Clone SD02418 Report

Search the DGRC for SD02418

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:24
Well:18
Vector:pOT2
Associated Gene/TranscriptBHD-RA
Protein status:SD02418.pep: gold
Preliminary Size:1585
Sequenced Size:1535

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8616 2001-01-01 Release 2 assignment
CG8616 2002-06-06 Blastp of sequenced clone
CG8616 2003-01-01 Sim4 clustering to Release 3
CG8616 2008-04-29 Release 5.5 accounting
CG8616 2008-08-15 Release 5.9 accounting
CG8616 2008-12-18 5.12 accounting

Clone Sequence Records

SD02418.complete Sequence

1535 bp (1535 high quality bases) assembled on 2002-06-06

GenBank Submission: AY119656

> SD02418.complete
ATAACATAACCAAGGATATAAAGGAAACTGTAGAGCAGCGATGAACGCCG
TGATAGCGCTGTGCCACTTTTGCGAGGCGCACGGTCCCTGCGCCATCTTC
TGCACCCAGACACTGAGGGACACCAAGCTGGAGGACCTGTCACTGGAACA
GCAGACGCAAAAGACCTGCTCCGCCTGCAATTACTCCATGGGCAAGAATA
ACAATGCGATCTACAGCAGGGACACGGAAAGCGGGGCCACATTCGTCAGC
ACCAAGGTGGCGGTGCTGCCGGAGGTGGCCAGTCTGGTCAAGCAGGCGGC
TGTGCTCAGTCTGAGCAATGGTACGGATGCCAGCAAGGATGGCGAGTTCG
TGTTCTTTGGCGATTCGTCCAGGGGTCACATCCTGAGTCACACCTTCCGA
GTGAGCGACCTGCAGGCCCGCGGCTACTCGCAGCTGTTCTCCATCATTGT
GCTGATGAAGGACAAGTATTTCCTGCTTAACATCAAGCCCTTTCTGGCGG
AGCACCTGAAGAAGGTGTCGTCGGAGCTGCAGGCAGCTGCCAAAAAGACC
AAGGAGACGGAGGAGCAGACGTACTCAGAGCGACAGAGGCGTCTGTCCGG
CGCTCAGTTCCTGATGCCCACTTCCCGTGCCTTGCTGGAGCTAACAGGCG
AGGAGCACATCTTCGCCCAGTTGCACTCACACTTCTCGTGGCTCCTGCTA
GCCGGATCCCGCTTCCTCACCGAGCACGTGACCTTCGGCAACCTACCGTG
GCTACCGCCACAAAGTAGTGGCCGTCCTCCCGCACAGCGACTCACCTACA
ACAGTTCCACACTGCCAATGATAGAGAGCATCGACGATCCCGATCTGGAG
GAGTTCTTCTCGTTGCGCCATCTCAAGAGTGTCGTCCGCAAGGAGGAGTT
TGCCACGGTCTGCTATTGTGCCTTGACTGGGGTGAAGATTGTGGTCAGAG
GTGATCCCAGAAAGACCTTCCGTTTCATGGTCTGCCTGAAGAAACTCCTG
CCCGAGCCCATGCACAATCTAATGCGAATCGATGCCCAACATCAACACTC
CATCAGCTCCGAGTACAAAATCATATCCGTGTCCAATGACATAGCCGTGC
CAATGGCCAGTAGCTCCGTTTATCGGATCGATTTTCTGGACAAACACGTC
AACGGACACGAGGTGTCGGTCAAATGGCCAGGAGAGCTGCCACGAAAATT
GCCAGATCTTATGGTGAAACTTTTAAAGGCGGTGGAGGAGAAAAACTTCA
CAGAACTCGTGCTGAACAAGCAGACCAAGGTGCTCATCGAAGAGTGGAAA
AACAAAGTGACCTGCCTCAACCATGCCAAATCCACCAGCGTGCAGGGCAA
ACTTAAGAAGGTGCTTGGCGTGCAGCCGCACGATCAGCCGATCATTAACT
ACTGGAGCACACACCTTCACTAGTACAACCGATTACCGCACAGATTAAGG
ACTTTCGTTTTCACCTTTTGGAATAAAACTCTTTTATTTCCGTGCGATGG
CGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD02418.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
BHD-RA 1565 BHD-RA 54..1562 1..1509 7485 99.7 Plus
BHD.a 2486 BHD.a 975..2483 1..1509 7485 99.7 Plus
RpL18.a 765 RpL18.a 709..765 1509..1453 255 96.4 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7230755..7231953 1..1199 5980 99.9 Plus
chr3L 24539361 chr3L 7232204..7232405 1303..1504 965 98.5 Plus
chr3L 24539361 chr3L 7232043..7232145 1200..1302 515 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:45:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7238595..7239793 1..1199 5980 99.9 Plus
3L 28110227 3L 7240044..7240250 1303..1509 990 98.6 Plus
3L 28110227 3L 7239883..7239985 1200..1302 515 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7231695..7232893 1..1199 5980 99.9 Plus
3L 28103327 3L 7233144..7233350 1303..1509 990 98.5 Plus
3L 28103327 3L 7232983..7233085 1200..1302 515 100 Plus
Blast to na_te.dros performed on 2019-03-16 09:06:11 has no hits.

