVLSAAKIAAVVAAAMATSNGNPTPTATIPASSSS
SSNTLPSSNNSSCHNSSSSSNSCNSNQVPIQVPILSGSPGSTSSASHIPH
VPFAYHHNLHGYLENRLEAVATPAPMDLSLGSSARRQMQLHEKDPSGVDL
TFRKRKVITSPMQPDKISKLEEVIKKEPETETENEDVEVDVETEQPEEHK
LPSKQVKLFKPYLLDDDEEQDHHHHHHHHRQEDLDEGAAEEEQDDEEESR
YADDDEVDSKEAADKKQRRLKKKPSAINEQREPIIWSNHPYPGGCVSPGS
SITSSFQCPTSMQQQQTFPVAGGSPNQQFQDNCSSSKATTPLSPFSAPAL
SPTGFCCPKGSPVSGYESSSSTYSDSGSNYSLNLQLHAVYNDNLMYMQQQ
QQQQQQQHHLQHQQHLQRWLDQESLATARTSSVNRPLILVADTAPTNLTL
VA*

SD02279.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\brk-PA 641 GF21139-PA 188..638 8..480 793 49.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19638-PA 709 GG19638-PA 204..709 1..502 1685 85.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24261-PA 769 GH24261-PA 264..727 108..473 312 39.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
brk-PA 704 CG9653-PA 203..704 1..502 2634 100 Plus
mim-PG 2009 CG33558-PG 1066..1597 21..494 180 22.8 Plus
mim-PC 2027 CG33558-PC 1084..1615 21..494 180 22.8 Plus
mim-PF 2028 CG33558-PF 1084..1615 21..494 180 22.8 Plus
Tet-PD 2056 CG43444-PD 1680..2024 1..374 178 25.1 Plus
Tet-PC 2056 CG43444-PC 1680..2024 1..374 178 25.1 Plus
Tet-PA 2860 CG43444-PA 2484..2828 1..374 178 25.1 Plus
Tet-PE 2866 CG43444-PE 2490..2834 1..374 178 25.1 Plus
Tet-PB 2915 CG43444-PB 2539..2883 1..374 178 25.1 Plus
Tet-PF 2921 CG43444-PF 2545..2889 1..374 178 25.1 Plus
mim-PB 1654 CG33558-PB 1084..1561 21..486 172 22.3 Plus
mim-PI 1934 CG33558-PI 1111..1588 21..486 172 22.3 Plus
mim-PN 1362 CG33558-PN 1111..1290 21..183 171 30.8 Plus
mim-PL 1802 CG33558-PL 949..1128 21..183 171 30.8 Plus
mim-PJ 1868 CG33558-PJ 1111..1290 21..183 171 30.8 Plus
btd-PA 644 CG12653-PA 45..203 9..146 170 33.3 Plus
CG16711-PC 1497 CG16711-PC 1389..1489 19..114 157 42.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15944-PA 800 GI15944-PA 426..782 151..486 389 41.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14695-PA 753 GL14695-PA 287..753 95..502 592 43.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\brk-PA 816 GA21942-PA 412..816 160..502 594 46.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17513-PA 692 GM17513-PA 201..692 1..502 2480 95 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16839-PA 691 GD16839-PA 201..691 1..502 2493 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14850-PA 724 GJ14850-PA 601..693 392..476 190 67.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16142-PA 809 GK16142-PA 441..762 163..473 379 43.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15708-PA 716 GE15708-PA 206..716 1..502 1567 83.3 Plus