BDGP Sequence Production Resources |
Search the DGRC for SD02279
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 22 |
Well: | 79 |
Vector: | pOT2 |
Associated Gene/Transcript | brk-RA |
Protein status: | SD02279.pep: validated not full length |
Preliminary Size: | 2178 |
Sequenced Size: | 1958 |
Gene | Date | Evidence |
---|---|---|
CG9653 | 2001-07-04 | Blastp of sequenced clone |
CG9653 | 2003-01-01 | Sim4 clustering to Release 3 |
brk | 2008-04-29 | Release 5.5 accounting |
brk | 2008-08-15 | Release 5.9 accounting |
brk | 2008-12-18 | 5.12 accounting |
1958 bp (1958 high quality bases) assembled on 2001-07-04
GenBank Submission: AY052069
> SD02279.complete ATCCGCTGGTGCACCAGTTGCATCACCATCACGCCGCCGCGGTGGGTCAT CATCATCATCATGCCGCCCACCATCATGCCGCCCATCATCATCACGCTGC AGCAGCAGCGGCGGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCCCACC ATCATGCCGCCCACCATTTGCTGGCAGCCAATGGCATGGTTCCACACCCC CTGGCCGCCCATCCCCACTTGCATGTCCCGGTGGCAATGCATCCTCAAAT GCAGCATCAGAAGGAGCAACAGCAGCAGCAGCAGCAGTTGCAGCAGGAGC AGCAGCAACAGGATCAGCAGCAGTCACAGCAGGAGACACCTGCAACCATT GCTACCAATGGCAGCAATCAGGGATCCTCGAATGTCCTTTCGGCGGCCAA AATAGCCGCTGTTGTTGCCGCCGCCATGGCCACCAGCAATGGCAATCCCA CACCGACAGCAACAATCCCCGCCAGCAGCAGCAGCAGCAGCAACACATTG CCGAGCAGCAATAACAGTAGTTGCCACAACAGCAGCAGCAGCAGCAATAG CTGCAACAGCAACCAAGTGCCAATACAAGTGCCAATCCTGAGCGGATCCC CTGGGTCCACATCGTCAGCCAGTCACATTCCACATGTGCCCTTTGCCTAC CATCACAATCTGCATGGCTATTTGGAGAATCGACTGGAGGCGGTTGCCAC ACCAGCCCCCATGGACCTCTCTCTCGGATCCTCTGCCCGCCGTCAAATGC AGTTGCACGAAAAGGATCCATCTGGTGTGGATCTCACTTTCCGCAAACGT AAGGTCATCACTAGTCCGATGCAGCCGGATAAGATTAGTAAGCTGGAGGA GGTGATCAAGAAGGAGCCCGAAACGGAAACGGAGAACGAGGATGTGGAGG TGGACGTGGAGACGGAGCAGCCGGAGGAGCACAAGCTGCCCTCTAAACAG GTCAAGCTATTTAAGCCCTATTTGCTGGACGATGATGAGGAGCAGGATCA TCATCATCATCACCATCACCATCGGCAGGAGGATTTGGATGAGGGAGCTG CCGAGGAGGAGCAGGACGACGAGGAAGAGTCCCGCTATGCCGACGATGAT GAGGTGGACTCCAAGGAGGCGGCCGACAAGAAACAGCGTCGCCTCAAGAA AAAGCCATCGGCAATCAACGAACAAAGGGAACCCATCATCTGGAGCAACC ATCCGTATCCCGGTGGCTGTGTATCGCCCGGCAGTTCGATCACCAGCAGC TTTCAGTGCCCCACCAGTATGCAACAGCAGCAGACATTTCCCGTCGCCGG CGGGAGTCCTAATCAGCAATTTCAGGACAACTGCAGCTCCAGCAAAGCCA CCACGCCCCTCAGCCCATTCTCGGCGCCCGCCCTCTCGCCCACCGGCTTC TGTTGCCCCAAAGGATCGCCCGTTTCCGGTTACGAGAGCAGCTCATCCAC CTACAGCGACAGCGGCAGCAACTACAGCCTCAATCTCCAGCTGCATGCCG TCTACAACGACAATCTGATGTACATGCAACAGCAGCAGCAGCAGCAGCAA CAGCAGCATCACCTGCAACATCAGCAGCACCTGCAGCGCTGGCTGGATCA GGAGTCCTTGGCCACTGCGAGGACATCATCCGTCAACCGACCACTGATTC TCGTGGCGGATACTGCGCCCACAAACCTGACCCTGGTGGCCTAAGAACAC ACACACACACACACACACACACACACACAACAAACAACACACACAATAGA AACTAAGGAAGCAGCAATCCCACCAATCGGATGTTATAATGGCAGTCACT GGGCCTGGCCTTTTAGTTCCCTAAGCCATATTTAAGCTTAATAACGTTTT TTTTAGCCCTACCACCTAAGTTTACCTTAATAAAAAATTGTATATCTAAG CGCAAACATATATCTTCCAAGCATATCAGCAAAAAAAAAAAAAAAAAAAA AAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
brk-RA | 3672 | brk-RA | 954..2891 | 1..1938 | 9690 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 7200825..7202754 | 1..1930 | 9650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 7308894..7310831 | 1..1938 | 9690 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 7316992..7318929 | 1..1938 | 9690 | 100 | Plus |
