Clone SD02315 Report

Search the DGRC for SD02315

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:23
Well:15
Vector:pOT2
Associated Gene/Transcriptprod-RA
Protein status:SD02315.pep: gold
Preliminary Size:1649
Sequenced Size:1626

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18608 2001-09-19 Blastp of sequenced clone
CG18608 2003-01-01 Sim4 clustering to Release 3
prod 2008-04-29 Release 5.5 accounting
prod 2008-08-15 Release 5.9 accounting
prod 2008-12-18 5.12 accounting

Clone Sequence Records

SD02315.complete Sequence

1626 bp (1626 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058757

> SD02315.complete
AAAATCCCAAACGCTAAATGCGTAAATTGTTTGTGAACATCTCGCATCGC
TTGGTGGCGTCGATTTGCATTTTAGGGCTTTTGCCAGCTATTTAAACACG
GCATCGAGCACGCAGGCACAGAGCAAGGATACCCGGATGAACGGCAAGAT
GGACCGCCGCAAGAAACGCACCTCATCGGAGCAGTACCAAATGTACATCG
ACATGATGGAGAGCGACCCCATTTTCGCCACCGGACGAGTGCCGCGCGAC
TATGACCTGAACTACTTGACCAAAAAGTGGAAGGAGCTCTCCGACCGGCT
AAACAAGTGCAGCTCCGGACCCACACTGACGCCGGAGGAGTGGCGCAAGC
GCCTAAACGATTGGAAGAACACCACTCGCTGCAAGTACAGACGCAGCCTT
CTGTCCACGGAAAAGGACATCTCGATGACCTCCGTGGAGACGCGCGCTCT
CGATCTCTTTGGCAAGGTGCCCACCACCGGCGGCGAAACGATGCTCAATC
TGAAGTCCGAAAAGGATGAGCACGACGACGAGATGGAGGAACTGGGCCAG
CGTACTTCGGTGGCATTTCAAAAGGAACTTCAGGCAGCCGTTGAAGAGGC
AATCAACGATGAGGTGGACGAGGAGGAGATGGTGGAGGAGCATGTCGATC
ACGAGGACATGATGGAGGAGAATCTGGCGGAGACCGGCATCACCGCGTCC
ACAACGGCGGTCAATACGGGTGGCGGCACCTATCGCACCATCGTCGTGGA
CAACACATCCTTCGAGCATGTCGAGGAGGATCCCCAAACGGTGCAGCCGC
ACGCCGTCGAGTACGTCACATCCCGCAGGCCTGCTGCCCCCGTCATCAAT
CCGGGCACAGCCTCCTCCGGCAATAAGCTGATCAACGGCGAGCTGCCCGT
CAAGCGGATGCGCACACAGCCCAGGGAGCAAATTATCTACGAAGTTAAAA
ATGCGCCGCGTTGCATTTCAAACATGCAGGCCGTGCCGCCGCTGCACAGT
ACAAAGCTGGAGCGGGAACCCAGTTCGCTGACAAGCGCGCTGAGCAGCAG
CGATGCCCAGCAGATCGCGCACCAGCTGAAGCGACTGGCCGACATCAAAT
TCGAGACACTGCAATTTGAGATTGCGCGCTTCAAGTTCAACAACCCGGGC
TTCCAGTACGATCCGCCGTCCTTATAGTGTCCCAAGCGGCAGGGCGAGAT
CAGTGGGTCTAAGCAGTCGGCAAAAACTCCAGCACCAGCAGAAGCCACGG
CGAAAGGATCAGCATTAGCAAAAGCAATGGAACGAGTCAAGTCAGCTCGA
ATTGTATAGGTCTTTTACGAATGTGCTCTTTGGCACTCGAACGTTTTCTA
GCTCTCCAATTCCTGCGCTCCGCCGGAACACACACAAAACTGTAACTTAT
AGTAGCCAGATTTAAATTGACTAGTTTAAAATTGACATAGAATTCTATTG
TGTAAACAGTTATTTTCAACTTTTCAAGCACTTCATCTACGATATCCATA
TATATGAAATAGGCATAAAATTGTAATATCTAAAGTGAATAACAATTGGA
CAAGTAATTTTAACGCGTTGTATGTAAATGTTAAGAATAAAGTTTACCAA
TGATAAATAAAAAAAAAAAAAAAAAA