SD02418.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:07:11 Download gff for SD02418.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7230755..7231953 1..1199 99 -> Plus
chr3L 7232043..7232145 1200..1302 100 -> Plus
chr3L 7232204..7232405 1303..1504 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:57:42 Download gff for SD02418.complete
Subject Subject Range Query Range Percent Splice Strand
CG8616-RA 1..1383 41..1423 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:30:03 Download gff for SD02418.complete
Subject Subject Range Query Range Percent Splice Strand
BHD-RA 1..1383 41..1423 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:05:15 Download gff for SD02418.complete
Subject Subject Range Query Range Percent Splice Strand
BHD-RA 1..1383 41..1423 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:20:20 Download gff for SD02418.complete
Subject Subject Range Query Range Percent Splice Strand
CG8616-RA 1..1383 41..1423 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:59:51 Download gff for SD02418.complete
Subject Subject Range Query Range Percent Splice Strand
BHD-RA 1..1383 41..1423 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:59:39 Download gff for SD02418.complete
Subject Subject Range Query Range Percent Splice Strand
CG8616-RA 54..1557 1..1504 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:30:03 Download gff for SD02418.complete
Subject Subject Range Query Range Percent Splice Strand
BHD-RA 54..1557 1..1504 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:15 Download gff for SD02418.complete
Subject Subject Range Query Range Percent Splice Strand
BHD-RA 54..1557 1..1504 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:20:20 Download gff for SD02418.complete
Subject Subject Range Query Range Percent Splice Strand
CG8616-RA 54..1557 1..1504 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:59:51 Download gff for SD02418.complete
Subject Subject Range Query Range Percent Splice Strand
BHD-RA 54..1557 1..1504 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:11 Download gff for SD02418.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7238595..7239793 1..1199 99 -> Plus
3L 7239883..7239985 1200..1302 100 -> Plus
3L 7240044..7240245 1303..1504 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:11 Download gff for SD02418.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7238595..7239793 1..1199 99 -> Plus
3L 7239883..7239985 1200..1302 100 -> Plus
3L 7240044..7240245 1303..1504 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:11 Download gff for SD02418.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7238595..7239793 1..1199 99 -> Plus
3L 7239883..7239985 1200..1302 100 -> Plus
3L 7240044..7240245 1303..1504 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:15 Download gff for SD02418.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7231695..7232893 1..1199 99 -> Plus
arm_3L 7232983..7233085 1200..1302 100 -> Plus
arm_3L 7233144..7233345 1303..1504 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:53:59 Download gff for SD02418.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7231695..7232893 1..1199 99 -> Plus
3L 7232983..7233085 1200..1302 100 -> Plus
3L 7233144..7233345 1303..1504 98   Plus

SD02418.pep Sequence

Translation from 40 to 1422

> SD02418.pep
MNAVIALCHFCEAHGPCAIFCTQTLRDTKLEDLSLEQQTQKTCSACNYSM
GKNNNAIYSRDTESGATFVSTKVAVLPEVASLVKQAAVLSLSNGTDASKD
GEFVFFGDSSRGHILSHTFRVSDLQARGYSQLFSIIVLMKDKYFLLNIKP
FLAEHLKKVSSELQAAAKKTKETEEQTYSERQRRLSGAQFLMPTSRALLE
LTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRPPAQR
LTYNSSTLPMIESIDDPDLEEFFSLRHLKSVVRKEEFATVCYCALTGVKI
VVRGDPRKTFRFMVCLKKLLPEPMHNLMRIDAQHQHSISSEYKIISVSND
IAVPMASSSVYRIDFLDKHVNGHEVSVKWPGELPRKLPDLMVKLLKAVEE
KNFTELVLNKQTKVLIEEWKNKVTCLNHAKSTSVQGKLKKVLGVQPHDQP
IINYWSTHLH*

SD02418.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25016-PA 461 GF25016-PA 1..461 1..460 2317 92.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14411-PA 460 GG14411-PA 1..460 1..460 2429 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16298-PA 476 GH16298-PA 1..476 1..460 2091 83.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
BHD-PA 460 CG8616-PA 1..460 1..460 2385 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13239-PA 478 GI13239-PA 1..478 1..460 2047 81.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25234-PA 468 GL25234-PA 1..468 1..460 2157 88.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21211-PB 482 GA21211-PB 1..474 1..444 1919 81.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14826-PA 460 GM14826-PA 1..460 1..460 2458 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14000-PA 460 GD14000-PA 1..460 1..460 2461 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12012-PA 475 GJ12012-PA 1..475 1..460 2109 84.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25541-PA 490 GK25541-PA 1..490 1..460 2002 79.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21600-PA 460 GE21600-PA 1..460 1..460 2435 98.3 Plus

SD02418.hyp Sequence

Translation from 40 to 1422

> SD02418.hyp
MNAVIALCHFCEAHGPCAIFCTQTLRDTKLEDLSLEQQTQKTCSACNYSM
GKNNNAIYSRDTESGATFVSTKVAVLPEVASLVKQAAVLSLSNGTDASKD
GEFVFFGDSSRGHILSHTFRVSDLQARGYSQLFSIIVLMKDKYFLLNIKP
FLAEHLKKVSSELQAAAKKTKETEEQTYSERQRRLSGAQFLMPTSRALLE
LTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRPPAQR
LTYNSSTLPMIESIDDPDLEEFFSLRHLKSVVRKEEFATVCYCALTGVKI
VVRGDPRKTFRFMVCLKKLLPEPMHNLMRIDAQHQHSISSEYKIISVSND
IAVPMASSSVYRIDFLDKHVNGHEVSVKWPGELPRKLPDLMVKLLKAVEE
KNFTELVLNKQTKVLIEEWKNKVTCLNHAKSTSVQGKLKKVLGVQPHDQP
IINYWSTHLH*

SD02418.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
BHD-PA 460 CG8616-PA 1..460 1..460 2385 100 Plus