3R | 31820162 | 3R | 23133511..23133572 | 1587..1526 | 205 | 88.7 | Minus |
X | 23527363 | X | 3914493..3914542 | 1579..1530 | 190 | 92 | Minus |
X | 23527363 | X | 10805073..10805134 | 1587..1526 | 190 | 87 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2480..2654 | 1438..1604 | 152 | 59.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 7201160..7201295 | 336..471 | 100 | == | Plus |
chrX | 7201388..7202350 | 564..1526 | 97 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
brk-RA | 422..2115 | 1..1694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
brk-RA | 422..2115 | 1..1694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
brk-RA | 422..2115 | 1..1694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
brk-RA | 422..2115 | 1..1694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
brk-RA | 422..2115 | 1..1694 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
brk-RA | 954..2883 | 1..1930 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
brk-RA | 954..2883 | 1..1930 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
brk-RA | 956..2885 | 1..1930 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
brk-RA | 954..2883 | 1..1930 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
brk-RA | 956..2885 | 1..1930 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 7308894..7310823 | 1..1930 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 7308894..7310823 | 1..1930 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 7308894..7310823 | 1..1930 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 7202927..7204856 | 1..1930 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 7316992..7318921 | 1..1930 | 100 | Plus |
Translation from 2 to 1693
> SD02279.hyp PLVHQLHHHHAAAVGHHHHHAAHHHAAHHHHAAAAAAAAAAAAAAAAAHH HAAHHLLAANGMVPHPLAAHPHLHVPVAMHPQMQHQKEQQQQQQQLQQEQ QQQDQQQSQQETPATIATNGSNQGSSNVLSAAKIAAVVAAAMATSNGNPT PTATIPASSSSSSNTLPSSNNSSCHNSSSSSNSCNSNQVPIQVPILSGSP GSTSSASHIPHVPFAYHHNLHGYLENRLEAVATPAPMDLSLGSSARRQMQ LHEKDPSGVDLTFRKRKVITSPMQPDKISKLEEVIKKEPETETENEDVEV DVETEQPEEHKLPSKQVKLFKPYLLDDDEEQDHHHHHHHHRQEDLDEGAA EEEQDDEEESRYADDDEVDSKEAADKKQRRLKKKPSAINEQREPIIWSNH PYPGGCVSPGSSITSSFQCPTSMQQQQTFPVAGGSPNQQFQDNCSSSKAT TPLSPFSAPALSPTGFCCPKGSPVSGYESSSSTYSDSGSNYSLNLQLHAV YNDNLMYMQQQQQQQQQQHHLQHQQHLQRWLDQESLATARTSSVNRPLIL VADTAPTNLTLVA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
brk-PA | 704 | CG9653-PA | 142..704 | 1..563 | 2976 | 100 | Plus |
dsx-PF | 427 | CG11094-PF | 119..336 | 7..210 | 195 | 31.6 | Plus |
dsx-PC | 427 | CG11094-PC | 119..336 | 7..210 | 195 | 31.6 | Plus |
dsx-PB | 427 | CG11094-PB | 119..336 | 7..210 | 195 | 31.6 | Plus |
dsx-PD | 549 | CG11094-PD | 119..336 | 7..210 | 195 | 31.6 | Plus |
Translation from 185 to 1693