SD02315.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
prod-RA 1614 prod-RA 8..1614 1..1607 8005 99.8 Plus
CG15107-RA 1181 CG15107-RA 235..361 271..397 290 81.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14856513..14857178 1608..943 3300 99.7 Minus
chr2R 21145070 chr2R 14857239..14857839 948..348 2990 99.8 Minus
chr2R 21145070 chr2R 14857905..14858253 349..1 1745 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:45:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18969403..18970069 1609..943 3305 99.7 Minus
2R 25286936 2R 18970130..18970730 948..348 2990 99.8 Minus
2R 25286936 2R 18970796..18971144 349..1 1745 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18970602..18971268 1609..943 3305 99.7 Minus
2R 25260384 2R 18971329..18971929 948..348 2990 99.8 Minus
2R 25260384 2R 18971995..18972343 349..1 1745 100 Minus
2R 25260384 2R 18973444..18973522 349..271 155 79.7 Minus
Blast to na_te.dros performed on 2019-03-16 20:08:50 has no hits.

SD02315.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:09:34 Download gff for SD02315.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14856513..14857176 945..1608 99 <- Minus
chr2R 14857243..14857837 350..944 100 <- Minus
chr2R 14857905..14858253 1..349 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:58:09 Download gff for SD02315.complete
Subject Subject Range Query Range Percent Splice Strand
prod-RA 1..1041 137..1177 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:40:05 Download gff for SD02315.complete
Subject Subject Range Query Range Percent Splice Strand
prod-RA 1..1041 137..1177 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:27:24 Download gff for SD02315.complete
Subject Subject Range Query Range Percent Splice Strand
prod-RA 1..1041 137..1177 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:53:50 Download gff for SD02315.complete
Subject Subject Range Query Range Percent Splice Strand
prod-RA 1..1041 137..1177 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:44:49 Download gff for SD02315.complete
Subject Subject Range Query Range Percent Splice Strand
prod-RA 8..1614 1..1607 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:58:09 Download gff for SD02315.complete
Subject Subject Range Query Range Percent Splice Strand
prod-RA 8..1614 1..1607 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:05 Download gff for SD02315.complete
Subject Subject Range Query Range Percent Splice Strand
prod-RA 1..1597 12..1608 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:27:24 Download gff for SD02315.complete
Subject Subject Range Query Range Percent Splice Strand
prod-RA 8..1614 1..1607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:50 Download gff for SD02315.complete
Subject Subject Range Query Range Percent Splice Strand
prod-RA 1..1597 12..1608 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:34 Download gff for SD02315.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18969404..18970067 945..1608 99 <- Minus
2R 18970134..18970728 350..944 100 <- Minus
2R 18970796..18971144 1..349 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:34 Download gff for SD02315.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18969404..18970067 945..1608 99 <- Minus
2R 18970134..18970728 350..944 100 <- Minus
2R 18970796..18971144 1..349 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:34 Download gff for SD02315.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18969404..18970067 945..1608 99 <- Minus
2R 18970134..18970728 350..944 100 <- Minus
2R 18970796..18971144 1..349 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:05 Download gff for SD02315.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14856909..14857572 945..1608 99 <- Minus
arm_2R 14857639..14858233 350..944 100 <- Minus
arm_2R 14858301..14858649 1..349 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:04:43 Download gff for SD02315.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18970603..18971266 945..1608 99 <- Minus
2R 18971333..18971927 350..944 100 <- Minus
2R 18971995..18972343 1..349 100   Minus

SD02315.pep Sequence

Translation from 136 to 1176

> SD02315.pep
MNGKMDRRKKRTSSEQYQMYIDMMESDPIFATGRVPRDYDLNYLTKKWKE
LSDRLNKCSSGPTLTPEEWRKRLNDWKNTTRCKYRRSLLSTEKDISMTSV
ETRALDLFGKVPTTGGETMLNLKSEKDEHDDEMEELGQRTSVAFQKELQA
AVEEAINDEVDEEEMVEEHVDHEDMMEENLAETGITASTTAVNTGGGTYR
TIVVDNTSFEHVEEDPQTVQPHAVEYVTSRRPAAPVINPGTASSGNKLIN
GELPVKRMRTQPREQIIYEVKNAPRCISNMQAVPPLHSTKLEREPSSLTS
ALSSSDAQQIAHQLKRLADIKFETLQFEIARFKFNNPGFQYDPPSL*

SD02315.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13736-PA 352 GF13736-PA 1..352 1..346 1468 82.2 Plus
Dana\GF13735-PA 232 GF13735-PA 1..101 5..108 300 54.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20931-PA 346 GG20931-PA 1..346 1..346 1722 96 Plus
Dere\GG20930-PA 230 GG20930-PA 1..100 5..108 319 57.7 Plus
Dere\GG20930-PA 230 GG20930-PA 152..230 248..345 154 40.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19726-PA 339 GH19726-PA 1..339 5..346 1226 68.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
prod-PA 346 CG18608-PA 1..346 1..346 1795 100 Plus
CG15107-PA 239 CG15107-PA 1..237 5..343 414 33.6 Plus
CG15107-PB 243 CG15107-PB 1..241 5..343 414 33 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20147-PA 342 GI20147-PA 1..342 5..346 1174 67.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10575-PA 182 GL10575-PA 1..142 5..146 699 88 Plus
Dper\GL10574-PA 152 GL10574-PA 1..94 5..129 226 40.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15012-PA 349 GA15012-PA 1..349 5..346 1414 76.4 Plus
Dpse\GA24412-PA 240 GA24412-PA 1..240 5..346 495 36.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19858-PA 342 GM19858-PA 1..342 1..346 1803 97.1 Plus
Dsec\GM19857-PA 240 GM19857-PA 1..104 5..112 330 56.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\prod-PA 346 GD25345-PA 1..346 1..346 1834 98 Plus
Dsim\GD25344-PA 240 GD25344-PA 1..104 5..112 329 56.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22426-PA 343 GJ22426-PA 1..343 5..346 1184 68.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13867-PA 346 GE13867-PA 1..346 1..346 1838 98 Plus
Dyak\GE13866-PA 240 GE13866-PA 1..100 5..108 325 56.7 Plus
Dyak\GE13866-PA 240 GE13866-PA 162..238 248..343 155 38.5 Plus

SD02315.hyp Sequence

Translation from 136 to 1176

> SD02315.hyp
MNGKMDRRKKRTSSEQYQMYIDMMESDPIFATGRVPRDYDLNYLTKKWKE
LSDRLNKCSSGPTLTPEEWRKRLNDWKNTTRCKYRRSLLSTEKDISMTSV
ETRALDLFGKVPTTGGETMLNLKSEKDEHDDEMEELGQRTSVAFQKELQA
AVEEAINDEVDEEEMVEEHVDHEDMMEENLAETGITASTTAVNTGGGTYR
TIVVDNTSFEHVEEDPQTVQPHAVEYVTSRRPAAPVINPGTASSGNKLIN
GELPVKRMRTQPREQIIYEVKNAPRCISNMQAVPPLHSTKLEREPSSLTS
ALSSSDAQQIAHQLKRLADIKFETLQFEIARFKFNNPGFQYDPPSL*

SD02315.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
prod-PA 346 CG18608-PA 1..346 1..346 1795 100 Plus
CG15107-PA 239 CG15107-PA 1..237 5..343 414 33.6 Plus
CG15107-PB 243 CG15107-PB 1..241 5..343 414 33 Plus