> SD02279.pep MVPHPLAAHPHLHVPVAMHPQMQHQKEQQQQQQQLQQEQQQQDQQQSQQE TPATIATNGSNQGSSNVLSAAKIAAVVAAAMATSNGNPTPTATIPASSSS SSNTLPSSNNSSCHNSSSSSNSCNSNQVPIQVPILSGSPGSTSSASHIPH VPFAYHHNLHGYLENRLEAVATPAPMDLSLGSSARRQMQLHEKDPSGVDL TFRKRKVITSPMQPDKISKLEEVIKKEPETETENEDVEVDVETEQPEEHK LPSKQVKLFKPYLLDDDEEQDHHHHHHHHRQEDLDEGAAEEEQDDEEESR YADDDEVDSKEAADKKQRRLKKKPSAINEQREPIIWSNHPYPGGCVSPGS SITSSFQCPTSMQQQQTFPVAGGSPNQQFQDNCSSSKATTPLSPFSAPAL SPTGFCCPKGSPVSGYESSSSTYSDSGSNYSLNLQLHAVYNDNLMYMQQQ QQQQQQQHHLQHQQHLQRWLDQESLATARTSSVNRPLILVADTAPTNLTL VA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\brk-PA | 641 | GF21139-PA | 188..638 | 8..480 | 793 | 49.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19638-PA | 709 | GG19638-PA | 204..709 | 1..502 | 1685 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24261-PA | 769 | GH24261-PA | 264..727 | 108..473 | 312 | 39.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
brk-PA | 704 | CG9653-PA | 203..704 | 1..502 | 2634 | 100 | Plus |
mim-PG | 2009 | CG33558-PG | 1066..1597 | 21..494 | 180 | 22.8 | Plus |
mim-PC | 2027 | CG33558-PC | 1084..1615 | 21..494 | 180 | 22.8 | Plus |
mim-PF | 2028 | CG33558-PF | 1084..1615 | 21..494 | 180 | 22.8 | Plus |
Tet-PD | 2056 | CG43444-PD | 1680..2024 | 1..374 | 178 | 25.1 | Plus |
Tet-PC | 2056 | CG43444-PC | 1680..2024 | 1..374 | 178 | 25.1 | Plus |
Tet-PA | 2860 | CG43444-PA | 2484..2828 | 1..374 | 178 | 25.1 | Plus |
Tet-PE | 2866 | CG43444-PE | 2490..2834 | 1..374 | 178 | 25.1 | Plus |
Tet-PB | 2915 | CG43444-PB | 2539..2883 | 1..374 | 178 | 25.1 | Plus |
Tet-PF | 2921 | CG43444-PF | 2545..2889 | 1..374 | 178 | 25.1 | Plus |
mim-PB | 1654 | CG33558-PB | 1084..1561 | 21..486 | 172 | 22.3 | Plus |
mim-PI | 1934 | CG33558-PI | 1111..1588 | 21..486 | 172 | 22.3 | Plus |
mim-PN | 1362 | CG33558-PN | 1111..1290 | 21..183 | 171 | 30.8 | Plus |
mim-PL | 1802 | CG33558-PL | 949..1128 | 21..183 | 171 | 30.8 | Plus |
mim-PJ | 1868 | CG33558-PJ | 1111..1290 | 21..183 | 171 | 30.8 | Plus |
btd-PA | 644 | CG12653-PA | 45..203 | 9..146 | 170 | 33.3 | Plus |
CG16711-PC | 1497 | CG16711-PC | 1389..1489 | 19..114 | 157 | 42.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15944-PA | 800 | GI15944-PA | 426..782 | 151..486 | 389 | 41.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14695-PA | 753 | GL14695-PA | 287..753 | 95..502 | 592 | 43.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\brk-PA | 816 | GA21942-PA | 412..816 | 160..502 | 594 | 46.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17513-PA | 692 | GM17513-PA | 201..692 | 1..502 | 2480 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16839-PA | 691 | GD16839-PA | 201..691 | 1..502 | 2493 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14850-PA | 724 | GJ14850-PA | 601..693 | 392..476 | 190 | 67.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16142-PA | 809 | GK16142-PA | 441..762 | 163..473 | 379 | 43.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15708-PA | 716 | GE15708-PA | 206..716 | 1..502 | 1567 | 83.3 | Plus |